Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Reverse (-)

36560358 .. 36562738

Gene Structure 2381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1286200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAGTCGTCATCCGGAGGTGAAGTGGGCTCAAAGGGTGGATAAGGTTTTCATTACTGTGCTTTTGCCTGATGCGAAGGACGCCAAGGTTAAGCTTGAACCCGAGGGAGTGTTCAGCTTCTCGGCTAGTGCTGGTGCGGAGAATCACCAGTATGAACTCAAACTGGATCTTTTTGATAAGGTTAATGTGGAGGAAAGCAAAATTAATGTTGGCGTGAGGAGTATCTTTTGTATTGTGGAGAAGGCGGAGCCAGCATGGTGGAATAAGCTATTGAGTGGAGATGGAAAGACGCCGCATTATGTCAAAGTAGATTGGGACAAATGGGTAGATGAGGATGATGACACTGCCGGATCAGGTCTTGGTGACATGGATTTGGGAGGAATGGATTTCTCGAAATTCGGTGGCATGGGAGGTGATGATATGGGAGGAATGGGTGACTTCGATGATAGTGACGAAGACCTAGAACTGTCAAAGCCAGAAGATGAGGCCACCGACAAGGAAGCCGAAGAGCAGGATGCTGGTAAGGACGGAGCTGGTACTTCAGAAGAGAAAAAGGAAGCTACCACGAACGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

192

Amino Acids

20.93

Weight (kDa)

4.31

Isoelectric Point (pI)

