Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005641.1

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Forward (+)

35128 .. 37182

Gene Structure 2055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005641.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgagtcgtcatcctgaggtgaagtgggcccagagggaggacaaggtcttccttactgtgcttctgcccgatgccaaggacgccaaggttaagcttgagcctgaaggagttttcatcttctccgctagtgccggtgccgggaataaccactatgagctgaaactcgaccttttcgataaggttgatgtagaggaaagcaaaataagtattggagtgaggagtatagtctgtattgttgagaaggcagagaaagtttggtggagtaagctgttgaaaggagatgggaagacaccgcattatgtcaaagtagattgggacaaatgggttgacgaagacgaggatcctccagcagcaggtgctgatgacatgggtatgggaggcatggatttctcgaaatttggtggcatgggaggtgatgatgcaatgggagggatgggcggacttggtgggatgggcggaatgggcggcatgggtggaatgggcggaatgggtggcatgggtggaatgggcgggatggatttctcgatcagttctaatggtaactgtaatctgcagaaacttgctggcatgggaggtgaaggtggaatgggtgggatggatttttcgaaacttgctggcatgggaggtgaaggtggaatgggtgggatggatttctcgaaacttgctggcatgggaggtgatggtgcaatgggtgactttgatgatagtgatgatgatcaagaagtttccaagccaggagaaccggatgctgccaagagtgaagctgatccctcaggggagaaaaaggaagctgcatcaagcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

268

Amino Acids

27.61

Weight (kDa)

4.42

Isoelectric Point (pI)

