Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Forward (+)

13779969 .. 13786042

Gene Structure 6074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00173920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGAGTCGTCATCCTGAGGTGAAGTGGGCCCAGAGGGAGGACAAGGTTTTCCTTACTGTGCTTCTGCCCGATGCCAAGGACGCTAAGGTTAAGCTTGAGCCTGAAGGTGTTTTCATCTTCTCTGCTAGTGCCGGTGCAGAGAATCACCAATATGAGCTCAAACTCGACCTTTTCGACAAGGTTAATGTAGAGGAAAGCAAAATAAGTATTGGAGTGAGGAGTATTGTCTGTATTGTGGAGAAGGCAGAGAAAGTTTGGTGGAGTAAGCTACTGAAAGGAAGTGGGAAGACACCGCATTATGTCAAAGTAGATTGGGACAAATGGGTGGACGAAGACGAGGATCCTCCAGCTGCAGGTGCTGATGACATGGGTATGGGAGGCATGGATTTCTCGAAATTTGGTGGCATGGGAGGTGATGATGCAATGGGAGGGATGGGCGGAATGGGCGGCATGGGTGGAATGGGCGGCATGGATTTCTCTAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGGATTTTTCGAAACTTGCTGGCATGGGAGGTGAAGGTGGAATGGGTGGGATGGATTTCTCGAAACTTGCTGGCATGGGAGGTGATGGTGCAATGGGTGACTTTGATGATAGCGATGATGATCAAGAAGTTTCCAAGCCAGGAGAACCGGATGCTGCCAAGAGTGAAGCTGATCCCTCAGGGGAGAAAAAGGAAGCTGCATCAAGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

243

Amino Acids

25.43

Weight (kDa)

4.46

Isoelectric Point (pI)

