Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005173

Physical Location & Seq

Genomic Coordinates Forward (+)

14524888 .. 14527342

Gene Structure 2455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCATGGTCCGGGTGGAGGCGGCGGTCCAGGAGGAGGAGGGCCTGGTGGATGGGGTGGAGGGGGAGGACCGGGTGGTTGGGGTGGAGGTCCAGGACCGGGAGGACCGGGTGGTTGGGGCGGAGGGCATGGAGGAGGAGGGCCTGGTGGATGGGGTCCTGGAGGGGGTGGTCCTGGTGGATGGGGCCATGGGCCAGGAGGACCGGGAGGCTGGGGTCTTGGCCCGGGAGGACCATGGGGTCCTAGTCCGGGAGGACCTTGGGGACCGGGATTTGGCGGGGGATGGTGGGGCGGACCTGGTGGCTTCTTTGGTGGGTTTGGCAATGGCATATGTGAGATGATATCTTCTTGCTTCTACTGCTTGTGCTGCTGTTGTTTGCTAGATGAATGCTTCGGTGGACCTCGTGGCGGATATGGACCTCCTCCTCGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

12.93

Weight (kDa)

6.21

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005173)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g24810 FvH4_2g24820 FvH4_6g04120
malus_domestica	MD03G1276800.v1.1 MD04G1216200.v1.1 MD04G1216300.v1.1 MD11G1298900.v1.1
prunus_persica	Prupe.8G253200_v2.0.a1 Prupe.8G253200_v2.0.a1
pyrus_communis	pycom04g19210 pycom04g19220 pycom11g26250
rosa_chinensis	RchiOBHm_Chr3g0452671 RchiOBHm_Chr6g0292641
rosa_laevigata	RLG00000012002 RLG00000012003
rosa_roxburghii	Rroxscaffold_6G00429710 Rroxscaffold_7G00174830
rosa_rugosa	Rorug02G0642600 Rorug02G0642700 Rorug06G0228700
rosa_samantha	Rh3AG044800 Rh3BG047100 Rh3CG045600 Rh3DG046000 Rh6AG342000 Rh6BG349300 Rh6CG356200
rosa_wichuraiana	Rw3G003500 Rw6G029800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	237
AciI	CCGC	6 cut(s)	21, 24, 120, 276, 291, 408
AfiI	CCNNNNNNNGG	7 cut(s)	17, 35, 98, 164, 248, 272, 407
AjnI	CCWGG	8 cut(s)	28, 43, 91, 142, 157, 172, 193, 295
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	5 cut(s)	41, 140, 184, 191, 220
ApeKI	GCWGC	1 cut(s)	366
AsuC2I	CCSGG	9 cut(s)	12, 72, 99, 108, 204, 224, 225, 249, 267
AvaI	CYCGRG	1 cut(s)	223
BauI	CACGAG	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	353
BccI	CCATC	4 cut(s)	45, 144, 174, 276
BciT130I	CCWGG	8 cut(s)	30, 45, 93, 144, 159, 174, 195, 297
BcnI	CCSGG	9 cut(s)	12, 72, 99, 108, 204, 224, 225, 249, 267
BfaI	CTAG	2 cut(s)	243, 380
BisI	GCNGC	2 cut(s)	22, 367
BlsI	GCNGC	2 cut(s)	23, 368
BmeT110I	CYCGRG	1 cut(s)	223
BmiI	GGNNCC	4 cut(s)	156, 185, 240, 264
BpmI	CTGGAG	1 cut(s)	180
BpuMI	CCSGG	9 cut(s)	12, 72, 99, 108, 204, 224, 225, 249, 267
BsaJI	CCNNGG	4 cut(s)	187, 223, 233, 257
Bsc4I	CCNNNNNNNGG	7 cut(s)	17, 35, 98, 164, 248, 272, 407
Bse3DI	GCAATG	1 cut(s)	328
BseBI	CCWGG	8 cut(s)	30, 45, 93, 144, 159, 174, 195, 297
BseDI	CCNNGG	4 cut(s)	187, 223, 233, 257
BseGI	GGATG	4 cut(s)	56, 155, 185, 287
BseLI	CCNNNNNNNGG	7 cut(s)	17, 35, 98, 164, 248, 272, 407
BseMI	GCAATG	1 cut(s)	328
BseRI	GAGGAG	6 cut(s)	48, 51, 147, 150, 411, 414
BseXI	GCAGC	1 cut(s)	353
BseYI	CCCAGC	1 cut(s)	210
BshFI	GGCC	5 cut(s)	43, 142, 186, 193, 222
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	8 cut(s)	11, 71, 98, 107, 203, 224, 248, 266
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	7 cut(s)	17, 35, 98, 164, 248, 272, 407
BsmFI	GGGAC	1 cut(s)	276
BsmI	GAATGC	1 cut(s)	392
BsnI	GGCC	5 cut(s)	43, 142, 186, 193, 222
BsoBI	CYCGRG	1 cut(s)	223
Bsp19I	CCATGG	2 cut(s)	187, 233
BspACI	CCGC	6 cut(s)	21, 24, 120, 276, 291, 408
BspANI	GGCC	5 cut(s)	43, 142, 186, 193, 222
BspLI	GGNNCC	4 cut(s)	156, 185, 240, 264
BsrDI	GCAATG	1 cut(s)	328
