Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Reverse (-)

20679601 .. 20685713

Gene Structure 6113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g25540.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGAGTCGTCATCCTGAGGTGAAGTGGGCCCAGAGGGAGGACAAGGTCTTCCTTACTGTGCTTCTCCCCGACGCCAAGGACGCCAAGGTCAAGCTCGAGCCTGAAGGTACTTTCATCTTCTCTGCTTGCGCCGGCGCCGGGGATAACCAGTATGAGCTGAAGCTCGACCTTTTCGACAAGGTTGATGTCGAGGAGAGCAAAATAAGTATCGGTGTGAGGAGTATCGTGTGTATTGTGGAGAAGGCGGAGAAGGTTTGGTGGAGTAGGCTGTTGAAAGAACAGGGAAGGACACCGCATTATGTCAAGATAGATTGGGACAAGTGGGTCGACGAAGATGAGGATCCTCCAGCAGCTGGTGCTGATGACATGGGTATGGGAGGCATGGATTTCTCGAAATTTGGTGGCATGGGAGGTGATGATGCAATGGGAGGCATGGGTGGACTTGGCGGCATGGGCGGAATGGGCGGCATGGGTGGAATGGGGGGCATGGATTTCTCTAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGCGGGATGGATTTCTCTAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGGATTTCTCGAAATTTGCTGGCATGGGAGGTGATGGTGCACCGGGTGACTTTGATGATAGTGATGATGATCAAGAAGTTTCCAAGCCAGGAGAATCAGATGCTGCAAAGAGTGAAGCTGTTCCCTCAGGAGAGAAAAAGGAAGCTGCATCAAGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

250

Amino Acids

25.99

Weight (kDa)

4.39

Isoelectric Point (pI)

