Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG351900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGATATTTTGCCCTTGTGGATTTCTTGCTACTGTGTTGTGATCCGTGCTTTAATTTGTTGCAGTCGTTATCCTGAGGTGAAGTGGGCCCAGAGGGAGGACAAGGTTTTCCTTACTGTGCTTCTGCCCGATGCCAAGGACGCTAAGGTTAAGCTTGAGCCTGAAGGTGTTTTCATCTTCTCTGCTAGTGCCGGTGCAGAGAATCACCAATATGAGCTCAAACTCGACCTTTTCGACAAGGTTAATGTAGAGGAAAGCAAAATAAGTATTGGAGTGAGGAGTATTGTCTGTATTGTGGAGAAGGCAGAGAAAGTTTGGTGGAGTAAGCTACTGAAAGGAAGTGGGAAGACGCCGCATTATGTCAAAGTAGATTGGGACAAATGGGTGGACGAAGACGAGGATCCTCCAGCAGCAGGTGCTGATGACATGGGTATGGGAGGCATGGATTTCTCGAAATTTGGTGGCATGGGAGGTGATGATGCAATGGGAGGGATGGGTGGACTGGGTGGTATGGGTGGTATGGGCGGAATGGGTGGTATGGGCGGGATGGATTTCTCGAAACTTGCTGGCATGGGAGGTGATGGTGCAATGGGTGACTTTGATGATAGTGATGATGATCAAGAAGTTTCCAAGCCAGGAGAACCGGATGCTGCCAAGAGTGAAGCTGATCCCTCAGGGGAGAAAAAGGAAGCTGCATCAAGCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

235

Amino Acids

25.04

Weight (kDa)

4.45

Isoelectric Point (pI)