27.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	5 - 81	1.6e-12	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	3 cut(s)	137, 245, 293
AclWI	GGATC	2 cut(s)	174, 358
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	525
AcyI	GRCGYC	2 cut(s)	81, 290
AfaI	GTAC	1 cut(s)	538
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	5 cut(s)	94, 117, 268, 533, 560
AluI	AGCT	5 cut(s)	94, 117, 268, 533, 560
AlwI	GGATC	2 cut(s)	174, 358
Ama87I	CYCGRG	1 cut(s)	101
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	1 cut(s)	486
ApoI	RAATTY	1 cut(s)	395
AseI	ATTAAT	1 cut(s)	204
AsuHPI	GGTGA	5 cut(s)	31, 137, 374, 425, 446
AvaI	CYCGRG	1 cut(s)	101
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	462
BccI	CCATC	1 cut(s)	275
BfaI	CTAG	2 cut(s)	126, 461
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
BmeT110I	CYCGRG	1 cut(s)	101
BmiI	GGNNCC	1 cut(s)	249
BmsI	GCATC	2 cut(s)	61, 505
BpiI	GAAGAC	1 cut(s)	462
BsaHI	GRCGYC	2 cut(s)	81, 290
BsaJI	CCNNGG	2 cut(s)	84, 102
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bse1I	ACTGG	2 cut(s)	148, 168
BseAI	TCCGGA	1 cut(s)	13
BseDI	CCNNGG	2 cut(s)	84, 102
BseGI	GGATG	3 cut(s)	10, 340, 520
BseNI	ACTGG	2 cut(s)	148, 168
BseRI	GAGGAG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	488
BsiHKCI	CYCGRG	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	14, 348
BslFI	GGGAC	1 cut(s)	329
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	488
BsoBI	CYCGRG	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp13I	TCCGGA	1 cut(s)	13
Bsp143I	GATC	2 cut(s)	166, 350
BspACI	CCGC	3 cut(s)	137, 245, 293
BspANI	GGCC	1 cut(s)	488
BspEI	TCCGGA	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	249
BspPI	GGATC	2 cut(s)	174, 358
BspQI	GCTCTTC	1 cut(s)	501
BsrI	ACTGG	2 cut(s)	148, 168
BssECI	CCNNGG	2 cut(s)	84, 102
BssMI	GATC	2 cut(s)	166, 350
BssNI	GRCGYC	2 cut(s)	81, 290
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	2 cut(s)	58, 468
Bst6I	CTCTTC	2 cut(s)	501, 540
BstACI	GRCGYC	2 cut(s)	81, 290
BstC8I	GCNNGC	1 cut(s)	252
BstF5I	GGATG	3 cut(s)	10, 340, 520
BstKTI	GATC	2 cut(s)	169, 353
BstMBI	GATC	2 cut(s)	166, 350
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 251
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	1 cut(s)	166
BstXI	CCANNNNNNTGG	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	166
BsuRI	GGCC	1 cut(s)	488
BtsCI	GGATG	3 cut(s)	10, 340, 520
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	252
CseI	GACGC	2 cut(s)	89, 298
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	3 cut(s)	255, 367, 406
CviQI	GTAC	1 cut(s)	537
DpnI	GATC	2 cut(s)	168, 352
DpnII	GATC	2 cut(s)	166, 350
Eam1104I	CTCTTC	2 cut(s)	501, 540
EarI	CTCTTC	2 cut(s)	501, 540
EciI	GGCGGA	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	525
Eco88I	CYCGRG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	3 cut(s)	258, 370, 409
FaiI	YATR	7 cut(s)	153, 256, 300, 368, 407, 422, 574
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	3 cut(s)	254, 366, 405
Fnu4HI	GCNGC	1 cut(s)	293
FokI	GGATG	2 cut(s)	347, 527
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	1 cut(s)	293
FspBI	CTAG	2 cut(s)	126, 461
GluI	GCNGC	1 cut(s)	293
HaeIII	GGCC	1 cut(s)	488
HapII	CCGG	2 cut(s)	14, 348
HgaI	GACGC	2 cut(s)	89, 298
Hin1I	GRCGYC	2 cut(s)	81, 290
Hin1II	CATG	3 cut(s)	258, 370, 409
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	2 cut(s)	4, 142
HpaII	CCGG	2 cut(s)	14, 348
HphI	GGTGA	5 cut(s)	31, 137, 374, 425, 446
Hpy188I	TCNGA	1 cut(s)	544
Hpy188III	TCNNGA	2 cut(s)	14, 391
HpyAV	CCTTC	2 cut(s)	70, 235
HpyCH4III	ACNGT	2 cut(s)	58, 468
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 251
Hsp92I	GRCGYC	2 cut(s)	81, 290
Hsp92II	CATG	3 cut(s)	258, 370, 409
Kpn2I	TCCGGA	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	166, 350
LguI	GCTCTTC	1 cut(s)	501
LmnI	GCTCC	2 cut(s)	247, 530
LweI	GCATC	2 cut(s)	61, 505
MaeI	CTAG	2 cut(s)	126, 461
MaeIII	GTNAC	3 cut(s)	362, 434, 449
MalI	GATC	2 cut(s)	168, 352
MboI	GATC	2 cut(s)	166, 350
MboII	GAAGA	4 cut(s)	467, 491, 518, 557
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	2 cut(s)	201, 395
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	9 cut(s)	10, 97, 184, 210, 325, 371, 404, 419, 478
MroI	TCCGGA	1 cut(s)	13
MseI	TTAA	3 cut(s)	90, 183, 204
MslI	CAYNNNNRTG	2 cut(s)	56, 150
MspI	CCGG	2 cut(s)	14, 348
MwoI	GCNNNNNNNGC	2 cut(s)	80, 251
NdeII	GATC	2 cut(s)	166, 350
NlaIII	CATG	3 cut(s)	258, 370, 409
NlaIV	GGNNCC	1 cut(s)	249
NmeAIII	GCCGAG	1 cut(s)	101
NmuCI	GTSAC	3 cut(s)	362, 434, 449
PciSI	GCTCTTC	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	1 cut(s)	294
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	249
PsuI	RGATCY	1 cut(s)	166
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	2 cut(s)	56, 150
SapI	GCTCTTC	1 cut(s)	501
SaqAI	TTAA	3 cut(s)	90, 183, 204
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	2 cut(s)	166, 350
SchI	GAGTC	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	61, 505
SmiMI	CAYNNNNRTG	2 cut(s)	56, 150
Sse9I	AATT	2 cut(s)	201, 395
SsiI	CCGC	3 cut(s)	137, 245, 293
SspMI	CTAG	2 cut(s)	126, 461
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	58, 468
TaqI	TCGA	2 cut(s)	392, 441
TasI	AATT	2 cut(s)	201, 395
TauI	GCSGC	1 cut(s)	295
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	3 cut(s)	90, 183, 204
Tru9I	TTAA	3 cut(s)	90, 183, 204
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	3 cut(s)	362, 434, 449
Tsp45I	GTSAC	3 cut(s)	362, 434, 449
TspDTI	ATGAA	2 cut(s)	40, 168
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	1 cut(s)	349
VspI	ATTAAT	1 cut(s)	204
XapI	RAATTY	1 cut(s)	395
XspI	CTAG	2 cut(s)	126, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.