Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Reverse (-)

42062820 .. 42065221

Gene Structure 2402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1306100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGAGTCGTCATCCGGAGGTGAAGTGGGCGCAAAGGGTGGATAAGGTTTTCCTTACTGTGCTTTTGCCTGATGCAAAGGACGCCAAGGTTAAGCTTGAACCCGATGGAACGTTCAGCTTCTCGGCTAGTGCTGGTGCGGAGAATCACCAGTATGAACTCAAACTGGATCTTTTTGATAAGGTTAATGTGGAGGAAAGCAAAATAAATGTTGGCGTGAGGAGTATCTTCTGTATTGTGGAGAAGGCGGAGCCAGAATGGTGGCCTAAGCTGTTGCGCGGAGATGGAAAGACACCGCATTATGTCAAAGTAGATTGGGACAAATGGGTGGATGAGGACGATGATACTGCCGCAGGATCAGGTCCCGGTGACATGGATTTGGGAGGGATGGATTTCTCGAAATTCGGTGGCATGGGCGGCATGGGAGGCGACGATATGGGAGGAATGGGTGACTTTGATGATAGTGATGAAGATCTAGATCTCTCAAAGGCAGAAGATGAGGCCGCCGAAGAGCAGGATGCTGTCAAGGCCGGAGTTGGTACTTCGGAAGAGAAAAAGGAAGCTACTACGAGCACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

192

Amino Acids

20.84

Weight (kDa)

4.34

Isoelectric Point (pI)

