Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Forward (+)

13832428 .. 13834835

Gene Structure 2408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011925

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAGTCGTCATCCTGAGGTGAAGTGGGCCCAGAGGGAGGACAAGGTTTTCCTTACTGTGCTTCTGCCCGATGCCAAGGACGCTAAGGTTAAGCTTGAGCCTGAAGGTGTTTTCATCTTCTCTGCTAGTGCCGGTGCAGAGAATCACCAATATGAGCTCAAACTCGACCTTTTCGACAAGGTTAATGTAGAGGAAAGCAAAATAAGTATTGGAGTGAGGAGTATTGTCTGTATTGTGGAGAAGGCAGAGAAAGTTTGGTGGAGTAAGCTACTGAAAGGAAGTGGAAAGACACCGCATTATGTCAAAGTAGATTGGGACAAATGGGTGGACGAAGACGAGGATCCTCCAGCGGCAGGTGCTGATGACATGGGTATGGGAGGCATGGATTTCTCGAAATTTGGTGGCATGGGAGGTGATGATGCAATGGGAGGGATGGGTGGACTGGGTGGTATGGGTGGTATGGGCGGGATGGATTTCTCGAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGGATTTCTCGAAATTTGCTGGCATGGGAGGTGATGGTGCAATGGGCGACTTTGATGATAGTGATGATGACCAAGAAGTGTCCAAGCCAGGAGATTCGGATGCTAGCAAGAGTGAAGTTGATTCCTCAGGAGAGAAAAAGGAAGCTACACCAAGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

227

Amino Acids

23.91

Weight (kDa)

4.46

Isoelectric Point (pI)