23.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	5 - 81	9.3e-13	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	344
AciI	CCGC	4 cut(s)	293, 438, 447, 465
AclWI	GGATC	3 cut(s)	335, 348, 686
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	123
AfiI	CCNNNNNNNGG	2 cut(s)	37, 353
AjnI	CCWGG	1 cut(s)	658
AluBI	AGCT	6 cut(s)	94, 157, 268, 350, 689, 716
AluI	AGCT	6 cut(s)	94, 157, 268, 350, 689, 716
Alw21I	GWGCWC	1 cut(s)	159
AlwI	GGATC	3 cut(s)	335, 348, 686
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	27
ApaI	GGGCCC	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	350, 674, 716
ApoI	RAATTY	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	27, 28
AsuHPI	GGTGA	7 cut(s)	31, 137, 425, 512, 563, 614, 629
AsuII	TTCGAA	1 cut(s)	530
AxyI	CCTNAGG	2 cut(s)	15, 697
BaeGI	GKGCMC	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	340
BanII	GRGCYC	2 cut(s)	31, 159
BbsI	GAAGAC	2 cut(s)	293, 339
Bbv12I	GWGCWC	1 cut(s)	159
BbvI	GCAGC	3 cut(s)	337, 661, 703
BccI	CCATC	4 cut(s)	427, 514, 565, 599
BciT130I	CCWGG	1 cut(s)	660
BclI	TGATCA	1 cut(s)	640
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	344
BisI	GCNGC	5 cut(s)	351, 448, 466, 675, 717
BlsI	GCNGC	5 cut(s)	352, 449, 467, 676, 718
Bme1390I	CCNGG	1 cut(s)	660
BmgT120I	GGNCC	2 cut(s)	27, 28
BmiI	GGNNCC	2 cut(s)	29, 342
BmrFI	CCNGG	1 cut(s)	660
BmsI	GCATC	4 cut(s)	61, 409, 661, 728
BpiI	GAAGAC	2 cut(s)	293, 339
BpmI	CTGGAG	1 cut(s)	330
Bpu10I	CCTNAGC	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	530
BpuEI	CTTGAG	1 cut(s)	116
BsaBI	GATNNNNATC	1 cut(s)	639
BsaJI	CCNNGG	1 cut(s)	75
BsaWI	WCCGGW	1 cut(s)	667
Bsc4I	CCNNNNNNNGG	2 cut(s)	37, 353
Bse118I	RCCGGY	1 cut(s)	131
Bse21I	CCTNAGG	2 cut(s)	15, 697
Bse3DI	GCAATG	2 cut(s)	429, 618
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	5 cut(s)	10, 438, 525, 576, 676
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	2 cut(s)	37, 353
BseMI	GCAATG	2 cut(s)	429, 618
BseMII	CTCAG	2 cut(s)	6, 711
BseRI	GAGGAG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	337, 661, 703
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	159
BsiSI	CCGG	2 cut(s)	132, 668
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	2 cut(s)	37, 353
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	530
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	31, 159
Bsp143I	GATC	3 cut(s)	340, 640, 691
BspACI	CCGC	4 cut(s)	293, 438, 447, 465
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	7, 710
BspLI	GGNNCC	2 cut(s)	29, 342
BspMAI	CTGCAG	1 cut(s)	355
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	3 cut(s)	335, 348, 686
BspT104I	TTCGAA	1 cut(s)	530
BsrDI	GCAATG	2 cut(s)	429, 618
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	3 cut(s)	340, 640, 691
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	1 cut(s)	58
BstBI	TTCGAA	1 cut(s)	530
BstC8I	GCNNGC	3 cut(s)	490, 541, 592
BstDEI	CTNAG	3 cut(s)	15, 84, 697
BstF5I	GGATG	5 cut(s)	10, 438, 525, 576, 676
BstKTI	GATC	3 cut(s)	343, 643, 694
BstMBI	GATC	3 cut(s)	340, 640, 691
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 356, 444
BstNI	CCWGG	1 cut(s)	660
BstSCI	CCNGG	1 cut(s)	658
BstSFI	CTRYAG	1 cut(s)	351
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	3 cut(s)	337, 661, 703
BstV2I	GAAGAC	2 cut(s)	293, 339
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu36I	CCTNAGG	2 cut(s)	15, 697
BsuRI	GGCC	1 cut(s)	29
BtgZI	GCGATG	1 cut(s)	648
BtsCI	GGATG	5 cut(s)	10, 438, 525, 576, 676
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	3 cut(s)	490, 541, 592
CaiI	CAGNNNCTG	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	27, 28
CseI	GACGC	1 cut(s)	89
CviAII	CATG	9 cut(s)	367, 382, 406, 451, 469, 493, 544, 595, 729
CviJI	RGCY	9 cut(s)	29, 94, 100, 157, 268, 350, 658, 689, 716
CviKI_1	RGCY	9 cut(s)	29, 94, 100, 157, 268, 350, 658, 689, 716
DdeI	CTNAG	3 cut(s)	15, 84, 697
DpnI	GATC	3 cut(s)	342, 642, 693
DpnII	GATC	3 cut(s)	340, 640, 691
EciI	GGCGGA	1 cut(s)	453
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	2 cut(s)	31, 159
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	123
Eco81I	CCTNAGG	2 cut(s)	15, 697
EcoICRI	GAGCTC	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	658
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	31, 159
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	9 cut(s)	370, 385, 409, 454, 472, 496, 547, 598, 732
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	9 cut(s)	366, 381, 405, 450, 468, 492, 543, 594, 728
FbaI	TGATCA	1 cut(s)	640
Fnu4HI	GCNGC	5 cut(s)	351, 448, 466, 675, 717
FokI	GGATG	4 cut(s)	445, 532, 583, 683
FriOI	GRGCYC	2 cut(s)	31, 159
Fsp4HI	GCNGC	5 cut(s)	351, 448, 466, 675, 717
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	5 cut(s)	351, 448, 466, 675, 717
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	2 cut(s)	132, 668
HgaI	GACGC	1 cut(s)	89
Hin1II	CATG	9 cut(s)	370, 385, 409, 454, 472, 496, 547, 598, 732
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	2 cut(s)	4, 142
HpaII	CCGG	2 cut(s)	132, 668
HphI	GGTGA	7 cut(s)	31, 137, 425, 512, 563, 614, 629
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188III	TCNNGA	4 cut(s)	14, 391, 580, 644
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	4 cut(s)	98, 235, 497, 548
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	5 cut(s)	137, 353, 422, 611, 719
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 356, 444
HpyF3I	CTNAG	3 cut(s)	15, 84, 697
Hsp92II	CATG	9 cut(s)	370, 385, 409, 454, 472, 496, 547, 598, 732
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	3 cut(s)	340, 640, 691
Lsp1109I	GCAGC	3 cut(s)	337, 661, 703
LweI	GCATC	4 cut(s)	61, 409, 661, 728
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	3 cut(s)	342, 642, 693
MboI	GATC	3 cut(s)	340, 640, 691
MboII	GAAGA	3 cut(s)	109, 298, 344
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	2 cut(s)	31, 159
MluCI	AATT	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	13
MseI	TTAA	2 cut(s)	90, 183
MslI	CAYNNNNRTG	2 cut(s)	150, 371
MspA1I	CMGCKG	1 cut(s)	350
MspI	CCGG	2 cut(s)	132, 668
MspR9I	CCNGG	1 cut(s)	660
MvaI	CCWGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	3 cut(s)	80, 356, 444
NdeII	GATC	3 cut(s)	340, 640, 691
NlaIII	CATG	9 cut(s)	370, 385, 409, 454, 472, 496, 547, 598, 732
NlaIV	GGNNCC	2 cut(s)	29, 342
NmuCI	GTSAC	1 cut(s)	617
NspV	TTCGAA	1 cut(s)	530
PaqCI	CACCTGC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	5 cut(s)	352, 449, 467, 676, 718
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp124BI	GAGCTC	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	2 cut(s)	29, 342
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	27, 28
PstI	CTGCAG	1 cut(s)	355
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	350
RseI	CAYNNNNRTG	2 cut(s)	150, 371
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	90, 183
SatI	GCNGC	5 cut(s)	351, 448, 466, 675, 717
Sau3AI	GATC	3 cut(s)	340, 640, 691
Sau96I	GGNCC	2 cut(s)	27, 28
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	660
SduI	GDGCHC	2 cut(s)	31, 159
SfaNI	GCATC	4 cut(s)	61, 409, 661, 728
SfcI	CTRYAG	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	530
SmiMI	CAYNNNNRTG	2 cut(s)	150, 371
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	4 cut(s)	293, 438, 447, 465
SspMI	CTAG	1 cut(s)	126
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	658
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	5 cut(s)	165, 174, 392, 530, 581
TasI	AATT	1 cut(s)	395
TauI	GCSGC	2 cut(s)	450, 468
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	90, 183
Tru9I	TTAA	2 cut(s)	90, 183
TseFI	GTSAC	1 cut(s)	617
TseI	GCWGC	3 cut(s)	350, 674, 716
Tsp45I	GTSAC	1 cut(s)	617
TspDTI	ATGAA	1 cut(s)	103
XapI	RAATTY	1 cut(s)	395
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.