25.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CS	PF04969	5 - 81	4.3e-12	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	276
AccIII	TCCGGA	1 cut(s)	13
AciI	CCGC	7 cut(s)	137, 245, 276, 293, 348, 414, 501
AclI	AACGTT	1 cut(s)	110
AclWI	GGATC	2 cut(s)	174, 361
AcsI	RAATTY	1 cut(s)	398
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	1 cut(s)	538
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	4 cut(s)	94, 117, 268, 560
AluI	AGCT	4 cut(s)	94, 117, 268, 560
Alw21I	GWGCWC	1 cut(s)	572
AlwI	GGATC	2 cut(s)	174, 361
Aor13HI	TCCGGA	1 cut(s)	13
AoxI	GGCC	3 cut(s)	260, 498, 525
ApoI	RAATTY	1 cut(s)	398
AspLEI	GCGC	2 cut(s)	31, 276
AspS9I	GGNCC	1 cut(s)	359
AsuC2I	CCSGG	1 cut(s)	363
AsuHPI	GGTGA	4 cut(s)	31, 137, 377, 458
AvaII	GGWCC	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	572
BccI	CCATC	3 cut(s)	98, 275, 379
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BcnI	CCSGG	1 cut(s)	363
BfaI	CTAG	2 cut(s)	126, 473
BglII	AGATCT	2 cut(s)	469, 475
BisI	GCNGC	3 cut(s)	348, 415, 501
BlsI	GCNGC	3 cut(s)	349, 416, 502
Bme1390I	CCNGG	1 cut(s)	363
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	2 cut(s)	249, 361
BmrFI	CCNGG	1 cut(s)	363
BmsI	GCATC	2 cut(s)	61, 505
Bpu10I	CCTNAGC	1 cut(s)	264
BpuMI	CCSGG	1 cut(s)	363
BsaBI	GATNNNNATC	2 cut(s)	468, 474
BsaHI	GRCGYC	1 cut(s)	81
BsaJI	CCNNGG	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bse1I	ACTGG	2 cut(s)	148, 168
Bse8I	GATNNNNATC	2 cut(s)	468, 474
BseAI	TCCGGA	1 cut(s)	13
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	4 cut(s)	10, 334, 390, 520
BseJI	GATNNNNATC	2 cut(s)	468, 474
BseNI	ACTGG	2 cut(s)	148, 168
BseRI	GAGGAG	1 cut(s)	232
Bsh1236I	CGCG	1 cut(s)	276
BshFI	GGCC	3 cut(s)	262, 500, 527
BsiHKAI	GWGCWC	1 cut(s)	572
BsiSI	CCGG	3 cut(s)	14, 363, 528
BslFI	GGGAC	2 cut(s)	329, 345
BsmFI	GGGAC	2 cut(s)	329, 345
BsnI	GGCC	3 cut(s)	262, 500, 527
Bsp1286I	GDGCHC	1 cut(s)	572
Bsp13I	TCCGGA	1 cut(s)	13
Bsp143I	GATC	4 cut(s)	166, 353, 469, 475
BspACI	CCGC	7 cut(s)	137, 245, 276, 293, 348, 414, 501
BspANI	GGCC	3 cut(s)	262, 500, 527
BspEI	TCCGGA	1 cut(s)	13
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	2 cut(s)	249, 361
BspPI	GGATC	2 cut(s)	174, 361
BspQI	GCTCTTC	1 cut(s)	501
BsrI	ACTGG	2 cut(s)	148, 168
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	4 cut(s)	166, 353, 469, 475
BssNI	GRCGYC	1 cut(s)	81
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	2 cut(s)	501, 540
BstACI	GRCGYC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	264
BstF5I	GGATG	4 cut(s)	10, 334, 390, 520
BstFNI	CGCG	1 cut(s)	276
BstHHI	GCGC	2 cut(s)	31, 276
BstKTI	GATC	4 cut(s)	169, 356, 472, 478
BstMBI	GATC	4 cut(s)	166, 353, 469, 475
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 414, 423, 524
BstSCI	CCNGG	1 cut(s)	361
BstUI	CGCG	1 cut(s)	276
BstX2I	RGATCY	3 cut(s)	166, 469, 475
BstXI	CCANNNNNNTGG	1 cut(s)	258
BstYI	RGATCY	3 cut(s)	166, 469, 475
BsuRI	GGCC	3 cut(s)	262, 500, 527
BtsCI	GGATG	4 cut(s)	10, 334, 390, 520
CfoI	GCGC	2 cut(s)	31, 276
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	3 cut(s)	370, 409, 418
CviJI	RGCY	9 cut(s)	94, 117, 125, 250, 262, 268, 500, 527, 560
CviKI_1	RGCY	9 cut(s)	94, 117, 125, 250, 262, 268, 500, 527, 560
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	1 cut(s)	264
DpnI	GATC	4 cut(s)	168, 355, 471, 477
DpnII	GATC	4 cut(s)	166, 353, 469, 475
Eam1104I	CTCTTC	2 cut(s)	501, 540
EarI	CTCTTC	2 cut(s)	501, 540
EciI	GGCGGA	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	84
Eco47I	GGWCC	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	359
EcoT14I	CCWWGG	1 cut(s)	84
