Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Reverse (-)

21993519 .. 21996043

Gene Structure 2525 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G259700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGAGTCGTCATCCTGAGGTGAAGTGGGCCCAAAGGGTGGACAAGGTTTTCATTACTGTGCTTTTGCCTGATGCAAAGGACGCTAAGGTTAAACTTGAACCTGATGGAGTTTTTAGTTTTTCTGCTAGTGCCGGTGCAGAGAATCACCATTATGAACTGAAACTGGATCTTTTTGATAAGGTTAATGTGGAGGAAAGCAAAATAAATGTTGGAGTGAGGAGTATCTTCTGTATCTTGGAGAAGGCAGAGAAAGTTTGGTGGAAGAAGCTTTTGCGTGGAGATGGAAAGACACCCCATTATGTCAAAGTAGATTGGGACAAATGGGTGGATGAAGACGAGGATACTGGATCAGGTCCGAGTGACTTGGATTTGGGAGGGATGGATTTCTCGAAATTTGGTGGCATGGGAGGTGATGATGCAATGGGTGACTTTGATGATAGTGACGAAGACCTAGAATTGCCAAAGCCAGGAGAACAGGACTATGACAAGAACGAAGCAGAAGAGATTGGAGATGATCCTTCGGAAGAGAAGAAGGAAGAGAAAAAGGAAGCTGCAGGGACCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

189

Amino Acids

21.07

Weight (kDa)

