Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG365100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGATACTTTGCCCTTGTGGATTTCTTGCTACTGTGTTGTGATCGGTGCTTTAATTTGTTGCAGTCGTCTTCCTGAGGTGAAGTGGGCCCAGAGGGAGGACAAGGTTTTCCTTACTGTGCTTCTGCCCGATGCCAAGGATGCTAAGGTTAAGCTTGAGCCTGAAGGTGCGTTCATCTTCTCTGCTAGTGCCGGTGCAGAGAATCACCAATATGAGCTCAAACTCGACCTTTTCGACAAGGTTAATGTAGAGGAAAGCAAAATAAGTATTGGAGTGAGGAGTATTGTCTGTATTGTGGAGAAGGCAGAGAAAGTTTGGTGGAGTAAGCTACTGAAAGGAAGTGGGAAGACACCGCATTATGTCAAAGTAGATTGGGACAAATGGGTGGACGAAGACGAGGATCCTCCAGCAGCAGGTGCTGATGACATGGGTATGGGAGGCATGGATTTCTCGAAATTTGGTGGCATGGGAGGTGATGATGCAATGGGAGGGATGGGTGGACTGGGTGGTATGGGTGGAATGGGCGGGATGGATTTCTCAAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGGATTTCTCGAAACTTGCTGGCATGGGAGGTGATGGTGCAATGGGTGACTTTGATGATAGTGATGATGATCAAGAAGTTTCCAAGCCAGGAGAACCGGATGCTGCCAAGAGTGAAGCTGATCCCTCGGGGGAGAAAAAGGAAGCTGCATCAAGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

246

Amino Acids

25.95

Weight (kDa)

4.4

Isoelectric Point (pI)

