Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Reverse (-)

54644671 .. 54646872

Gene Structure 2202 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G030540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGAGTCGTCATCCTGAGGTGAAGTGGGCCCAGAGGGAGGACAAGGTCTTCCTTACTGTGCTTCTGCCCGATGCCAAGGACGCCAAGGTTAAGCTTGAGCCTGAAGGAGTTTTCATCTTCTCCGCCAGTGCCGGTGCCGGGAATAACCACTATGAGCTGAAACTCGACCTTTTCGATAAGGTTGATGTAGAGGAAAGCAAAATAAGTATTGGAGTGAGGAGTATAGTCTGTATTGTTGAGAAGGCAGAGAAAGTTTGGTGGAGTAAGCTGTTGAAAGGAGATGGGAAGACACCGCATTATGTCAAAGTAGATTGGGACAAATGGGTTGACGAAGACGAGGATCCTCCAGCAGCAGGTGCTGATGACATGGGTATGGGAGGCATGGATTTCTCGAAATTTGGTGGCATGGGAGGTGATGATGCAATGGGAGGGATGGGCGGACTTGGTGGGATGGGCGGAATGGGTGGCATGGGTGGAATGGGCGGGATGGATTTCTCGAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGGATTTTTCGAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGGATTTCTCGAAACTTGCTGGCATGGGAGGTGATGGTGCAATGGGTGACTTTGATGATAGTGATGATGATCAAGAAGTTTCCAAGGATGCTGCCAAGAGTGAAGCTGATCCCTCAGGGGAGAAAAAGGAAGCTGCATCAAGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

245

Amino Acids

25.47

Weight (kDa)

4.44

Isoelectric Point (pI)