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	3 cut(s)	373, 412, 421
FaiI	YATR	7 cut(s)	153, 300, 371, 410, 419, 434, 574
FaqI	GGGAC	2 cut(s)	329, 345
FatI	CATG	3 cut(s)	369, 408, 417
Fnu4HI	GCNGC	3 cut(s)	348, 415, 501
FokI	GGATG	3 cut(s)	341, 397, 527
Fsp4HI	GCNGC	3 cut(s)	348, 415, 501
FspBI	CTAG	2 cut(s)	126, 473
GlaI	GCGC	2 cut(s)	30, 275
GluI	GCNGC	3 cut(s)	348, 415, 501
HaeIII	GGCC	3 cut(s)	262, 500, 527
HapII	CCGG	3 cut(s)	14, 363, 528
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	2 cut(s)	31, 276
Hin1I	GRCGYC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	373, 412, 421
Hin6I	GCGC	2 cut(s)	29, 274
HinP1I	GCGC	2 cut(s)	29, 274
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	2 cut(s)	4, 142
HpaII	CCGG	3 cut(s)	14, 363, 528
HphI	GGTGA	4 cut(s)	31, 137, 377, 458
Hpy188I	TCNGA	1 cut(s)	544
Hpy188III	TCNNGA	3 cut(s)	14, 394, 473
Hpy99I	CGWCG	1 cut(s)	431
HpyAV	CCTTC	1 cut(s)	235
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4IV	ACGT	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 414, 423, 524
HpyF3I	CTNAG	1 cut(s)	264
HpySE526I	ACGT	1 cut(s)	110
Hsp92I	GRCGYC	1 cut(s)	81
Hsp92II	CATG	3 cut(s)	373, 412, 421
HspAI	GCGC	2 cut(s)	29, 274
Kpn2I	TCCGGA	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	166, 353, 469, 475
LguI	GCTCTTC	1 cut(s)	501
LmnI	GCTCC	1 cut(s)	247
LweI	GCATC	2 cut(s)	61, 505
MaeI	CTAG	2 cut(s)	126, 473
MaeII	ACGT	1 cut(s)	110
MaeIII	GTNAC	2 cut(s)	365, 446
MalI	GATC	4 cut(s)	168, 355, 471, 477
MboI	GATC	4 cut(s)	166, 353, 469, 475
MboII	GAAGA	5 cut(s)	217, 479, 503, 518, 557
MflI	RGATCY	3 cut(s)	166, 469, 475
MhlI	GDGCHC	1 cut(s)	572
MluCI	AATT	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	8 cut(s)	10, 184, 210, 325, 374, 416, 431, 490
MroI	TCCGGA	1 cut(s)	13
MseI	TTAA	2 cut(s)	90, 183
MslI	CAYNNNNRTG	1 cut(s)	150
MspI	CCGG	3 cut(s)	14, 363, 528
MspR9I	CCNGG	1 cut(s)	363
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	4 cut(s)	80, 414, 423, 524
NciI	CCSGG	1 cut(s)	363
NdeII	GATC	4 cut(s)	166, 353, 469, 475
NlaIII	CATG	3 cut(s)	373, 412, 421
NlaIV	GGNNCC	2 cut(s)	249, 361
NmeAIII	GCCGAG	1 cut(s)	101
NmuCI	GTSAC	2 cut(s)	365, 446
PciSI	GCTCTTC	1 cut(s)	501
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	3 cut(s)	349, 416, 502
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PpuMI	RGGWCCY	1 cut(s)	359
Psp1406I	AACGTT	1 cut(s)	110
Psp5II	RGGWCCY	1 cut(s)	359
PspN4I	GGNNCC	2 cut(s)	249, 361
PspPI	GGNCC	1 cut(s)	359
PspPPI	RGGWCCY	1 cut(s)	359
PsuI	RGATCY	3 cut(s)	166, 469, 475
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	1 cut(s)	150
SapI	GCTCTTC	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	90, 183
SatI	GCNGC	3 cut(s)	348, 415, 501
Sau3AI	GATC	4 cut(s)	166, 353, 469, 475
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	363
SduI	GDGCHC	1 cut(s)	572
SfaNI	GCATC	2 cut(s)	61, 505
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	1 cut(s)	398
SsiI	CCGC	7 cut(s)	137, 245, 276, 293, 348, 414, 501
SspMI	CTAG	2 cut(s)	126, 473
StyD4I	CCNGG	1 cut(s)	361
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	58
TaiI	ACGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	395
TasI	AATT	1 cut(s)	398
TauI	GCSGC	3 cut(s)	350, 417, 503
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	90, 183
Tru9I	TTAA	2 cut(s)	90, 183
TseFI	GTSAC	2 cut(s)	365, 446
Tsp45I	GTSAC	2 cut(s)	365, 446
TspDTI	ATGAA	2 cut(s)	168, 480
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	1 cut(s)	398
XbaI	TCTAGA	1 cut(s)	472
XspI	CTAG	2 cut(s)	126, 473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.