25.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	5 - 81	8e-13	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	344
AciI	CCGC	3 cut(s)	293, 350, 465
AclWI	GGATC	2 cut(s)	335, 348
AcsI	RAATTY	2 cut(s)	395, 533
AcuI	CTGAAG	1 cut(s)	123
AfiI	CCNNNNNNNGG	2 cut(s)	37, 353
AjnI	CCWGG	1 cut(s)	607
AluBI	AGCT	4 cut(s)	94, 157, 268, 665
AluI	AGCT	4 cut(s)	94, 157, 268, 665
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	335, 348
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	27
ApaI	GGGCCC	1 cut(s)	31
ApoI	RAATTY	2 cut(s)	395, 533
AspS9I	GGNCC	2 cut(s)	27, 28
AsuHPI	GGTGA	5 cut(s)	31, 137, 425, 512, 563
AsuNHI	GCTAGC	1 cut(s)	623
AxyI	CCTNAGG	2 cut(s)	15, 646
BaeGI	GKGCMC	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	340
BanII	GRGCYC	2 cut(s)	31, 159
BbsI	GAAGAC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	159
BccI	CCATC	4 cut(s)	427, 463, 514, 548
BciT130I	CCWGG	1 cut(s)	609
BfaI	CTAG	2 cut(s)	126, 624
BfuAI	ACCTGC	1 cut(s)	344
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	609
BmgT120I	GGNCC	2 cut(s)	27, 28
BmiI	GGNNCC	2 cut(s)	29, 342
BmrFI	CCNGG	1 cut(s)	609
BmrI	ACTGGG	1 cut(s)	452
BmsI	GCATC	3 cut(s)	61, 409, 610
BmtI	GCTAGC	1 cut(s)	627
BmuI	ACTGGG	1 cut(s)	452
BpiI	GAAGAC	1 cut(s)	339
BpmI	CTGGAG	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 353
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	447
Bse21I	CCTNAGG	2 cut(s)	15, 646
Bse3DI	GCAATG	2 cut(s)	429, 567
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	5 cut(s)	10, 438, 474, 525, 625
BseLI	CCNNNNNNNGG	2 cut(s)	37, 353
BseMI	GCAATG	2 cut(s)	429, 567
BseMII	CTCAG	2 cut(s)	6, 660
BseNI	ACTGG	1 cut(s)	447
BseRI	GAGGAG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	37, 353
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	29
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	31, 159
Bsp143I	GATC	1 cut(s)	340
BspACI	CCGC	3 cut(s)	293, 350, 465
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	7, 659
BspLI	GGNNCC	2 cut(s)	29, 342
BspMI	ACCTGC	1 cut(s)	344
BspOI	GCTAGC	1 cut(s)	627
BspPI	GGATC	2 cut(s)	335, 348
BsrDI	GCAATG	2 cut(s)	429, 567
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	447
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	1 cut(s)	340
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	1 cut(s)	58
BstC8I	GCNNGC	3 cut(s)	490, 541, 625
BstDEI	CTNAG	3 cut(s)	15, 84, 646
BstF5I	GGATG	5 cut(s)	10, 438, 474, 525, 625
BstKTI	GATC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	340
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 356
BstNI	CCWGG	1 cut(s)	609
BstSCI	CCNGG	1 cut(s)	607
BstSLI	GKGCMC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu36I	CCTNAGG	2 cut(s)	15, 646
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	5 cut(s)	10, 438, 474, 525, 625
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	3 cut(s)	490, 541, 625
CaiI	CAGNNNCTG	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	27, 28
CseI	GACGC	1 cut(s)	89
CviAII	CATG	6 cut(s)	367, 382, 406, 493, 544, 678
CviJI	RGCY	7 cut(s)	29, 94, 100, 157, 268, 607, 665
CviKI_1	RGCY	7 cut(s)	29, 94, 100, 157, 268, 607, 665
DdeI	CTNAG	3 cut(s)	15, 84, 646
DpnI	GATC	1 cut(s)	342
DpnII	GATC	1 cut(s)	340
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	31, 159
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	123
Eco81I	CCTNAGG	2 cut(s)	15, 646
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	31, 159
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	6 cut(s)	370, 385, 409, 496, 547, 681
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	6 cut(s)	366, 381, 405, 492, 543, 677
FauI	CCCGC	1 cut(s)	458
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	4 cut(s)	445, 481, 532, 632
FriOI	GRGCYC	2 cut(s)	31, 159
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	2 cut(s)	126, 624
GluI	GCNGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	6 cut(s)	370, 385, 409, 496, 547, 681
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	4 cut(s)	4, 142, 614, 641
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	5 cut(s)	31, 137, 425, 512, 563
Hpy166II	GTNNAC	2 cut(s)	328, 440
Hpy188I	TCNGA	1 cut(s)	619
Hpy188III	TCNNGA	5 cut(s)	14, 391, 478, 529, 648
Hpy8I	GTNNAC	2 cut(s)	328, 440
HpyAV	CCTTC	3 cut(s)	98, 235, 497
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	137, 422, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 356
HpyF3I	CTNAG	3 cut(s)	15, 84, 646
Hsp92II	CATG	6 cut(s)	370, 385, 409, 496, 547, 681
Kzo9I	GATC	1 cut(s)	340
LweI	GCATC	3 cut(s)	61, 409, 610
MaeI	CTAG	2 cut(s)	126, 624
MalI	GATC	1 cut(s)	342
MboI	GATC	1 cut(s)	340
MboII	GAAGA	2 cut(s)	109, 344
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	31, 159
MluCI	AATT	2 cut(s)	395, 533
MlyI	GAGTC	1 cut(s)	13
MseI	TTAA	2 cut(s)	90, 183
MslI	CAYNNNNRTG	2 cut(s)	150, 371
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	609
MvaI	CCWGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	2 cut(s)	80, 356
NdeII	GATC	1 cut(s)	340
NheI	GCTAGC	1 cut(s)	623
NlaIII	CATG	6 cut(s)	370, 385, 409, 496, 547, 681
NlaIV	GGNNCC	2 cut(s)	29, 342
PaqCI	CACCTGC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PfeI	GAWTC	3 cut(s)	142, 614, 641
PkrI	GCNGC	1 cut(s)	352
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	607
PspGI	CCWGG	1 cut(s)	607
PspN4I	GGNNCC	2 cut(s)	29, 342
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	27, 28
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	340
RseI	CAYNNNNRTG	2 cut(s)	150, 371
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	90, 183
SatI	GCNGC	1 cut(s)	351
Sau3AI	GATC	1 cut(s)	340
Sau96I	GGNCC	2 cut(s)	27, 28
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	609
SduI	GDGCHC	2 cut(s)	31, 159
SfaNI	GCATC	3 cut(s)	61, 409, 610
SmiMI	CAYNNNNRTG	2 cut(s)	150, 371
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	2 cut(s)	395, 533
SsiI	CCGC	3 cut(s)	293, 350, 465
SspMI	CTAG	2 cut(s)	126, 624
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	607
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	5 cut(s)	165, 174, 392, 479, 530
TasI	AATT	2 cut(s)	395, 533
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	3 cut(s)	142, 614, 641
Tru1I	TTAA	2 cut(s)	90, 183
Tru9I	TTAA	2 cut(s)	90, 183
TspDTI	ATGAA	1 cut(s)	103
XapI	RAATTY	2 cut(s)	395, 533
XspI	CTAG	2 cut(s)	126, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.