Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Forward (+)

40052817 .. 40054510

Gene Structure 1694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0286200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGGGGATTTGTACGCTTTGGATTTCGATGGAGTTCTGTGCGATAGCTGCGGAGAGAGCTACGCCTCTGCTGCCAAGGCTGCTAAAGTGAGATGGCCAAACCTATTCAGTGATGTGGATTCAAGTTTGAAGGATTGGATGGTTGAACAGATCGGCATCGTGAGACCTGTGCTGCAATCTCGGCATGAGAATCTGATACTTGTGAGGCTACTTCTGGAGATGAGGGTTCCTTCTATAAGGGAGTCATCAGTTGCGGAAGGGCTCACAGTGGAGGGGATAGTGGAGAATTGGTCAGAGTTGAAGAGTCTGGTTCTGAAGGAATGGGGTGAGGATAAGGATGCTCTTATAAATGTGTTTGGAAAGGTCAGGGATGAGTGGAAGGACCAGGACCTGGAAACTTGGACTGGTGCAAATAGATTGTATCCAGGTGTTGCTGATGCTCTTACATCGGCAACCTCAACCATTTACATTGTCACTGGGAAACAGAGCCGATTTGCCGAGGTAATACTGGAAAAACTTGCAGAAGTTACACTACCACTTGGAAGAATATTTGGAGATGGATCTCGTTCCAGCCGCAAGATAGAAGTACTGAAGCAGCTTCAAGAGAAACCAGAACATCAAGGGCTGAAGCTGCACTTTGTGGAGGATAGACTAGCAACCCTGAAGAAAGTTATTGAAGTACCCGAATTGGATGGTTGGAATTTGTATCTGGGCGGTTGGGGGTACAATACACAGAAAGAGAGAGACGAAGCTGCTAAAATTCCCAGGATTCAGATTCTTCAGCTTTCGGACTTCAGTAACAAGCTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

270

Amino Acids

30.46

Weight (kDa)

5.24

Isoelectric Point (pI)

