Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Forward (+)

44203137 .. 44203652

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0351600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGAGATCGATTTGTGTTTCAGTTTGATAGGGAGGCTGAGCGTAACAAAATCTTGCATGGAGGGCCTTGGTTTTACATAAATACAATGCTCATGCTGGGTGGGTACGATGGGATAAGCCCAGTGGCTGATGTCTCCCTGAATCTAGTGGAAACTTGGGTTGCTATCATGGGCCTTCCGGTAGGGCTACGAAACAAGGCGGCTCTGAACTTGGTGGGATCGACCCTGGGTAGGGTGATCCGATTTGACCAGTCTGCGCTGCATAGGAGAGAGCAAAAACAGAGGATTCATTTGGTGCTTGATGTCCGGCGAAGGCTTAGGGTTTGGAAACTCTTTGAATTTTCACCGGCAGTAGCGCAGGAGCTGTCTTTCACCTATGAAAAAGTTAGAGGCTTCTGTCCTAGCTGTGGCTTTTTTGAGCATGGAGAGACAGGCTGCGACGGTTTGTTGACTAAAGAGAAGGATGAAATCTTGGCTCAATTGCAAGCCTCTGCTTTGGCTGGACTTTCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

171

Amino Acids

19.29

Weight (kDa)

8.51

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-CCHC_4	PF14392	100 - 147	7e-09	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	2 cut(s)	226, 232
AcsI	RAATTY	1 cut(s)	338
AfaI	GTAC	1 cut(s)	107
AfiI	CCNNNNNNNGG	3 cut(s)	231, 232, 407
AgsI	TTSAA	1 cut(s)	338
AjnI	CCWGG	1 cut(s)	225
AluBI	AGCT	2 cut(s)	364, 405
AluI	AGCT	2 cut(s)	364, 405
Alw26I	GTCTC	2 cut(s)	139, 422
AlwI	GGATC	2 cut(s)	226, 232
AlwNI	CAGNNNCTG	2 cut(s)	128, 364
AoxI	GGCC	2 cut(s)	65, 172
ApeKI	GCWGC	2 cut(s)	259, 435
ApoI	RAATTY	1 cut(s)	338
AspLEI	GCGC	2 cut(s)	259, 358
AspS9I	GGNCC	2 cut(s)	65, 172
AsuHPI	GGTGA	3 cut(s)	247, 336, 364
BbvI	GCAGC	2 cut(s)	246, 422
BccI	CCATC	1 cut(s)	104
BciT130I	CCWGG	1 cut(s)	227
BcoDI	GTCTC	2 cut(s)	139, 422
BfaI	CTAG	2 cut(s)	146, 402
BisI	GCNGC	3 cut(s)	201, 260, 436
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	3 cut(s)	202, 261, 437
Bme1390I	CCNGG	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	65, 172
BmrFI	CCNGG	1 cut(s)	227
BmrI	ACTGGG	1 cut(s)	116
BmuI	ACTGGG	1 cut(s)	116
Bpu10I	CCTNAGC	1 cut(s)	317
Bpu1102I	GCTNAGC	1 cut(s)	39
Bsa29I	ATCGAT	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	68, 225, 226
BsaWI	WCCGGW	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	3 cut(s)	231, 232, 407
Bse118I	RCCGGY	1 cut(s)	346
Bse1I	ACTGG	2 cut(s)	122, 250
BseBI	CCWGG	1 cut(s)	227
BseCI	ATCGAT	1 cut(s)	10
BseDI	CCNNGG	3 cut(s)	68, 225, 226
BseGI	GGATG	1 cut(s)	469
BseLI	CCNNNNNNNGG	3 cut(s)	231, 232, 407
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	2 cut(s)	122, 250
BseXI	GCAGC	2 cut(s)	246, 422
BseYI	CCCAGC	1 cut(s)	97
BshFI	GGCC	2 cut(s)	67, 174
BshVI	ATCGAT	1 cut(s)	10
BsiSI	CCGG	3 cut(s)	179, 307, 347
BslI	CCNNNNNNNGG	3 cut(s)	231, 232, 407
BsmAI	GTCTC	2 cut(s)	139, 422
BsnI	GGCC	2 cut(s)	67, 174
Bsp143I	GATC	3 cut(s)	7, 218, 237
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	2 cut(s)	67, 174
BspCNI	CTCAG	1 cut(s)	31
BspDI	ATCGAT	1 cut(s)	10
BspPI	GGATC	2 cut(s)	226, 232
BsrFI	RCCGGY	1 cut(s)	346
BsrI	ACTGG	2 cut(s)	122, 250
BssAI	RCCGGY	1 cut(s)	346
BssECI	CCNNGG	3 cut(s)	68, 225, 226
BssMI	GATC	3 cut(s)	7, 218, 237
BssT1I	CCWWGG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	227
Bst4CI	ACNGT	1 cut(s)	443
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	2 cut(s)	39, 317
BstF5I	GGATG	1 cut(s)	469
BstHHI	GCGC	2 cut(s)	259, 358
BstKTI	GATC	3 cut(s)	10, 221, 240
BstMAI	GTCTC	2 cut(s)	139, 422
BstMBI	GATC	3 cut(s)	7, 218, 237
