Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005173

Physical Location & Seq

Genomic Coordinates Reverse (-)

29895775 .. 29896804

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1216300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGGACCTGGTGGACCTCCACCTCCTCCAGGACCTCCCGGACCTCCCGGACCGCCAGGTTTCGGCGGCCCTCCTGGTCCGCCTCCTCTCTGCTGTGGCCTTTGTGATTGTATTGGTTCATGTTTGAGTTTTCTGTGCTGCTGCTGGTTATTGCAAGACTGCTTTGGTGGGCCACCAGGGCCTCCTGGACCGCCGCCACCTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

69

Amino Acids

6.47

Weight (kDa)

4.05

Isoelectric Point (pI)

84.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005173)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24810 FvH4_2g24820 FvH4_6g04120
malus_domestica	MD03G1276800.v1.1 MD04G1216200.v1.1 MD04G1216300.v1.1 MD11G1298900.v1.1
prunus_persica	Prupe.8G253200_v2.0.a1 Prupe.8G253200_v2.0.a1
pyrus_communis	pycom04g19210 pycom04g19220 pycom11g26250
rosa_chinensis	RchiOBHm_Chr3g0452671 RchiOBHm_Chr6g0292641
rosa_laevigata	RLG00000012002 RLG00000012003
rosa_roxburghii	Rroxscaffold_6G00429710 Rroxscaffold_7G00174830
rosa_rugosa	Rorug02G0642600 Rorug02G0642700 Rorug06G0228700
rosa_samantha	Rh3AG044800 Rh3BG047100 Rh3CG045600 Rh3DG046000 Rh6AG342000 Rh6BG349300 Rh6CG356200
rosa_wichuraiana	Rw3G003500 Rw6G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	53, 66, 80, 191, 194
AfiI	CCNNNNNNNGG	2 cut(s)	29, 62
AjnI	CCWGG	6 cut(s)	7, 28, 55, 73, 175, 184
AoxI	GGCC	4 cut(s)	67, 97, 170, 179
ApeKI	GCWGC	2 cut(s)	138, 141
AsuC2I	CCSGG	2 cut(s)	39, 48
AvaII	GGWCC	7 cut(s)	5, 14, 32, 41, 50, 77, 188
BbvI	GCAGC	2 cut(s)	125, 128
BciT130I	CCWGG	6 cut(s)	9, 30, 57, 75, 177, 186
BcnI	CCSGG	2 cut(s)	39, 48
BglI	GCCNNNNNGGC	1 cut(s)	178
BisI	GCNGC	4 cut(s)	67, 139, 142, 194
BlsI	GCNGC	4 cut(s)	68, 140, 143, 195
Bme1390I	CCNGG	8 cut(s)	9, 30, 39, 48, 57, 75, 177, 186
Bme18I	GGWCC	7 cut(s)	5, 14, 32, 41, 50, 77, 188
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	8 cut(s)	9, 30, 39, 48, 57, 75, 177, 186
BpmI	CTGGAG	1 cut(s)	12
BpuMI	CCSGG	2 cut(s)	39, 48
BsaJI	CCNNGG	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 62
BseBI	CCWGG	6 cut(s)	9, 30, 57, 75, 177, 186
BseDI	CCNNGG	1 cut(s)	176
BseLI	CCNNNNNNNGG	2 cut(s)	29, 62
BseRI	GAGGAG	2 cut(s)	15, 75
BseXI	GCAGC	2 cut(s)	125, 128
BshFI	GGCC	4 cut(s)	69, 99, 172, 181
BsiSI	CCGG	2 cut(s)	39, 48
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	2 cut(s)	29, 62
BsmFI	GGGAC	1 cut(s)	18
BsnI	GGCC	4 cut(s)	69, 99, 172, 181
BspACI	CCGC	5 cut(s)	53, 66, 80, 191, 194
BspANI	GGCC	4 cut(s)	69, 99, 172, 181