37.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	347
AccB7I	CCANNNNNTGG	1 cut(s)	391
AciI	CCGC	4 cut(s)	51, 254, 574, 714
AclWI	GGATC	1 cut(s)	568
AcoI	YGGCCR	1 cut(s)	95
AcsI	RAATTY	2 cut(s)	700, 759
AcuI	CTGAAG	6 cut(s)	335, 611, 647, 683, 764, 778
AdeI	CACNNNGTG	1 cut(s)	640
AfaI	GTAC	4 cut(s)	14, 588, 681, 725
AfiI	CCNNNNNNNGG	1 cut(s)	391
AgsI	TTSAA	6 cut(s)	123, 130, 146, 301, 602, 677
AjnI	CCWGG	4 cut(s)	384, 390, 424, 764
AluBI	AGCT	7 cut(s)	48, 60, 598, 631, 752, 784, 805
AluI	AGCT	7 cut(s)	48, 60, 598, 631, 752, 784, 805
Alw26I	GTCTC	2 cut(s)	157, 738
AlwI	GGATC	1 cut(s)	568
AlwNI	CAGNNNCTG	1 cut(s)	391
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	7 cut(s)	48, 71, 80, 172, 595, 631, 752
ApoI	RAATTY	2 cut(s)	700, 759
AspS9I	GGNCC	2 cut(s)	382, 388
AsuHPI	GGTGA	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	382, 388
BalI	TGGCCA	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	264
BarI	GAAGNNNNNNTAC	2 cut(s)	516, 548
BbvI	GCAGC	7 cut(s)	35, 58, 67, 159, 607, 618, 739
BccI	CCATC	5 cut(s)	23, 87, 133, 551, 686
BciT130I	CCWGG	4 cut(s)	386, 392, 426, 766
BciVI	GTATCC	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	157, 738
BfaI	CTAG	1 cut(s)	653
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	8 cut(s)	49, 72, 81, 173, 574, 596, 632, 753
BlsI	GCNGC	8 cut(s)	50, 73, 82, 174, 575, 597, 633, 754
BmcAI	AGTACT	1 cut(s)	588
Bme1390I	CCNGG	4 cut(s)	386, 392, 426, 766
Bme18I	GGWCC	2 cut(s)	382, 388
BmgT120I	GGNCC	2 cut(s)	382, 388
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	4 cut(s)	386, 392, 426, 766
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	3 cut(s)	165, 328, 427
BmuI	ACTGGG	1 cut(s)	486
BpmI	CTGGAG	1 cut(s)	236
BsaBI	GATNNNNATC	1 cut(s)	155
BsaI	GGTCTC	1 cut(s)	157
BsaJI	CCNNGG	3 cut(s)	75, 498, 764
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
Bse1I	ACTGG	3 cut(s)	409, 481, 513
Bse8I	GATNNNNATC	1 cut(s)	155
BseBI	CCWGG	4 cut(s)	386, 392, 426, 766
BseDI	CCNNGG	3 cut(s)	75, 498, 764
BseGI	GGATG	4 cut(s)	144, 343, 376, 697
BseJI	GATNNNNATC	1 cut(s)	155
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseNI	ACTGG	3 cut(s)	409, 481, 513
BseXI	GCAGC	7 cut(s)	35, 58, 67, 159, 607, 618, 739
BsgI	GTGCAG	1 cut(s)	617
BshFI	GGCC	1 cut(s)	97
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	2 cut(s)	157, 738
BsmBI	CGTCTC	1 cut(s)	738
BsnI	GGCC	1 cut(s)	97
Bso31I	GGTCTC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp143I	GATC	2 cut(s)	150, 560
BspACI	CCGC	4 cut(s)	51, 254, 574, 714
BspANI	GGCC	1 cut(s)	97
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	568
BspTNI	GGTCTC	1 cut(s)	157
BsrI	ACTGG	3 cut(s)	409, 481, 513
BssECI	CCNNGG	3 cut(s)	75, 498, 764
BssMI	GATC	2 cut(s)	150, 560
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	4 cut(s)	386, 392, 426, 766
Bst4CI	ACNGT	1 cut(s)	268
Bst6I	CTCTTC	1 cut(s)	296
BstF5I	GGATG	4 cut(s)	144, 343, 376, 697
BstKTI	GATC	2 cut(s)	153, 563
BstMAI	GTCTC	2 cut(s)	157, 738
BstMBI	GATC	2 cut(s)	150, 560
BstMWI	GCNNNNNNNGC	7 cut(s)	48, 57, 71, 77, 80, 181, 631
BstNI	CCWGG	4 cut(s)	386, 392, 426, 766
BstSCI	CCNGG	4 cut(s)	384, 390, 424, 764
BstV1I	GCAGC	7 cut(s)	35, 58, 67, 159, 607, 618, 739
BstX2I	RGATCY	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	560
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	4 cut(s)	144, 343, 376, 697
BtsIMutI	CAGTG	3 cut(s)	115, 273, 474
CaiI	CAGNNNCTG	1 cut(s)	391
Cfr13I	GGNCC	2 cut(s)	382, 388
Csp6I	GTAC	4 cut(s)	13, 587, 680, 724
CviAII	CATG	1 cut(s)	185
CviQI	GTAC	4 cut(s)	13, 587, 680, 724
DpnI	GATC	2 cut(s)	152, 562
DpnII	GATC	2 cut(s)	150, 560
DraIII	CACNNNGTG	1 cut(s)	640
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	296
