Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Forward (+)

13843269 .. 13845079

Gene Structure 1811 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011926

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAGTCGTCATCCTGAGGTGAAGTGGGCCCAGAGGGAGGACAAGGTCTTCCTTACTGTGCTTCTGCCCGATGCCAAGGACGCCAAGGTTAAGCTTGAGCCTGAAGGAGTTTTCATCTTCTCCGCTAGTGCCGGTGCCGGGAATAACCACTATGAGCTGAAACTCGACCTTTTCGATAAGGTTGATGTAGAGGAAAGCAAAATAAGTATTGGAGTGAGGAGTATAGTCTGTATTGTGGAGAAGGCAGAGAAAGTTTGGTGGAGTAAACTATTGAAAGGAGGTGGGAAGACACCGCATTATGTCAAAGTAGATTGGGACAAATGGGTTGACGAAGACGAGGATCCTCCAGCAGCAGGTGCTGATGACATGGGTATGGGAGGCATGGATTTCTCGAAATTTGGTGGCATGGGAGGTGATGATGCAATGGGAGGGATGGGCGGACTTGGTGGCATGGGCGGAATGGGCGGCATGGGCGGGATGGATTTCTCTAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGGATTTCTCGAAACTTGCTGGCATGGGAGGTGATGGTGCAATGGGTGACTTTGATGATAGCGATGATGATCAAGAAGTTTCCAAGACAGGAGAACCGGATGCTGCCAAGAGTGAAGCTGATCCCTCAGGGGAGAAAAAGGAAGCTGCATCAAGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

230

Amino Acids

23.96

Weight (kDa)

4.46

Isoelectric Point (pI)