26.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	344
Acc36I	ACCTGC	1 cut(s)	344
AccB1I	GGYRCC	1 cut(s)	134
AciI	CCGC	7 cut(s)	123, 293, 438, 456, 465, 483, 510
AclWI	GGATC	3 cut(s)	335, 348, 761
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	81
AfiI	CCNNNNNNNGG	3 cut(s)	37, 138, 353
AgsI	TTSAA	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	733
AluBI	AGCT	5 cut(s)	94, 157, 268, 764, 791
AluI	AGCT	5 cut(s)	94, 157, 268, 764, 791
AlwI	GGATC	3 cut(s)	335, 348, 761
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	1 cut(s)	27
ApaI	GGGCCC	1 cut(s)	31
ApeKI	GCWGC	3 cut(s)	350, 749, 791
ApoI	RAATTY	1 cut(s)	395
AspS9I	GGNCC	2 cut(s)	27, 28
AsuC2I	CCSGG	1 cut(s)	139
AsuHPI	GGTGA	6 cut(s)	31, 425, 587, 638, 689, 704
AsuII	TTCGAA	1 cut(s)	605
AxyI	CCTNAGG	2 cut(s)	15, 772
BaeGI	GKGCMC	1 cut(s)	31
BamHI	GGATCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	134
BanII	GRGCYC	1 cut(s)	31
BbsI	GAAGAC	3 cut(s)	40, 293, 339
BbvI	GCAGC	3 cut(s)	362, 736, 778
BccI	CCATC	7 cut(s)	275, 427, 445, 508, 589, 640, 674
BciT130I	CCWGG	1 cut(s)	735
BclI	TGATCA	1 cut(s)	715
BcnI	CCSGG	1 cut(s)	139
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	551
BfuAI	ACCTGC	1 cut(s)	344
BisI	GCNGC	4 cut(s)	351, 466, 750, 792
BlsI	GCNGC	4 cut(s)	352, 467, 751, 793
Bme1390I	CCNGG	2 cut(s)	139, 735
BmgT120I	GGNCC	2 cut(s)	27, 28
BmiI	GGNNCC	3 cut(s)	29, 136, 342
BmrFI	CCNGG	2 cut(s)	139, 735
BmsI	GCATC	4 cut(s)	61, 409, 736, 803
BpiI	GAAGAC	3 cut(s)	40, 293, 339
BpmI	CTGGAG	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	605
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	714
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	2 cut(s)	75, 84
BsaWI	WCCGGW	1 cut(s)	742
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 138, 353
Bse118I	RCCGGY	1 cut(s)	131
Bse21I	CCTNAGG	2 cut(s)	15, 772
Bse3DI	GCAATG	2 cut(s)	429, 693
Bse8I	GATNNNNATC	1 cut(s)	714
BseBI	CCWGG	1 cut(s)	735
BseDI	CCNNGG	2 cut(s)	75, 84
BseGI	GGATG	7 cut(s)	10, 438, 456, 519, 600, 651, 751
BseJI	GATNNNNATC	1 cut(s)	714
BseLI	CCNNNNNNNGG	3 cut(s)	37, 138, 353
BseMI	GCAATG	2 cut(s)	429, 693
BseMII	CTCAG	2 cut(s)	6, 786
BseRI	GAGGAG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	31
BseXI	GCAGC	3 cut(s)	362, 736, 778
BshFI	GGCC	1 cut(s)	29
BshNI	GGYRCC	1 cut(s)	134
BsiSI	CCGG	3 cut(s)	132, 138, 743
BslFI	GGGAC	1 cut(s)	329
BslI	CCNNNNNNNGG	3 cut(s)	37, 138, 353
BsmFI	GGGAC	1 cut(s)	329
BsnI	GGCC	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	605
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	340, 525, 715, 766
BspACI	CCGC	7 cut(s)	123, 293, 438, 456, 465, 483, 510
BspANI	GGCC	1 cut(s)	29
BspCNI	CTCAG	2 cut(s)	7, 785
BspLI	GGNNCC	3 cut(s)	29, 136, 342
BspMAI	CTGCAG	1 cut(s)	555
BspMI	ACCTGC	1 cut(s)	344
BspPI	GGATC	3 cut(s)	335, 348, 761
BspT104I	TTCGAA	1 cut(s)	605
BspT107I	GGYRCC	1 cut(s)	134
BsrDI	GCAATG	2 cut(s)	429, 693
BsrFI	RCCGGY	1 cut(s)	131
BssAI	RCCGGY	1 cut(s)	131
BssECI	CCNNGG	2 cut(s)	75, 84
BssMI	GATC	4 cut(s)	340, 525, 715, 766
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	2 cut(s)	75, 84
Bst2UI	CCWGG	1 cut(s)	735
Bst4CI	ACNGT	2 cut(s)	58, 545
BstACI	GRCGYC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstBI	TTCGAA	1 cut(s)	605
BstC8I	GCNNGC	3 cut(s)	565, 616, 667
BstDEI	CTNAG	2 cut(s)	15, 772
BstF5I	GGATG	7 cut(s)	10, 438, 456, 519, 600, 651, 751
BstKTI	GATC	4 cut(s)	343, 528, 718, 769
BstMBI	GATC	4 cut(s)	340, 525, 715, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 356, 462
BstNI	CCWGG	1 cut(s)	735
BstSCI	CCNGG	2 cut(s)	137, 733
BstSFI	CTRYAG	1 cut(s)	551
BstSLI	GKGCMC	1 cut(s)	31
BstV1I	GCAGC	3 cut(s)	362, 736, 778
BstV2I	GAAGAC	3 cut(s)	40, 293, 339
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
Bsu36I	CCTNAGG	2 cut(s)	15, 772
BsuRI	GGCC	1 cut(s)	29
BtsCI	GGATG	7 cut(s)	10, 438, 456, 519, 600, 651, 751
BveI	ACCTGC	1 cut(s)	344
Cac8I	GCNNGC	3 cut(s)	565, 616, 667
CaiI	CAGNNNCTG	1 cut(s)	359
Cfr10I	RCCGGY	1 cut(s)	131
Cfr13I	GGNCC	2 cut(s)	27, 28
CseI	GACGC	1 cut(s)	89
CviAII	CATG	9 cut(s)	367, 382, 406, 469, 496, 568, 619, 670, 804