25.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	25 - 101	8.7e-13	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	404
Acc36I	ACCTGC	1 cut(s)	404
AciI	CCGC	3 cut(s)	353, 525, 543
AclWI	GGATC	4 cut(s)	37, 395, 408, 662
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	183
AcyI	GRCGYC	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	97, 413
AjnI	CCWGG	1 cut(s)	634
AluBI	AGCT	5 cut(s)	154, 217, 328, 665, 692
AluI	AGCT	5 cut(s)	154, 217, 328, 665, 692
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	4 cut(s)	37, 395, 408, 662
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	1 cut(s)	87
ApaI	GGGCCC	1 cut(s)	91
ApeKI	GCWGC	3 cut(s)	410, 650, 692
ApoI	RAATTY	1 cut(s)	455
AspS9I	GGNCC	2 cut(s)	87, 88
AsuHPI	GGTGA	5 cut(s)	91, 197, 485, 590, 605
AxyI	CCTNAGG	2 cut(s)	75, 673
BaeGI	GKGCMC	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	400
BanII	GRGCYC	2 cut(s)	91, 219
BbsI	GAAGAC	2 cut(s)	353, 399
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	3 cut(s)	422, 637, 679
BccI	CCATC	3 cut(s)	487, 541, 575
BciT130I	CCWGG	1 cut(s)	636
BclI	TGATCA	1 cut(s)	616
BfaI	CTAG	1 cut(s)	186
BfuAI	ACCTGC	1 cut(s)	404
BisI	GCNGC	4 cut(s)	353, 411, 651, 693
BlsI	GCNGC	4 cut(s)	354, 412, 652, 694
Bme1390I	CCNGG	1 cut(s)	636
BmgT120I	GGNCC	2 cut(s)	87, 88
BmiI	GGNNCC	2 cut(s)	89, 402
BmrFI	CCNGG	1 cut(s)	636
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	4 cut(s)	121, 469, 637, 704
BmuI	ACTGGG	1 cut(s)	512
BpiI	GAAGAC	2 cut(s)	353, 399
BpmI	CTGGAG	1 cut(s)	390
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	176
BsaBI	GATNNNNATC	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	350
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	1 cut(s)	643
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 413
Bse118I	RCCGGY	1 cut(s)	191
Bse1I	ACTGG	1 cut(s)	507
Bse21I	CCTNAGG	2 cut(s)	75, 673
Bse3DI	GCAATG	2 cut(s)	489, 594
Bse8I	GATNNNNATC	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	636
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	3 cut(s)	498, 552, 652
BseJI	GATNNNNATC	1 cut(s)	615
BseLI	CCNNNNNNNGG	2 cut(s)	97, 413
BseMI	GCAATG	2 cut(s)	489, 594
BseMII	CTCAG	2 cut(s)	66, 687
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	292
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	422, 637, 679
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	192, 644
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	2 cut(s)	97, 413
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	89
Bsp120I	GGGCCC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	91, 219
Bsp143I	GATC	4 cut(s)	42, 400, 616, 667
BspACI	CCGC	3 cut(s)	353, 525, 543
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	2 cut(s)	67, 686
BspLI	GGNNCC	2 cut(s)	89, 402
BspMI	ACCTGC	1 cut(s)	404
BspPI	GGATC	4 cut(s)	37, 395, 408, 662
BsrDI	GCAATG	2 cut(s)	489, 594
BsrFI	RCCGGY	1 cut(s)	191
BsrI	ACTGG	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	4 cut(s)	42, 400, 616, 667
BssNI	GRCGYC	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	135
Bst2UI	CCWGG	1 cut(s)	636
Bst4CI	ACNGT	2 cut(s)	35, 118
BstACI	GRCGYC	1 cut(s)	350
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	1 cut(s)	568
BstDEI	CTNAG	3 cut(s)	75, 144, 673
BstF5I	GGATG	3 cut(s)	498, 552, 652
BstKTI	GATC	4 cut(s)	45, 403, 619, 670
BstMBI	GATC	4 cut(s)	42, 400, 616, 667
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 416
BstNI	CCWGG	1 cut(s)	636
BstSCI	CCNGG	1 cut(s)	634
BstSLI	GKGCMC	1 cut(s)	91
BstV1I	GCAGC	3 cut(s)	422, 637, 679
BstV2I	GAAGAC	2 cut(s)	353, 399
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
Bsu36I	CCTNAGG	2 cut(s)	75, 673
BsuRI	GGCC	1 cut(s)	89
BtsCI	GGATG	3 cut(s)	498, 552, 652
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	1 cut(s)	568
CaiI	CAGNNNCTG	1 cut(s)	419
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	87, 88
CseI	GACGC	2 cut(s)	149, 358
CviAII	CATG	5 cut(s)	427, 442, 466, 571, 705
CviJI	RGCY	8 cut(s)	89, 154, 160, 217, 328, 634, 665, 692
CviKI_1	RGCY	8 cut(s)	89, 154, 160, 217, 328, 634, 665, 692
DdeI	CTNAG	3 cut(s)	75, 144, 673
DpnI	GATC	4 cut(s)	44, 402, 618, 669
DpnII	GATC	4 cut(s)	42, 400, 616, 667
EciI	GGCGGA	1 cut(s)	540
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	91, 219
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	183
Eco81I	CCTNAGG	2 cut(s)	75, 673
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	634
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	91, 219
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	5 cut(s)	430, 445, 469, 574, 708
FaqI	GGGAC	1 cut(s)	389
FatI	CATG	5 cut(s)	426, 441, 465, 570, 704
FauI	CCCGC	1 cut(s)	536
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	4 cut(s)	353, 411, 651, 693
FokI	GGATG	3 cut(s)	505, 559, 659
FriOI	GRGCYC	2 cut(s)	91, 219
Fsp4HI	GCNGC	4 cut(s)	353, 411, 651, 693
FspBI	CTAG	1 cut(s)	186
GluI	GCNGC	4 cut(s)	353, 411, 651, 693
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	2 cut(s)	192, 644
HgaI	GACGC	2 cut(s)	149, 358
Hin1I	GRCGYC	1 cut(s)	350
Hin1II	CATG	5 cut(s)	430, 445, 469, 574, 708
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	2 cut(s)	192, 644
HphI	GGTGA	5 cut(s)	91, 197, 485, 590, 605
Hpy166II	GTNNAC	2 cut(s)	388, 500
Hpy188III	TCNNGA	4 cut(s)	74, 451, 556, 620
Hpy8I	GTNNAC	2 cut(s)	388, 500
HpyAV	CCTTC	2 cut(s)	158, 295
HpyCH4III	ACNGT	2 cut(s)	35, 118
HpyCH4V	TGCA	5 cut(s)	63, 197, 482, 587, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 416
HpyF3I	CTNAG	3 cut(s)	75, 144, 673
Hsp92I	GRCGYC	1 cut(s)	350
Hsp92II	CATG	5 cut(s)	430, 445, 469, 574, 708
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	4 cut(s)	42, 400, 616, 667
Lsp1109I	GCAGC	3 cut(s)	422, 637, 679
LweI	GCATC	4 cut(s)	121, 469, 637, 704
MaeI	CTAG	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	593
MalI	GATC	4 cut(s)	44, 402, 618, 669
MboI	GATC	4 cut(s)	42, 400, 616, 667
MboII	GAAGA	3 cut(s)	169, 358, 404
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	2 cut(s)	91, 219
MluCI	AATT	2 cut(s)	54, 455
MseI	TTAA	3 cut(s)	53, 150, 243
MslI	CAYNNNNRTG	2 cut(s)	210, 431
MspI	CCGG	2 cut(s)	192, 644
MspR9I	CCNGG	1 cut(s)	636
MvaI	CCWGG	1 cut(s)	636
MwoI	GCNNNNNNNGC	2 cut(s)	140, 416
NdeII	GATC	4 cut(s)	42, 400, 616, 667
NlaIII	CATG	5 cut(s)	430, 445, 469, 574, 708
NlaIV	GGNNCC	2 cut(s)	89, 402
NmuCI	GTSAC	1 cut(s)	593
PaqCI	CACCTGC	1 cut(s)	404
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	354, 412, 652, 694
Psp124BI	GAGCTC	1 cut(s)	219
Psp6I	CCWGG	1 cut(s)	634
PspGI	CCWGG	1 cut(s)	634
PspN4I	GGNNCC	2 cut(s)	89, 402
PspOMI	GGGCCC	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	87, 88
PstNI	CAGNNNCTG	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	400
RseI	CAYNNNNRTG	2 cut(s)	210, 431
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	3 cut(s)	53, 150, 243
SatI	GCNGC	4 cut(s)	353, 411, 651, 693
Sau3AI	GATC	4 cut(s)	42, 400, 616, 667
Sau96I	GGNCC	2 cut(s)	87, 88
ScrFI	CCNGG	1 cut(s)	636
SduI	GDGCHC	2 cut(s)	91, 219
SfaNI	GCATC	4 cut(s)	121, 469, 637, 704
SmiMI	CAYNNNNRTG	2 cut(s)	210, 431
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	2 cut(s)	54, 455
SsiI	CCGC	3 cut(s)	353, 525, 543
SspMI	CTAG	1 cut(s)	186
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	634
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	35, 118
TaqI	TCGA	4 cut(s)	225, 234, 452, 557
TasI	AATT	2 cut(s)	54, 455
TauI	GCSGC	1 cut(s)	355
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	3 cut(s)	53, 150, 243
Tru9I	TTAA	3 cut(s)	53, 150, 243
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	3 cut(s)	410, 650, 692
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	1 cut(s)	163
TspGWI	ACGGA	1 cut(s)	35
XapI	RAATTY	1 cut(s)	455
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.