EarI	CTCTTC	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	264
Eco31I	GGTCTC	1 cut(s)	157
Eco47I	GGWCC	2 cut(s)	382, 388
Eco57I	CTGAAG	6 cut(s)	335, 611, 647, 683, 764, 778
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	4 cut(s)	384, 390, 424, 764
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	738
FaeI	CATG	1 cut(s)	188
FaiI	YATR	3 cut(s)	186, 236, 347
FalI	AAGNNNNNCTT	2 cut(s)	620, 652
FatI	CATG	1 cut(s)	184
Fnu4HI	GCNGC	8 cut(s)	49, 72, 81, 173, 574, 596, 632, 753
FokI	GGATG	4 cut(s)	151, 350, 383, 704
FriOI	GRGCYC	1 cut(s)	264
Fsp4HI	GCNGC	8 cut(s)	49, 72, 81, 173, 574, 596, 632, 753
FspBI	CTAG	1 cut(s)	653
GluI	GCNGC	8 cut(s)	49, 72, 81, 173, 574, 596, 632, 753
GsuI	CTGGAG	1 cut(s)	236
HaeIII	GGCC	1 cut(s)	97
Hin1II	CATG	1 cut(s)	188
HinfI	GANTC	6 cut(s)	119, 190, 242, 304, 769, 775
HphI	GGTGA	1 cut(s)	338
Hpy188I	TCNGA	5 cut(s)	195, 295, 315, 774, 790
Hpy188III	TCNNGA	3 cut(s)	160, 215, 602
HpyAV	CCTTC	5 cut(s)	124, 240, 251, 310, 373
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4V	TGCA	4 cut(s)	175, 410, 521, 634
HpyF10VI	GCNNNNNNNGC	7 cut(s)	48, 57, 71, 77, 80, 181, 631
Hsp92II	CATG	1 cut(s)	188
Kzo9I	GATC	2 cut(s)	150, 560
Lsp1109I	GCAGC	7 cut(s)	35, 58, 67, 159, 607, 618, 739
LweI	GCATC	3 cut(s)	165, 328, 427
MaeI	CTAG	1 cut(s)	653
MaeIII	GTNAC	3 cut(s)	472, 526, 797
MalI	GATC	2 cut(s)	152, 562
MboI	GATC	2 cut(s)	150, 560
MboII	GAAGA	4 cut(s)	313, 555, 676, 770
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	1 cut(s)	264
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	4 cut(s)	286, 686, 700, 759
MluNI	TGGCCA	1 cut(s)	97
MlyI	GAGTC	2 cut(s)	251, 313
MmeI	TCCRAC	1 cut(s)	677
MnlI	CCTC	8 cut(s)	76, 198, 216, 265, 322, 466, 493, 637
Mox20I	TGGCCA	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	97
Msp20I	TGGCCA	1 cut(s)	97
MspR9I	CCNGG	4 cut(s)	386, 392, 426, 766
MvaI	CCWGG	4 cut(s)	386, 392, 426, 766
MwoI	GCNNNNNNNGC	7 cut(s)	48, 57, 71, 77, 80, 181, 631
NdeII	GATC	2 cut(s)	150, 560
NlaIII	CATG	1 cut(s)	188
NlaIV	GGNNCC	1 cut(s)	228
NmeAIII	GCCGAG	2 cut(s)	160, 523
NmuCI	GTSAC	1 cut(s)	472
PfeI	GAWTC	4 cut(s)	119, 190, 769, 775
PflMI	CCANNNNNTGG	1 cut(s)	391
PkrI	GCNGC	8 cut(s)	50, 73, 82, 174, 575, 597, 633, 754
PleI	GAGTC	2 cut(s)	250, 312
PpsI	GAGTC	2 cut(s)	250, 312
PpuMI	RGGWCCY	1 cut(s)	388
PsiI	TTATAA	1 cut(s)	347
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	4 cut(s)	384, 390, 424, 764
PspGI	CCWGG	4 cut(s)	384, 390, 424, 764
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	382, 388
PspPPI	RGGWCCY	1 cut(s)	388
PstNI	CAGNNNCTG	1 cut(s)	391
PsuI	RGATCY	1 cut(s)	560
RsaI	GTAC	4 cut(s)	14, 588, 681, 725
RsaNI	GTAC	4 cut(s)	13, 587, 680, 724
SatI	GCNGC	8 cut(s)	49, 72, 81, 173, 574, 596, 632, 753
Sau3AI	GATC	2 cut(s)	150, 560
Sau96I	GGNCC	2 cut(s)	382, 388
ScaI	AGTACT	1 cut(s)	588
SchI	GAGTC	2 cut(s)	251, 313
ScrFI	CCNGG	4 cut(s)	386, 392, 426, 766
SduI	GDGCHC	1 cut(s)	264
SfaNI	GCATC	3 cut(s)	165, 328, 427
SinI	GGWCC	2 cut(s)	382, 388
Sse9I	AATT	4 cut(s)	286, 686, 700, 759
SsiI	CCGC	4 cut(s)	51, 254, 574, 714
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	1 cut(s)	653
StyD4I	CCNGG	4 cut(s)	384, 390, 424, 764
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	268
TaqI	TCGA	1 cut(s)	27
TasI	AATT	4 cut(s)	286, 686, 700, 759
TatI	WGTACW	1 cut(s)	586
TauI	GCSGC	1 cut(s)	576
TfiI	GAWTC	4 cut(s)	119, 190, 769, 775
TscAI	CASTG	3 cut(s)	115, 273, 481
TseFI	GTSAC	1 cut(s)	472
TseI	GCWGC	7 cut(s)	48, 71, 80, 172, 595, 631, 752
Tsp45I	GTSAC	1 cut(s)	472
TspRI	CASTG	3 cut(s)	115, 273, 481
Van91I	CCANNNNNTGG	1 cut(s)	391
VpaK11BI	GGWCC	2 cut(s)	382, 388
XapI	RAATTY	2 cut(s)	700, 759
XspI	CTAG	1 cut(s)	653
ZrmI	AGTACT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.