30.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	5 - 81	5.1e-12	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	86, 323
AccB1I	GGYRCC	1 cut(s)	134
AccB7I	CCANNNNNTGG	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	327
AciI	CCGC	6 cut(s)	245, 293, 447, 456, 465, 534
AclWI	GGATC	2 cut(s)	335, 348
AcsI	RAATTY	2 cut(s)	395, 602
AcuI	CTGAAG	2 cut(s)	123, 179
AcyI	GRCGYC	3 cut(s)	72, 81, 135
AdeI	CACNNNGTG	1 cut(s)	635
AfaI	GTAC	1 cut(s)	109
AfiI	CCNNNNNNNGG	3 cut(s)	37, 138, 353
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	676
AluBI	AGCT	6 cut(s)	94, 157, 163, 353, 707, 734
AluI	AGCT	6 cut(s)	94, 157, 163, 353, 707, 734
Alw21I	GWGCWC	1 cut(s)	631
Alw44I	GTGCAC	1 cut(s)	627
AlwI	GGATC	2 cut(s)	335, 348
AlwNI	CAGNNNCTG	2 cut(s)	353, 692
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	27
ApaI	GGGCCC	1 cut(s)	31
ApaLI	GTGCAC	1 cut(s)	627
ApeKI	GCWGC	3 cut(s)	350, 692, 734
ApoI	RAATTY	2 cut(s)	395, 602
Asp700I	GAANNNNTTC	1 cut(s)	708
AspLEI	GCGC	2 cut(s)	131, 137
AspS9I	GGNCC	2 cut(s)	27, 28
AsuC2I	CCSGG	2 cut(s)	139, 633
AsuHPI	GGTGA	6 cut(s)	31, 425, 530, 581, 632, 647
AvaI	CYCGRG	1 cut(s)	95
AxyI	CCTNAGG	2 cut(s)	15, 715
BaeGI	GKGCMC	2 cut(s)	31, 631
BamHI	GGATCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	631
BbvI	GCAGC	3 cut(s)	362, 679, 721
BccI	CCATC	3 cut(s)	532, 583, 617
BciT130I	CCWGG	1 cut(s)	678
BclI	TGATCA	1 cut(s)	658
BcnI	CCSGG	2 cut(s)	139, 633
BfoI	RGCGCY	1 cut(s)	138
BisI	GCNGC	5 cut(s)	351, 448, 466, 693, 735
BlsI	GCNGC	5 cut(s)	352, 449, 467, 694, 736
Bme1390I	CCNGG	3 cut(s)	139, 633, 678
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	27, 28
BmiI	GGNNCC	3 cut(s)	29, 136, 342
BmrFI	CCNGG	3 cut(s)	139, 633, 678
BmsI	GCATC	3 cut(s)	409, 679, 746
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	330
BpuMI	CCSGG	2 cut(s)	139, 633
BsaBI	GATNNNNATC	2 cut(s)	339, 657
BsaHI	GRCGYC	3 cut(s)	72, 81, 135
BsaJI	CCNNGG	3 cut(s)	75, 84, 138
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 138, 353
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	148
Bse21I	CCTNAGG	2 cut(s)	15, 715
Bse3DI	GCAATG	1 cut(s)	429
Bse8I	GATNNNNATC	2 cut(s)	339, 657
BseBI	CCWGG	1 cut(s)	678
BseDI	CCNNGG	3 cut(s)	75, 84, 138
BseGI	GGATG	3 cut(s)	10, 543, 594
BseJI	GATNNNNATC	2 cut(s)	339, 657
BseLI	CCNNNNNNNGG	3 cut(s)	37, 138, 353
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	2 cut(s)	6, 729
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	2 cut(s)	206, 232
BseSI	GKGCMC	2 cut(s)	31, 631
BseXI	GCAGC	3 cut(s)	362, 679, 721
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	134
BsiHKAI	GWGCWC	1 cut(s)	631
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	3 cut(s)	132, 138, 632
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	37, 138, 353
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	29
BsoBI	CYCGRG	1 cut(s)	95
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	31, 631
Bsp143I	GATC	2 cut(s)	340, 658
BspACI	CCGC	6 cut(s)	245, 293, 447, 456, 465, 534
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	7, 728
BspLI	GGNNCC	3 cut(s)	29, 136, 342
BspPI	GGATC	2 cut(s)	335, 348
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	3 cut(s)	75, 84, 138
BssMI	GATC	2 cut(s)	340, 658
BssNI	GRCGYC	3 cut(s)	72, 81, 135
BssT1I	CCWWGG	2 cut(s)	75, 84
Bst2UI	CCWGG	1 cut(s)	678
Bst4CI	ACNGT	1 cut(s)	58
BstACI	GRCGYC	3 cut(s)	72, 81, 135
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	5 cut(s)	127, 133, 508, 559, 610
BstDEI	CTNAG	2 cut(s)	15, 715
BstF5I	GGATG	3 cut(s)	10, 543, 594
BstH2I	RGCGCY	1 cut(s)	138
BstHHI	GCGC	2 cut(s)	131, 137
BstKTI	GATC	2 cut(s)	343, 661
BstMBI	GATC	2 cut(s)	340, 658
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 356, 453, 462
BstNI	CCWGG	1 cut(s)	678
BstSCI	CCNGG	3 cut(s)	137, 631, 676
BstSLI	GKGCMC	2 cut(s)	31, 631
BstV1I	GCAGC	3 cut(s)	362, 679, 721
BstV2I	GAAGAC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu36I	CCTNAGG	2 cut(s)	15, 715
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	3 cut(s)	10, 543, 594
Cac8I	GCNNGC	5 cut(s)	127, 133, 508, 559, 610
CaiI	CAGNNNCTG	2 cut(s)	353, 692
CfoI	GCGC	2 cut(s)	131, 137
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	27, 28
CseI	GACGC	2 cut(s)	80, 89
Csp6I	GTAC	1 cut(s)	108
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	2 cut(s)	15, 715
DinI	GGCGCC	1 cut(s)	136
DpnI	GATC	2 cut(s)	342, 660
DpnII	GATC	2 cut(s)	340, 658
DraIII	CACNNNGTG	1 cut(s)	635