BssECI	CCNNGG	4 cut(s)	187, 223, 233, 257
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	3 cut(s)	187, 233, 257
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	8 cut(s)	30, 45, 93, 144, 159, 174, 195, 297
BstDSI	CCRYGG	2 cut(s)	187, 233
BstF5I	GGATG	4 cut(s)	56, 155, 185, 287
BstMWI	GCNNNNNNNGC	2 cut(s)	357, 366
BstNI	CCWGG	8 cut(s)	30, 45, 93, 144, 159, 174, 195, 297
BstV1I	GCAGC	1 cut(s)	353
BsuRI	GGCC	5 cut(s)	43, 142, 186, 193, 222
BtgI	CCRYGG	2 cut(s)	187, 233
BtsCI	GGATG	4 cut(s)	56, 155, 185, 287
Cfr9I	CCCGGG	1 cut(s)	223
CsiI	ACCWGGT	1 cut(s)	295
CviAII	CATG	4 cut(s)	5, 128, 188, 234
CviJI	RGCY	7 cut(s)	43, 142, 186, 193, 210, 222, 303
CviKI_1	RGCY	7 cut(s)	43, 142, 186, 193, 210, 222, 303
DrdI	GACNNNNNNGTC	1 cut(s)	237
DseDI	GACNNNNNNGTC	1 cut(s)	237
EciI	GGCGGA	3 cut(s)	135, 306, 423
Eco130I	CCWWGG	3 cut(s)	187, 233, 257
Eco32I	GATATC	1 cut(s)	342
Eco88I	CYCGRG	1 cut(s)	223
EcoO109I	RGGNCCY	5 cut(s)	41, 140, 155, 239, 254
EcoRII	CCWGG	8 cut(s)	28, 43, 91, 142, 157, 172, 193, 295
EcoRV	GATATC	1 cut(s)	342
EcoT14I	CCWWGG	3 cut(s)	187, 233, 257
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	3 cut(s)	187, 233, 257
FaeI	CATG	4 cut(s)	8, 131, 191, 237
FaiI	YATR	7 cut(s)	6, 129, 189, 235, 329, 331, 414
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	4 cut(s)	4, 127, 187, 233
FauI	CCCGC	1 cut(s)	269
FauNDI	CATATG	1 cut(s)	329
Fnu4HI	GCNGC	2 cut(s)	22, 367
FokI	GGATG	4 cut(s)	63, 162, 192, 294
Fsp4HI	GCNGC	2 cut(s)	22, 367
FspBI	CTAG	2 cut(s)	243, 380
GluI	GCNGC	2 cut(s)	22, 367
GsaI	CCCAGC	1 cut(s)	214
GsuI	CTGGAG	1 cut(s)	180
HaeIII	GGCC	5 cut(s)	43, 142, 186, 193, 222
HapII	CCGG	8 cut(s)	11, 71, 98, 107, 203, 224, 248, 266
Hin1II	CATG	4 cut(s)	8, 131, 191, 237
HpaII	CCGG	8 cut(s)	11, 71, 98, 107, 203, 224, 248, 266
Hpy166II	GTNNAC	1 cut(s)	398
Hpy8I	GTNNAC	1 cut(s)	398
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	357, 366
Hsp92II	CATG	4 cut(s)	8, 131, 191, 237
Lsp1109I	GCAGC	1 cut(s)	353
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	2 cut(s)	243, 380
MboII	GAAGA	1 cut(s)	336
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	8 cut(s)	11, 71, 98, 107, 203, 224, 248, 266
Mva1269I	GAATGC	1 cut(s)	392
MvaI	CCWGG	8 cut(s)	30, 45, 93, 144, 159, 174, 195, 297
MwoI	GCNNNNNNNGC	2 cut(s)	357, 366
NciI	CCSGG	9 cut(s)	12, 72, 99, 108, 204, 224, 225, 249, 267
NcoI	CCATGG	2 cut(s)	187, 233
NdeI	CATATG	1 cut(s)	329
NlaIII	CATG	4 cut(s)	8, 131, 191, 237
NlaIV	GGNNCC	4 cut(s)	156, 185, 240, 264
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	392
PfoI	TCCNGGA	4 cut(s)	28, 91, 157, 247
PkrI	GCNGC	2 cut(s)	23, 368
PpuMI	RGGWCCY	3 cut(s)	155, 239, 254
Psp5II	RGGWCCY	3 cut(s)	155, 239, 254
Psp6I	CCWGG	8 cut(s)	28, 43, 91, 142, 157, 172, 193, 295
PspFI	CCCAGC	1 cut(s)	210
PspGI	CCWGG	8 cut(s)	28, 43, 91, 142, 157, 172, 193, 295
PspN4I	GGNNCC	4 cut(s)	156, 185, 240, 264
PspPPI	RGGWCCY	3 cut(s)	155, 239, 254
SatI	GCNGC	2 cut(s)	22, 367
SetI	ASST	5 cut(s)	91, 259, 298, 403, 421
SexAI	ACCWGGT	1 cut(s)	295
SmaI	CCCGGG	1 cut(s)	225
SsiI	CCGC	6 cut(s)	21, 24, 120, 276, 291, 408
SspMI	CTAG	2 cut(s)	243, 380
StyI	CCWWGG	3 cut(s)	187, 233, 257
TauI	GCSGC	1 cut(s)	24
TseI	GCWGC	1 cut(s)	366
TspDTI	ATGAA	1 cut(s)	399
TspMI	CCCGGG	1 cut(s)	223
XmaI	CCCGGG	1 cut(s)	223
XspI	CTAG	2 cut(s)	243, 380
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.