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNI	CCWGG	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	246, 422
Bsu15I	ATCGAT	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	67, 174
BsuTUI	ATCGAT	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	486
CaiI	CAGNNNCTG	2 cut(s)	128, 364
CfoI	GCGC	2 cut(s)	259, 358
Cfr10I	RCCGGY	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	65, 172
ClaI	ATCGAT	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	106
CviAII	CATG	4 cut(s)	59, 94, 169, 422
CviQI	GTAC	1 cut(s)	106
DdeI	CTNAG	2 cut(s)	39, 317
DpnI	GATC	3 cut(s)	9, 220, 239
DpnII	GATC	3 cut(s)	7, 218, 237
Eco130I	CCWWGG	1 cut(s)	68
EcoO109I	RGGNCCY	1 cut(s)	65
EcoRII	CCWGG	1 cut(s)	225
EcoT14I	CCWWGG	1 cut(s)	68
ErhI	CCWWGG	1 cut(s)	68
FaeI	CATG	4 cut(s)	62, 97, 172, 425
FaiI	YATR	8 cut(s)	60, 80, 95, 170, 264, 378, 423, 514
FatI	CATG	4 cut(s)	58, 93, 168, 421
Fnu4HI	GCNGC	3 cut(s)	201, 260, 436
FokI	GGATG	1 cut(s)	476
Fsp4HI	GCNGC	3 cut(s)	201, 260, 436
FspBI	CTAG	2 cut(s)	146, 402
GlaI	GCGC	2 cut(s)	258, 357
GluI	GCNGC	3 cut(s)	201, 260, 436
GsaI	CCCAGC	1 cut(s)	101
HaeIII	GGCC	2 cut(s)	67, 174
HapII	CCGG	3 cut(s)	179, 307, 347
HhaI	GCGC	2 cut(s)	259, 358
Hin1II	CATG	4 cut(s)	62, 97, 172, 425
Hin6I	GCGC	2 cut(s)	257, 356
HinP1I	GCGC	2 cut(s)	257, 356
HincII	GTYRAC	1 cut(s)	450
HindII	GTYRAC	1 cut(s)	450
HinfI	GANTC	2 cut(s)	142, 286
HpaII	CCGG	3 cut(s)	179, 307, 347
HphI	GGTGA	3 cut(s)	247, 336, 364
Hpy166II	GTNNAC	1 cut(s)	450
Hpy188I	TCNGA	2 cut(s)	207, 242
Hpy8I	GTNNAC	1 cut(s)	450
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	3 cut(s)	185, 306, 454
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4V	TGCA	3 cut(s)	58, 262, 484
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	2 cut(s)	39, 317
Hsp92II	CATG	4 cut(s)	62, 97, 172, 425
HspAI	GCGC	2 cut(s)	257, 356
Kzo9I	GATC	3 cut(s)	7, 218, 237
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	2 cut(s)	246, 422
MaeI	CTAG	2 cut(s)	146, 402
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	3 cut(s)	9, 220, 239
MboI	GATC	3 cut(s)	7, 218, 237
MfeI	CAATTG	1 cut(s)	479
MluCI	AATT	2 cut(s)	338, 479
MnlI	CCTC	5 cut(s)	28, 56, 276, 383, 499
MspI	CCGG	3 cut(s)	179, 307, 347
MspR9I	CCNGG	1 cut(s)	227
MunI	CAATTG	1 cut(s)	479
MvaI	CCWGG	1 cut(s)	227
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	3 cut(s)	7, 218, 237
NlaIII	CATG	4 cut(s)	62, 97, 172, 425
PasI	CCCWGGG	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	142, 286
PkrI	GCNGC	3 cut(s)	202, 261, 437
Psp6I	CCWGG	1 cut(s)	225
PspFI	CCCAGC	1 cut(s)	97
PspGI	CCWGG	1 cut(s)	225
PspPI	GGNCC	2 cut(s)	65, 172
PstNI	CAGNNNCTG	2 cut(s)	128, 364
RsaI	GTAC	1 cut(s)	107
RsaNI	GTAC	1 cut(s)	106
SatI	GCNGC	3 cut(s)	201, 260, 436
Sau3AI	GATC	3 cut(s)	7, 218, 237
Sau96I	GGNCC	2 cut(s)	65, 172
ScrFI	CCNGG	1 cut(s)	227
SetI	ASST	3 cut(s)	366, 377, 407
Sse9I	AATT	2 cut(s)	338, 479
SsiI	CCGC	1 cut(s)	200
SspMI	CTAG	2 cut(s)	146, 402
StyD4I	CCNGG	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	443
TaqI	TCGA	2 cut(s)	10, 221
TasI	AATT	2 cut(s)	338, 479
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	2 cut(s)	142, 286
TscAI	CASTG	1 cut(s)	129
TseI	GCWGC	2 cut(s)	259, 435
TspDTI	ATGAA	4 cut(s)	278, 393, 480, 498
TspRI	CASTG	1 cut(s)	129
XapI	RAATTY	1 cut(s)	338
XspI	CTAG	2 cut(s)	146, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.