DrdI	GACNNNNNNGTC	2 cut(s)	86, 323
DseDI	GACNNNNNNGTC	2 cut(s)	86, 323
EciI	GGCGGA	2 cut(s)	260, 471
Eco130I	CCWWGG	2 cut(s)	75, 84
Eco24I	GRGCYC	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	123, 179
Eco81I	CCTNAGG	2 cut(s)	15, 715
Eco88I	CYCGRG	1 cut(s)	95
EcoRII	CCWGG	1 cut(s)	676
EcoT14I	CCWWGG	2 cut(s)	75, 84
EcoT38I	GRGCYC	1 cut(s)	31
EgeI	GGCGCC	1 cut(s)	136
EheI	GGCGCC	1 cut(s)	136
ErhI	CCWWGG	2 cut(s)	75, 84
FaqI	GGGAC	1 cut(s)	329
FauI	CCCGC	1 cut(s)	527
FbaI	TGATCA	1 cut(s)	658
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	5 cut(s)	351, 448, 466, 693, 735
FokI	GGATG	2 cut(s)	550, 601
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	5 cut(s)	351, 448, 466, 693, 735
GlaI	GCGC	2 cut(s)	130, 136
GluI	GCNGC	5 cut(s)	351, 448, 466, 693, 735
GsuI	CTGGAG	1 cut(s)	330
HaeII	RGCGCY	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	3 cut(s)	132, 138, 632
HgaI	GACGC	2 cut(s)	80, 89
HhaI	GCGC	2 cut(s)	131, 137
Hin1I	GRCGYC	3 cut(s)	72, 81, 135
Hin6I	GCGC	2 cut(s)	129, 135
HinP1I	GCGC	2 cut(s)	129, 135
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	4, 683
HpaII	CCGG	3 cut(s)	132, 138, 632
HphI	GGTGA	6 cut(s)	31, 425, 530, 581, 632, 647
Hpy166II	GTNNAC	3 cut(s)	328, 440, 629
Hpy188I	TCNGA	1 cut(s)	688
Hpy188III	TCNNGA	6 cut(s)	14, 304, 391, 598, 662, 717
Hpy8I	GTNNAC	3 cut(s)	328, 440, 629
Hpy99I	CGWCG	2 cut(s)	74, 332
HpyAV	CCTTC	6 cut(s)	98, 235, 244, 279, 515, 566
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	4 cut(s)	422, 629, 695, 737
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 356, 453, 462
HpyF3I	CTNAG	2 cut(s)	15, 715
Hsp92I	GRCGYC	3 cut(s)	72, 81, 135
HspAI	GCGC	2 cut(s)	129, 135
KasI	GGCGCC	1 cut(s)	134
KroI	GCCGGC	1 cut(s)	131
KroNI	GCCGGC	1 cut(s)	133
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	2 cut(s)	340, 658
Lsp1109I	GCAGC	3 cut(s)	362, 679, 721
LweI	GCATC	3 cut(s)	409, 679, 746
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	2 cut(s)	342, 660
MboI	GATC	2 cut(s)	340, 658
MboII	GAAGA	3 cut(s)	40, 109, 344
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	31, 631
MluCI	AATT	2 cut(s)	395, 602
Mly113I	GGCGCC	1 cut(s)	135
MlyI	GAGTC	1 cut(s)	13
MreI	CGCCGGCG	1 cut(s)	131
MroNI	GCCGGC	1 cut(s)	131
MroXI	GAANNNNTTC	1 cut(s)	708
MslI	CAYNNNNRTG	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	3 cut(s)	132, 138, 632
MspR9I	CCNGG	3 cut(s)	139, 633, 678
MvaI	CCWGG	1 cut(s)	678
MwoI	GCNNNNNNNGC	4 cut(s)	80, 356, 453, 462
NaeI	GCCGGC	1 cut(s)	133
NarI	GGCGCC	1 cut(s)	135
NciI	CCSGG	2 cut(s)	139, 633
NdeII	GATC	2 cut(s)	340, 658
NgoMIV	GCCGGC	1 cut(s)	131
NlaIV	GGNNCC	3 cut(s)	29, 136, 342
NmuCI	GTSAC	1 cut(s)	635
PaeR7I	CTCGAG	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdiI	GCCGGC	1 cut(s)	133
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	1 cut(s)	683
PflFI	GACNNNGTC	1 cut(s)	44
PflMI	CCANNNNNTGG	1 cut(s)	353
PkrI	GCNGC	5 cut(s)	352, 449, 467, 694, 736
PleI	GAGTC	1 cut(s)	12
PluTI	GGCGCC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	676
PspGI	CCWGG	1 cut(s)	676
PspN4I	GGNNCC	3 cut(s)	29, 136, 342
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	27, 28
PspXI	VCTCGAGB	1 cut(s)	95
PstNI	CAGNNNCTG	2 cut(s)	353, 692
PsuI	RGATCY	1 cut(s)	340
PsyI	GACNNNGTC	1 cut(s)	44
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	1 cut(s)	371
SalI	GTCGAC	1 cut(s)	326
SatI	GCNGC	5 cut(s)	351, 448, 466, 693, 735
Sau3AI	GATC	2 cut(s)	340, 658
Sau96I	GGNCC	2 cut(s)	27, 28
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	3 cut(s)	139, 633, 678
SduI	GDGCHC	2 cut(s)	31, 631
SfaNI	GCATC	3 cut(s)	409, 679, 746
SfoI	GGCGCC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	95
SgrAI	CRCCGGYG	1 cut(s)	131
SlaI	CTCGAG	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	395, 602
SsiI	CCGC	6 cut(s)	245, 293, 447, 456, 465, 534
SspDI	GGCGCC	1 cut(s)	134
StyD4I	CCNGG	3 cut(s)	137, 631, 676
StyI	CCWWGG	2 cut(s)	75, 84
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	7 cut(s)	96, 165, 174, 189, 327, 392, 599
TasI	AATT	2 cut(s)	395, 602
TauI	GCSGC	2 cut(s)	450, 468
TfiI	GAWTC	1 cut(s)	683
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	3 cut(s)	350, 692, 734
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	44
Van91I	CCANNNNNTGG	1 cut(s)	353
VneI	GTGCAC	1 cut(s)	627
XapI	RAATTY	2 cut(s)	395, 602
XhoI	CTCGAG	1 cut(s)	95
XmiI	GTMKAC	1 cut(s)	327
XmnI	GAANNNNTTC	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.