22.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	25 - 101	9.3e-13	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	404
AciI	CCGC	2 cut(s)	353, 525
AclWI	GGATC	3 cut(s)	395, 408, 695
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	183
AfiI	CCNNNNNNNGG	2 cut(s)	97, 413
AjnI	CCWGG	1 cut(s)	667
AluBI	AGCT	5 cut(s)	154, 217, 328, 698, 725
AluI	AGCT	5 cut(s)	154, 217, 328, 698, 725
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	3 cut(s)	395, 408, 695
AlwNI	CAGNNNCTG	1 cut(s)	419
Ama87I	CYCGRG	1 cut(s)	706
AoxI	GGCC	1 cut(s)	87
ApaI	GGGCCC	1 cut(s)	91
ApeKI	GCWGC	3 cut(s)	410, 683, 725
ApoI	RAATTY	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	87, 88
AsuHPI	GGTGA	6 cut(s)	91, 197, 485, 572, 623, 638
AvaI	CYCGRG	1 cut(s)	706
AxyI	CCTNAGG	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	400
BanII	GRGCYC	2 cut(s)	91, 219
BbsI	GAAGAC	3 cut(s)	62, 353, 399
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	422, 670, 712
BccI	CCATC	4 cut(s)	487, 523, 574, 608
BciT130I	CCWGG	1 cut(s)	669
BclI	TGATCA	1 cut(s)	649
BfaI	CTAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	404
BisI	GCNGC	3 cut(s)	411, 684, 726
BlsI	GCNGC	3 cut(s)	412, 685, 727
Bme1390I	CCNGG	1 cut(s)	669
BmeT110I	CYCGRG	1 cut(s)	706
BmgT120I	GGNCC	2 cut(s)	87, 88
BmiI	GGNNCC	2 cut(s)	89, 402
BmrFI	CCNGG	1 cut(s)	669
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	5 cut(s)	121, 130, 469, 670, 737
BmuI	ACTGGG	1 cut(s)	512
BpiI	GAAGAC	3 cut(s)	62, 353, 399
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	648
BsaJI	CCNNGG	2 cut(s)	135, 705
BsaWI	WCCGGW	1 cut(s)	676
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 413
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	507
Bse21I	CCTNAGG	1 cut(s)	75
Bse3DI	GCAATG	2 cut(s)	489, 627
Bse8I	GATNNNNATC	1 cut(s)	648
BseBI	CCWGG	1 cut(s)	669
BseDI	CCNNGG	2 cut(s)	135, 705
BseGI	GGATG	5 cut(s)	145, 498, 534, 585, 685
BseJI	GATNNNNATC	1 cut(s)	648
BseLI	CCNNNNNNNGG	2 cut(s)	97, 413
BseMI	GCAATG	2 cut(s)	489, 627
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	292
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	422, 670, 712
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	219
BsiHKCI	CYCGRG	1 cut(s)	706
BsiSI	CCGG	2 cut(s)	192, 677
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	97, 413
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	89
BsoBI	CYCGRG	1 cut(s)	706
Bsp120I	GGGCCC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	91, 219
Bsp143I	GATC	4 cut(s)	42, 400, 649, 700
BspACI	CCGC	2 cut(s)	353, 525
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	2 cut(s)	89, 402
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	3 cut(s)	395, 408, 695
BsrDI	GCAATG	2 cut(s)	489, 627
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	2 cut(s)	135, 705
BssMI	GATC	4 cut(s)	42, 400, 649, 700
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	669
Bst4CI	ACNGT	2 cut(s)	35, 118
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	550, 601
BstDEI	CTNAG	2 cut(s)	75, 144
BstF5I	GGATG	5 cut(s)	145, 498, 534, 585, 685
BstKTI	GATC	4 cut(s)	45, 403, 652, 703
BstMBI	GATC	4 cut(s)	42, 400, 649, 700
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 416
BstNI	CCWGG	1 cut(s)	669
BstSCI	CCNGG	1 cut(s)	667
BstSLI	GKGCMC	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	422, 670, 712
BstV2I	GAAGAC	3 cut(s)	62, 353, 399
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
Bsu36I	CCTNAGG	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	5 cut(s)	145, 498, 534, 585, 685
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	550, 601
CaiI	CAGNNNCTG	1 cut(s)	419
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	87, 88
CviAII	CATG	6 cut(s)	427, 442, 466, 553, 604, 738
CviJI	RGCY	8 cut(s)	89, 154, 160, 217, 328, 667, 698, 725
CviKI_1	RGCY	8 cut(s)	89, 154, 160, 217, 328, 667, 698, 725
DdeI	CTNAG	2 cut(s)	75, 144
DpnI	GATC	4 cut(s)	44, 402, 651, 702
DpnII	GATC	4 cut(s)	42, 400, 649, 700
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	91, 219
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	183
Eco81I	CCTNAGG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	706
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	667
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	91, 219
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	6 cut(s)	430, 445, 469, 556, 607, 741
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	6 cut(s)	426, 441, 465, 552, 603, 737
FauI	CCCGC	1 cut(s)	518
FbaI	TGATCA	1 cut(s)	649
Fnu4HI	GCNGC	3 cut(s)	411, 684, 726
FokI	GGATG	5 cut(s)	152, 505, 541, 592, 692
FriOI	GRGCYC	2 cut(s)	91, 219
Fsp4HI	GCNGC	3 cut(s)	411, 684, 726
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	3 cut(s)	411, 684, 726
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	192, 677
Hin1II	CATG	6 cut(s)	430, 445, 469, 556, 607, 741
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	2 cut(s)	192, 677
HphI	GGTGA	6 cut(s)	91, 197, 485, 572, 623, 638
Hpy166II	GTNNAC	2 cut(s)	388, 500
Hpy188III	TCNNGA	4 cut(s)	74, 451, 589, 653
Hpy8I	GTNNAC	2 cut(s)	388, 500
HpyAV	CCTTC	3 cut(s)	158, 295, 557
HpyCH4III	ACNGT	2 cut(s)	35, 118
HpyCH4V	TGCA	5 cut(s)	63, 197, 482, 620, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 416
HpyF3I	CTNAG	2 cut(s)	75, 144
Hsp92II	CATG	6 cut(s)	430, 445, 469, 556, 607, 741
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	4 cut(s)	42, 400, 649, 700
Lsp1109I	GCAGC	3 cut(s)	422, 670, 712
LweI	GCATC	5 cut(s)	121, 130, 469, 670, 737
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	626
MalI	GATC	4 cut(s)	44, 402, 651, 702
MboI	GATC	4 cut(s)	42, 400, 649, 700
MboII	GAAGA	4 cut(s)	62, 169, 358, 404
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	2 cut(s)	91, 219
MluCI	AATT	2 cut(s)	54, 455
MseI	TTAA	3 cut(s)	53, 150, 243
MslI	CAYNNNNRTG	2 cut(s)	210, 431
MspI	CCGG	2 cut(s)	192, 677
MspR9I	CCNGG	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	669
MwoI	GCNNNNNNNGC	2 cut(s)	140, 416
NdeII	GATC	4 cut(s)	42, 400, 649, 700
NlaIII	CATG	6 cut(s)	430, 445, 469, 556, 607, 741
NlaIV	GGNNCC	2 cut(s)	89, 402
NmuCI	GTSAC	1 cut(s)	626
PaqCI	CACCTGC	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	3 cut(s)	412, 685, 727
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	667
PspGI	CCWGG	1 cut(s)	667
PspN4I	GGNNCC	2 cut(s)	89, 402
PspOMI	GGGCCC	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	87, 88
PstNI	CAGNNNCTG	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	400
RseI	CAYNNNNRTG	2 cut(s)	210, 431
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	53, 150, 243
SatI	GCNGC	3 cut(s)	411, 684, 726
Sau3AI	GATC	4 cut(s)	42, 400, 649, 700
Sau96I	GGNCC	2 cut(s)	87, 88
ScrFI	CCNGG	1 cut(s)	669
SduI	GDGCHC	2 cut(s)	91, 219
SfaNI	GCATC	5 cut(s)	121, 130, 469, 670, 737
SmiMI	CAYNNNNRTG	2 cut(s)	210, 431
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	2 cut(s)	54, 455
SsiI	CCGC	2 cut(s)	353, 525
SspMI	CTAG	1 cut(s)	186
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	667
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	35, 118
TaqI	TCGA	4 cut(s)	225, 234, 452, 590
TasI	AATT	2 cut(s)	54, 455
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	3 cut(s)	53, 150, 243
Tru9I	TTAA	3 cut(s)	53, 150, 243
TseFI	GTSAC	1 cut(s)	626
TseI	GCWGC	3 cut(s)	410, 683, 725
Tsp45I	GTSAC	1 cut(s)	626
TspDTI	ATGAA	1 cut(s)	163
XapI	RAATTY	1 cut(s)	455
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.