CviJI	RGCY	8 cut(s)	29, 94, 100, 157, 268, 733, 764, 791
CviKI_1	RGCY	8 cut(s)	29, 94, 100, 157, 268, 733, 764, 791
DdeI	CTNAG	2 cut(s)	15, 772
DpnI	GATC	4 cut(s)	342, 527, 717, 768
DpnII	GATC	4 cut(s)	340, 525, 715, 766
EciI	GGCGGA	3 cut(s)	453, 471, 498
Eco130I	CCWWGG	2 cut(s)	75, 84
Eco24I	GRGCYC	1 cut(s)	31
Eco57I	CTGAAG	1 cut(s)	123
Eco81I	CCTNAGG	2 cut(s)	15, 772
EcoRII	CCWGG	1 cut(s)	733
EcoT14I	CCWWGG	2 cut(s)	75, 84
EcoT38I	GRGCYC	1 cut(s)	31
ErhI	CCWWGG	2 cut(s)	75, 84
FaeI	CATG	9 cut(s)	370, 385, 409, 472, 499, 571, 622, 673, 807
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	9 cut(s)	366, 381, 405, 468, 495, 567, 618, 669, 803
FauI	CCCGC	1 cut(s)	503
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	4 cut(s)	351, 466, 750, 792
FokI	GGATG	6 cut(s)	445, 463, 526, 607, 658, 758
FriOI	GRGCYC	1 cut(s)	31
Fsp4HI	GCNGC	4 cut(s)	351, 466, 750, 792
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	4 cut(s)	351, 466, 750, 792
GsuI	CTGGAG	1 cut(s)	330
HaeIII	GGCC	1 cut(s)	29
HapII	CCGG	3 cut(s)	132, 138, 743
HgaI	GACGC	1 cut(s)	89
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	9 cut(s)	370, 385, 409, 472, 499, 571, 622, 673, 807
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	3 cut(s)	132, 138, 743
HphI	GGTGA	6 cut(s)	31, 425, 587, 638, 689, 704
Hpy166II	GTNNAC	1 cut(s)	328
Hpy188III	TCNNGA	5 cut(s)	14, 391, 523, 655, 719
Hpy8I	GTNNAC	1 cut(s)	328
HpyAV	CCTTC	4 cut(s)	98, 235, 572, 623
HpyCH4III	ACNGT	2 cut(s)	58, 545
HpyCH4V	TGCA	4 cut(s)	422, 553, 686, 794
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 356, 462
HpyF3I	CTNAG	2 cut(s)	15, 772
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	9 cut(s)	370, 385, 409, 472, 499, 571, 622, 673, 807
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	4 cut(s)	340, 525, 715, 766
Lsp1109I	GCAGC	3 cut(s)	362, 736, 778
LweI	GCATC	4 cut(s)	61, 409, 736, 803
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	2 cut(s)	539, 692
MalI	GATC	4 cut(s)	342, 527, 717, 768
MboI	GATC	4 cut(s)	340, 525, 715, 766
MboII	GAAGA	4 cut(s)	40, 109, 298, 344
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	31
MluCI	AATT	1 cut(s)	395
MlyI	GAGTC	1 cut(s)	13
MseI	TTAA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	371
MspI	CCGG	3 cut(s)	132, 138, 743
MspR9I	CCNGG	2 cut(s)	139, 735
MvaI	CCWGG	1 cut(s)	735
MwoI	GCNNNNNNNGC	3 cut(s)	80, 356, 462
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	4 cut(s)	340, 525, 715, 766
NlaIII	CATG	9 cut(s)	370, 385, 409, 472, 499, 571, 622, 673, 807
NlaIV	GGNNCC	3 cut(s)	29, 136, 342
NmuCI	GTSAC	1 cut(s)	692
NspV	TTCGAA	1 cut(s)	605
PaqCI	CACCTGC	1 cut(s)	344
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	4 cut(s)	352, 467, 751, 793
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	733
PspGI	CCWGG	1 cut(s)	733
PspN4I	GGNNCC	3 cut(s)	29, 136, 342
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	27, 28
PstI	CTGCAG	1 cut(s)	555
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	1 cut(s)	340
PsyI	GACNNNGTC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	371
SaqAI	TTAA	1 cut(s)	90
SatI	GCNGC	4 cut(s)	351, 466, 750, 792
Sau3AI	GATC	4 cut(s)	340, 525, 715, 766
Sau96I	GGNCC	2 cut(s)	27, 28
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	139, 735
SduI	GDGCHC	1 cut(s)	31
SfaNI	GCATC	4 cut(s)	61, 409, 736, 803
SfcI	CTRYAG	1 cut(s)	551
SfuI	TTCGAA	1 cut(s)	605
SmiMI	CAYNNNNRTG	1 cut(s)	371
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	1 cut(s)	395
SsiI	CCGC	7 cut(s)	123, 293, 438, 456, 465, 483, 510
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	2 cut(s)	137, 733
StyI	CCWWGG	2 cut(s)	75, 84
TaaI	ACNGT	2 cut(s)	58, 545
TaqI	TCGA	6 cut(s)	165, 174, 392, 524, 605, 656
TasI	AATT	1 cut(s)	395
TauI	GCSGC	1 cut(s)	468
Tru1I	TTAA	1 cut(s)	90
Tru9I	TTAA	1 cut(s)	90
TseFI	GTSAC	1 cut(s)	692
TseI	GCWGC	3 cut(s)	350, 749, 791
Tsp45I	GTSAC	1 cut(s)	692
TspDTI	ATGAA	1 cut(s)	103
Tth111I	GACNNNGTC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	395
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.