BspLI	GGNNCC	1 cut(s)	6
BssECI	CCNNGG	1 cut(s)	176
Bst2UI	CCWGG	6 cut(s)	9, 30, 57, 75, 177, 186
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	6 cut(s)	9, 30, 57, 75, 177, 186
BstSCI	CCNGG	8 cut(s)	7, 28, 37, 46, 55, 73, 175, 184
BstV1I	GCAGC	2 cut(s)	125, 128
BsuRI	GGCC	4 cut(s)	69, 99, 172, 181
CpoI	CGGWCCG	1 cut(s)	50
CsiI	ACCWGGT	1 cut(s)	7
CspI	CGGWCCG	1 cut(s)	50
CviAII	CATG	2 cut(s)	120, 204
CviJI	RGCY	4 cut(s)	69, 99, 172, 181
CviKI_1	RGCY	4 cut(s)	69, 99, 172, 181
EciI	GGCGGA	1 cut(s)	69
Eco47I	GGWCC	7 cut(s)	5, 14, 32, 41, 50, 77, 188
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoO109I	RGGNCCY	3 cut(s)	5, 32, 179
EcoRII	CCWGG	6 cut(s)	7, 28, 55, 73, 175, 184
FaeI	CATG	2 cut(s)	123, 207
FaiI	YATR	2 cut(s)	121, 205
FaqI	GGGAC	1 cut(s)	18
FatI	CATG	2 cut(s)	119, 203
Fnu4HI	GCNGC	4 cut(s)	67, 139, 142, 194
Fsp4HI	GCNGC	4 cut(s)	67, 139, 142, 194
GluI	GCNGC	4 cut(s)	67, 139, 142, 194
GsuI	CTGGAG	1 cut(s)	12
HaeIII	GGCC	4 cut(s)	69, 99, 172, 181
HapII	CCGG	2 cut(s)	39, 48
Hin1II	CATG	2 cut(s)	123, 207
HpaII	CCGG	2 cut(s)	39, 48
Hpy166II	GTNNAC	1 cut(s)	14
Hpy8I	GTNNAC	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	154
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
Hsp92II	CATG	2 cut(s)	123, 207
Lsp1109I	GCAGC	2 cut(s)	125, 128
MabI	ACCWGGT	1 cut(s)	7
MnlI	CCTC	9 cut(s)	27, 33, 36, 45, 54, 81, 93, 96, 192
MslI	CAYNNNNRTG	1 cut(s)	202
MspI	CCGG	2 cut(s)	39, 48
MspR9I	CCNGG	8 cut(s)	9, 30, 39, 48, 57, 75, 177, 186
MvaI	CCWGG	6 cut(s)	9, 30, 57, 75, 177, 186
MwoI	GCNNNNNNNGC	1 cut(s)	178
NciI	CCSGG	2 cut(s)	39, 48
NlaIII	CATG	2 cut(s)	123, 207
NlaIV	GGNNCC	1 cut(s)	6
PfoI	TCCNGGA	4 cut(s)	28, 37, 46, 184
PkrI	GCNGC	4 cut(s)	68, 140, 143, 195
PpuMI	RGGWCCY	2 cut(s)	5, 32
Psp5II	RGGWCCY	2 cut(s)	5, 32
Psp6I	CCWGG	6 cut(s)	7, 28, 55, 73, 175, 184
PspGI	CCWGG	6 cut(s)	7, 28, 55, 73, 175, 184
PspN4I	GGNNCC	1 cut(s)	6
PspPPI	RGGWCCY	2 cut(s)	5, 32
RseI	CAYNNNNRTG	1 cut(s)	202
Rsr2I	CGGWCCG	1 cut(s)	50
RsrII	CGGWCCG	1 cut(s)	50
SatI	GCNGC	4 cut(s)	67, 139, 142, 194
ScrFI	CCNGG	8 cut(s)	9, 30, 39, 48, 57, 75, 177, 186
SetI	ASST	7 cut(s)	10, 19, 25, 37, 46, 61, 202
SexAI	ACCWGGT	1 cut(s)	7
SfiI	GGCCNNNNNGGCC	1 cut(s)	178
SinI	GGWCC	7 cut(s)	5, 14, 32, 41, 50, 77, 188
SmiMI	CAYNNNNRTG	1 cut(s)	202
SsiI	CCGC	5 cut(s)	53, 66, 80, 191, 194
StyD4I	CCNGG	8 cut(s)	7, 28, 37, 46, 55, 73, 175, 184
TauI	GCSGC	2 cut(s)	69, 196
TseI	GCWGC	2 cut(s)	138, 141
TspDTI	ATGAA	1 cut(s)	108
VpaK11BI	GGWCC	7 cut(s)	5, 14, 32, 41, 50, 77, 188
XagI	CCTNNNNNAGG	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.