25.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	5 - 81	3.5e-13	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	5 cut(s)	123, 293, 438, 456, 483
AclWI	GGATC	3 cut(s)	335, 348, 692
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	81
AfiI	CCNNNNNNNGG	3 cut(s)	37, 138, 353
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	5 cut(s)	94, 157, 268, 695, 722
AluI	AGCT	5 cut(s)	94, 157, 268, 695, 722
AlwI	GGATC	3 cut(s)	335, 348, 692
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	27
ApaI	GGGCCC	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	350, 680, 722
ApoI	RAATTY	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	27, 28
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	6 cut(s)	31, 425, 530, 581, 632, 647
AsuII	TTCGAA	1 cut(s)	548
AxyI	CCTNAGG	2 cut(s)	15, 703
BaeGI	GKGCMC	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	3 cut(s)	40, 293, 339
BbvI	GCAGC	3 cut(s)	362, 667, 709
BccI	CCATC	7 cut(s)	275, 427, 445, 481, 532, 583, 617
BclI	TGATCA	1 cut(s)	658
BcnI	CCSGG	1 cut(s)	139
BfuAI	ACCTGC	1 cut(s)	344
BisI	GCNGC	3 cut(s)	351, 681, 723
BlsI	GCNGC	3 cut(s)	352, 682, 724
Bme1390I	CCNGG	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	27, 28
BmiI	GGNNCC	3 cut(s)	29, 136, 342
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	4 cut(s)	61, 409, 667, 734
BpiI	GAAGAC	3 cut(s)	40, 293, 339
BpmI	CTGGAG	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	548
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	657
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	3 cut(s)	75, 84, 672
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 138, 353
Bse118I	RCCGGY	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	126
Bse21I	CCTNAGG	2 cut(s)	15, 703
Bse3DI	GCAATG	2 cut(s)	429, 636
Bse8I	GATNNNNATC	1 cut(s)	657
BseDI	CCNNGG	3 cut(s)	75, 84, 672
BseGI	GGATG	7 cut(s)	10, 438, 456, 492, 543, 594, 682
BseJI	GATNNNNATC	1 cut(s)	657
BseLI	CCNNNNNNNGG	3 cut(s)	37, 138, 353
BseMI	GCAATG	2 cut(s)	429, 636
BseMII	CTCAG	2 cut(s)	6, 717
BseNI	ACTGG	1 cut(s)	126
BseRI	GAGGAG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	362, 667, 709
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	132, 138
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	37, 138, 353
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	548
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	340, 658, 697
BspACI	CCGC	5 cut(s)	123, 293, 438, 456, 483
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	7, 716
BspLI	GGNNCC	3 cut(s)	29, 136, 342
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	3 cut(s)	335, 348, 692
BspT104I	TTCGAA	1 cut(s)	548
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	2 cut(s)	429, 636
BsrFI	RCCGGY	1 cut(s)	131
BsrI	ACTGG	1 cut(s)	126
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	3 cut(s)	75, 84, 672
BssMI	GATC	3 cut(s)	340, 658, 697
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	3 cut(s)	75, 84, 672
Bst4CI	ACNGT	1 cut(s)	58
BstACI	GRCGYC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBI	TTCGAA	1 cut(s)	548
BstC8I	GCNNGC	3 cut(s)	508, 559, 610
BstDEI	CTNAG	2 cut(s)	15, 703
BstF5I	GGATG	7 cut(s)	10, 438, 456, 492, 543, 594, 682
BstKTI	GATC	3 cut(s)	343, 661, 700
BstMBI	GATC	3 cut(s)	340, 658, 697
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 356
BstSCI	CCNGG	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	3 cut(s)	362, 667, 709
BstV2I	GAAGAC	3 cut(s)	40, 293, 339
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu36I	CCTNAGG	2 cut(s)	15, 703
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	7 cut(s)	10, 438, 456, 492, 543, 594, 682
BtsIMutI	CAGTG	1 cut(s)	133
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	3 cut(s)	508, 559, 610
CaiI	CAGNNNCTG	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	27, 28
CseI	GACGC	1 cut(s)	89
CviAII	CATG	8 cut(s)	367, 382, 406, 469, 511, 562, 613, 735
CviJI	RGCY	7 cut(s)	29, 94, 100, 157, 268, 695, 722
CviKI_1	RGCY	7 cut(s)	29, 94, 100, 157, 268, 695, 722
DdeI	CTNAG	2 cut(s)	15, 703
DpnI	GATC	3 cut(s)	342, 660, 699
DpnII	GATC	3 cut(s)	340, 658, 697
EciI	GGCGGA	3 cut(s)	112, 453, 471
Eco130I	CCWWGG	3 cut(s)	75, 84, 672
Eco24I	GRGCYC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	123
Eco81I	CCTNAGG	2 cut(s)	15, 703
EcoT14I	CCWWGG	3 cut(s)	75, 84, 672
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	3 cut(s)	75, 84, 672
FaeI	CATG	8 cut(s)	370, 385, 409, 472, 514, 565, 616, 738
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	8 cut(s)	366, 381, 405, 468, 510, 561, 612, 734
FauI	CCCGC	1 cut(s)	476
FbaI	TGATCA	1 cut(s)	658
Fnu4HI	GCNGC	3 cut(s)	351, 681, 723
FokI	GGATG	6 cut(s)	445, 463, 499, 550, 601, 689
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	351, 681, 723
GluI	GCNGC	3 cut(s)	351, 681, 723
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	132, 138
HgaI	GACGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	8 cut(s)	370, 385, 409, 472, 514, 565, 616, 738
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	2 cut(s)	132, 138
HphI	GGTGA	6 cut(s)	31, 425, 530, 581, 632, 647
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188III	TCNNGA	5 cut(s)	14, 391, 496, 598, 662
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	4 cut(s)	98, 235, 515, 566
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	422, 629, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 356
HpyF3I	CTNAG	2 cut(s)	15, 703
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	8 cut(s)	370, 385, 409, 472, 514, 565, 616, 738
Ksp22I	TGATCA	1 cut(s)	658
Kzo9I	GATC	3 cut(s)	340, 658, 697
Lsp1109I	GCAGC	3 cut(s)	362, 667, 709
LweI	GCATC	4 cut(s)	61, 409, 667, 734
MaeIII	GTNAC	1 cut(s)	635
MalI	GATC	3 cut(s)	342, 660, 699
MboI	GATC	3 cut(s)	340, 658, 697
MboII	GAAGA	4 cut(s)	40, 109, 298, 344
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	13
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	371
MspI	CCGG	2 cut(s)	132, 138
MspR9I	CCNGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	2 cut(s)	80, 356
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	3 cut(s)	340, 658, 697
NlaIII	CATG	8 cut(s)	370, 385, 409, 472, 514, 565, 616, 738
NlaIV	GGNNCC	3 cut(s)	29, 136, 342
NmuCI	GTSAC	1 cut(s)	635
NspV	TTCGAA	1 cut(s)	548
PaqCI	CACCTGC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	3 cut(s)	352, 682, 724
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PspN4I	GGNNCC	3 cut(s)	29, 136, 342
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	27, 28
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	340
PsyI	GACNNNGTC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	3 cut(s)	351, 681, 723
Sau3AI	GATC	3 cut(s)	340, 658, 697
Sau96I	GGNCC	2 cut(s)	27, 28
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	4 cut(s)	61, 409, 667, 734
SfuI	TTCGAA	1 cut(s)	548
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	5 cut(s)	123, 293, 438, 456, 483
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	3 cut(s)	75, 84, 672
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	6 cut(s)	165, 174, 392, 497, 548, 599
TasI	AATT	1 cut(s)	395
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TscAI	CASTG	1 cut(s)	133
TseFI	GTSAC	1 cut(s)	635
TseI	GCWGC	3 cut(s)	350, 680, 722
Tsp45I	GTSAC	1 cut(s)	635
TspDTI	ATGAA	1 cut(s)	103
TspRI	CASTG	1 cut(s)	133
Tth111I	GACNNNGTC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.