4.49

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	37
AclWI	GGATC	3 cut(s)	174, 355, 509
AcsI	RAATTY	1 cut(s)	392
AfiI	CCNNNNNNNGG	2 cut(s)	37, 467
AgsI	TTSAA	1 cut(s)	98
AjnI	CCWGG	1 cut(s)	466
AluBI	AGCT	2 cut(s)	268, 551
AluI	AGCT	2 cut(s)	268, 551
AlwI	GGATC	3 cut(s)	174, 355, 509
AoxI	GGCC	1 cut(s)	27
ApaI	GGGCCC	1 cut(s)	31
ApeKI	GCWGC	1 cut(s)	551
ApoI	RAATTY	1 cut(s)	392
AspS9I	GGNCC	4 cut(s)	27, 28, 353, 558
AsuHPI	GGTGA	4 cut(s)	31, 137, 422, 437
AvaII	GGWCC	2 cut(s)	353, 558
AxyI	CCTNAGG	1 cut(s)	15
BaeGI	GKGCMC	1 cut(s)	31
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	2 cut(s)	339, 453
BbvI	GCAGC	1 cut(s)	538
BccI	CCATC	3 cut(s)	98, 275, 373
BciT130I	CCWGG	1 cut(s)	468
BciVI	GTATCC	1 cut(s)	334
BfaI	CTAG	2 cut(s)	126, 452
BfmI	CTRYAG	1 cut(s)	552
BfuI	GTATCC	1 cut(s)	334
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
Bme1390I	CCNGG	1 cut(s)	468
Bme18I	GGWCC	2 cut(s)	353, 558
BmgT120I	GGNCC	4 cut(s)	27, 28, 353, 558
BmiI	GGNNCC	2 cut(s)	29, 559
BmrFI	CCNGG	1 cut(s)	468
BmsI	GCATC	2 cut(s)	61, 406
BpiI	GAAGAC	2 cut(s)	339, 453
Bpu10I	CCTNAGC	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 467
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	2 cut(s)	168, 349
Bse21I	CCTNAGG	1 cut(s)	15
Bse3DI	GCAATG	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	468
BseGI	GGATG	3 cut(s)	10, 334, 384
BseLI	CCNNNNNNNGG	2 cut(s)	37, 467
BseMI	GCAATG	1 cut(s)	426
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	2 cut(s)	168, 349
BseRI	GAGGAG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	538
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	37, 467
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	29
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	166, 347, 514
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	29, 559
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	3 cut(s)	174, 355, 509
BsrDI	GCAATG	1 cut(s)	426
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	168, 349
BssAI	RCCGGY	1 cut(s)	131
BssMI	GATC	3 cut(s)	166, 347, 514
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	3 cut(s)	495, 519, 531
BstDEI	CTNAG	2 cut(s)	15, 84
BstF5I	GGATG	3 cut(s)	10, 334, 384
BstKTI	GATC	3 cut(s)	169, 350, 517
BstMBI	GATC	3 cut(s)	166, 347, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstNI	CCWGG	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	466
BstSFI	CTRYAG	1 cut(s)	552
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	1 cut(s)	538
BstV2I	GAAGAC	2 cut(s)	339, 453
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
Bsu36I	CCTNAGG	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	3 cut(s)	10, 334, 384
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	4 cut(s)	27, 28, 353, 558
CseI	GACGC	1 cut(s)	89
CviAII	CATG	1 cut(s)	403
CviJI	RGCY	4 cut(s)	29, 268, 466, 551
CviKI_1	RGCY	4 cut(s)	29, 268, 466, 551
DdeI	CTNAG	2 cut(s)	15, 84
DpnI	GATC	3 cut(s)	168, 349, 516
DpnII	GATC	3 cut(s)	166, 347, 514
Eam1104I	CTCTTC	3 cut(s)	495, 519, 531
EarI	CTCTTC	3 cut(s)	495, 519, 531
Eco24I	GRGCYC	1 cut(s)	31
Eco47I	GGWCC	2 cut(s)	353, 558
Eco81I	CCTNAGG	1 cut(s)	15
EcoRII	CCWGG	1 cut(s)	466
EcoT38I	GRGCYC	1 cut(s)	31
FaeI	CATG	1 cut(s)	406
FaiI	YATR	5 cut(s)	153, 300, 404, 483, 565
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	2 cut(s)	341, 391
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	2 cut(s)	126, 452
GluI	GCNGC	1 cut(s)	552
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	1 cut(s)	406
HindIII	AAGCTT	1 cut(s)	266
HinfI	GANTC	2 cut(s)	4, 142
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	4 cut(s)	31, 137, 422, 437
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188I	TCNGA	2 cut(s)	357, 523
Hpy188III	TCNNGA	2 cut(s)	14, 388
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	3 cut(s)	235, 526, 528
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	4 cut(s)	74, 137, 419, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	15, 84
Hsp92II	CATG	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	166, 347, 514
Lsp1109I	GCAGC	1 cut(s)	538
LweI	GCATC	2 cut(s)	61, 406
MaeI	CTAG	2 cut(s)	126, 452
MaeIII	GTNAC	3 cut(s)	359, 425, 440
MalI	GATC	3 cut(s)	168, 349, 516
MboI	GATC	3 cut(s)	166, 347, 514
MboII	GAAGA	8 cut(s)	217, 274, 344, 458, 512, 536, 541, 548
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	2 cut(s)	392, 455
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	6 cut(s)	10, 184, 210, 331, 368, 401
MseI	TTAA	2 cut(s)	90, 183
MslI	CAYNNNNRTG	2 cut(s)	56, 150
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	468
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	3 cut(s)	166, 347, 514
NlaIII	CATG	1 cut(s)	406
NlaIV	GGNNCC	2 cut(s)	29, 559
NmuCI	GTSAC	3 cut(s)	359, 425, 440
PfeI	GAWTC	1 cut(s)	142
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	553
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	2 cut(s)	29, 559
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	4 cut(s)	27, 28, 353, 558
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	166
RseI	CAYNNNNRTG	2 cut(s)	56, 150
SaqAI	TTAA	2 cut(s)	90, 183
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	3 cut(s)	166, 347, 514
Sau96I	GGNCC	4 cut(s)	27, 28, 353, 558
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	468
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	61, 406
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	2 cut(s)	353, 558
SmiMI	CAYNNNNRTG	2 cut(s)	56, 150
Sse9I	AATT	2 cut(s)	392, 455
SspMI	CTAG	2 cut(s)	126, 452
StyD4I	CCNGG	1 cut(s)	466
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	389
TasI	AATT	2 cut(s)	392, 455
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	90, 183
Tru9I	TTAA	2 cut(s)	90, 183
TseFI	GTSAC	3 cut(s)	359, 425, 440
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	3 cut(s)	359, 425, 440
TspDTI	ATGAA	3 cut(s)	40, 168, 345
Van91I	CCANNNNNTGG	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	353, 558
XapI	RAATTY	1 cut(s)	392
XspI	CTAG	2 cut(s)	126, 452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.