26.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	5 - 81	3.1e-13	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	6 cut(s)	123, 293, 438, 456, 465, 474
AclWI	GGATC	3 cut(s)	335, 348, 644
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	81
AfiI	CCNNNNNNNGG	3 cut(s)	37, 138, 353
AgsI	TTSAA	1 cut(s)	274
AluBI	AGCT	4 cut(s)	94, 157, 647, 674
AluI	AGCT	4 cut(s)	94, 157, 647, 674
AlwI	GGATC	3 cut(s)	335, 348, 644
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	27
ApaI	GGGCCC	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	350, 632, 674
ApoI	RAATTY	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	27, 28
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	5 cut(s)	31, 425, 521, 572, 587
AxyI	CCTNAGG	2 cut(s)	15, 655
BaeGI	GKGCMC	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	3 cut(s)	40, 293, 339
BbvI	GCAGC	3 cut(s)	362, 619, 661
BccI	CCATC	4 cut(s)	427, 472, 523, 557
BclI	TGATCA	1 cut(s)	598
BcnI	CCSGG	1 cut(s)	139
BfaI	CTAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	344
BisI	GCNGC	4 cut(s)	351, 466, 633, 675
BlsI	GCNGC	4 cut(s)	352, 467, 634, 676
Bme1390I	CCNGG	1 cut(s)	139
BmgT120I	GGNCC	2 cut(s)	27, 28
BmiI	GGNNCC	3 cut(s)	29, 136, 342
BmrFI	CCNGG	1 cut(s)	139
BmsI	GCATC	4 cut(s)	61, 409, 619, 686
BpiI	GAAGAC	3 cut(s)	40, 293, 339
BpmI	CTGGAG	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	597
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	75, 84
BsaWI	WCCGGW	1 cut(s)	625
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 138, 353
Bse118I	RCCGGY	1 cut(s)	131
Bse21I	CCTNAGG	2 cut(s)	15, 655
Bse3DI	GCAATG	2 cut(s)	429, 576
Bse8I	GATNNNNATC	1 cut(s)	597
BseDI	CCNNGG	2 cut(s)	75, 84
BseGI	GGATG	5 cut(s)	10, 438, 483, 534, 634
BseJI	GATNNNNATC	1 cut(s)	597
BseLI	CCNNNNNNNGG	3 cut(s)	37, 138, 353
BseMI	GCAATG	2 cut(s)	429, 576
BseMII	CTCAG	2 cut(s)	6, 669
BseRI	GAGGAG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	362, 619, 661
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	3 cut(s)	132, 138, 626
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	37, 138, 353
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	29
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	340, 598, 649
BspACI	CCGC	6 cut(s)	123, 293, 438, 456, 465, 474
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	7, 668
BspLI	GGNNCC	3 cut(s)	29, 136, 342
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	3 cut(s)	335, 348, 644
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	2 cut(s)	429, 576
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	75, 84
BssMI	GATC	3 cut(s)	340, 598, 649
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	75, 84
Bst4CI	ACNGT	1 cut(s)	58
BstACI	GRCGYC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	499, 550
BstDEI	CTNAG	2 cut(s)	15, 655
BstF5I	GGATG	5 cut(s)	10, 438, 483, 534, 634
BstKTI	GATC	3 cut(s)	343, 601, 652
BstMBI	GATC	3 cut(s)	340, 598, 649
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 356, 462, 471
BstSCI	CCNGG	1 cut(s)	137
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	3 cut(s)	362, 619, 661
BstV2I	GAAGAC	3 cut(s)	40, 293, 339
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu36I	CCTNAGG	2 cut(s)	15, 655
BsuRI	GGCC	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	606
BtsCI	GGATG	5 cut(s)	10, 438, 483, 534, 634
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	2 cut(s)	499, 550
CaiI	CAGNNNCTG	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	27, 28
CseI	GACGC	1 cut(s)	89
CviAII	CATG	8 cut(s)	367, 382, 406, 451, 469, 502, 553, 687
CviJI	RGCY	6 cut(s)	29, 94, 100, 157, 647, 674
CviKI_1	RGCY	6 cut(s)	29, 94, 100, 157, 647, 674
DdeI	CTNAG	2 cut(s)	15, 655
DpnI	GATC	3 cut(s)	342, 600, 651
DpnII	GATC	3 cut(s)	340, 598, 649
EciI	GGCGGA	2 cut(s)	453, 471
Eco130I	CCWWGG	2 cut(s)	75, 84
Eco24I	GRGCYC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	123
Eco81I	CCTNAGG	2 cut(s)	15, 655
EcoT14I	CCWWGG	2 cut(s)	75, 84
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	2 cut(s)	75, 84
FaeI	CATG	8 cut(s)	370, 385, 409, 454, 472, 505, 556, 690
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	8 cut(s)	366, 381, 405, 450, 468, 501, 552, 686
FauI	CCCGC	1 cut(s)	467
FbaI	TGATCA	1 cut(s)	598
Fnu4HI	GCNGC	4 cut(s)	351, 466, 633, 675
FokI	GGATG	4 cut(s)	445, 490, 541, 641
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	4 cut(s)	351, 466, 633, 675
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	4 cut(s)	351, 466, 633, 675
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	3 cut(s)	132, 138, 626
HgaI	GACGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	8 cut(s)	370, 385, 409, 454, 472, 505, 556, 690
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	3 cut(s)	132, 138, 626
HphI	GGTGA	5 cut(s)	31, 425, 521, 572, 587
Hpy166II	GTNNAC	2 cut(s)	266, 328
Hpy188III	TCNNGA	4 cut(s)	14, 391, 538, 602
Hpy8I	GTNNAC	2 cut(s)	266, 328
HpyAV	CCTTC	3 cut(s)	98, 235, 506
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	422, 569, 677
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 356, 462, 471
HpyF3I	CTNAG	2 cut(s)	15, 655
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	8 cut(s)	370, 385, 409, 454, 472, 505, 556, 690
Ksp22I	TGATCA	1 cut(s)	598
Kzo9I	GATC	3 cut(s)	340, 598, 649
Lsp1109I	GCAGC	3 cut(s)	362, 619, 661
LweI	GCATC	4 cut(s)	61, 409, 619, 686
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	575
MalI	GATC	3 cut(s)	342, 600, 651
MboI	GATC	3 cut(s)	340, 598, 649
MboII	GAAGA	4 cut(s)	40, 109, 298, 344
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	13
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	371
MspI	CCGG	3 cut(s)	132, 138, 626
MspR9I	CCNGG	1 cut(s)	139
MwoI	GCNNNNNNNGC	4 cut(s)	80, 356, 462, 471
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	3 cut(s)	340, 598, 649
NlaIII	CATG	8 cut(s)	370, 385, 409, 454, 472, 505, 556, 690
NlaIV	GGNNCC	3 cut(s)	29, 136, 342
NmuCI	GTSAC	1 cut(s)	575
PaqCI	CACCTGC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	4 cut(s)	352, 467, 634, 676
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PspN4I	GGNNCC	3 cut(s)	29, 136, 342
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	27, 28
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	340
PsyI	GACNNNGTC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	4 cut(s)	351, 466, 633, 675
Sau3AI	GATC	3 cut(s)	340, 598, 649
Sau96I	GGNCC	2 cut(s)	27, 28
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	4 cut(s)	61, 409, 619, 686
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	6 cut(s)	123, 293, 438, 456, 465, 474
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	137
StyI	CCWWGG	2 cut(s)	75, 84
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	4 cut(s)	165, 174, 392, 539
TasI	AATT	1 cut(s)	395
TauI	GCSGC	1 cut(s)	468
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	575
TseI	GCWGC	3 cut(s)	350, 632, 674
Tsp45I	GTSAC	1 cut(s)	575
TspDTI	ATGAA	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	395
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.