Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8177046.1

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 543

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8177046.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 406 bp

atggatactttgcccttgtggatttcttgctactgtgttgtgatcggtgctttaatttgttgcagtcgtcttcctgaggtgaagtgggcccagagggaggacaaggttttccttaccgtgcttctgcccgatgccaaggacgctaaggttaagcttgagcctgaaggcgttttcatcttctctgctagtgccggtgcagagaatcaccaatatgagctcaaactcgaccttttcgacaaggttgatgtagaggaaagcaaaataagtattggagtgaggagtattgtctgtattgtggagaaggcggagaaagtttggtggagtaagctactgaaaggaagtgggaagacaccgcattatgtcaaagtagattgggacaaatgggtggacgaagacgaggatcctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

135

Amino Acids

15.37

Weight (kDa)

4.96

Isoelectric Point (pI)

17.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	305, 353
AclWI	GGATC	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	183
AfiI	CCNNNNNNNGG	1 cut(s)	97
AluBI	AGCT	3 cut(s)	154, 217, 328
AluI	AGCT	3 cut(s)	154, 217, 328
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	395
AoxI	GGCC	1 cut(s)	87
ApaI	GGGCCC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	87, 88
AsuHPI	GGTGA	2 cut(s)	91, 197
AxyI	CCTNAGG	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	91
BamHI	GGATCC	1 cut(s)	400
BanII	GRGCYC	2 cut(s)	91, 219
BbsI	GAAGAC	3 cut(s)	62, 353, 399
Bbv12I	GWGCWC	1 cut(s)	219
BfaI	CTAG	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	87, 88
BmiI	GGNNCC	2 cut(s)	89, 402
BmsI	GCATC	1 cut(s)	121
BpiI	GAAGAC	3 cut(s)	62, 353, 399
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	97
Bse118I	RCCGGY	1 cut(s)	191
Bse21I	CCTNAGG	1 cut(s)	75
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	97
BseMII	CTCAG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	292
BseSI	GKGCMC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	389
BslI	CCNNNNNNNGG	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	389
BsnI	GGCC	1 cut(s)	89
Bsp120I	GGGCCC	1 cut(s)	87
Bsp1286I	GDGCHC	2 cut(s)	91, 219
Bsp143I	GATC	2 cut(s)	42, 400
BspACI	CCGC	2 cut(s)	305, 353
BspANI	GGCC	1 cut(s)	89
BspCNI	CTCAG	1 cut(s)	67
BspLI	GGNNCC	2 cut(s)	89, 402
BspPI	GGATC	1 cut(s)	395
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	42, 400
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	2 cut(s)	35, 118
BstDEI	CTNAG	2 cut(s)	75, 144
BstKTI	GATC	2 cut(s)	45, 403
BstMBI	GATC	2 cut(s)	42, 400
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstSLI	GKGCMC	1 cut(s)	91
BstV2I	GAAGAC	3 cut(s)	62, 353, 399
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
Bsu36I	CCTNAGG	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	2 cut(s)	87, 88
CseI	GACGC	1 cut(s)	149
CviJI	RGCY	5 cut(s)	89, 154, 160, 217, 328
CviKI_1	RGCY	5 cut(s)	89, 154, 160, 217, 328
DdeI	CTNAG	2 cut(s)	75, 144
DpnI	GATC	2 cut(s)	44, 402
DpnII	GATC	2 cut(s)	42, 400
EciI	GGCGGA	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	217
Eco130I	CCWWGG	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	91, 219
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	183
Eco81I	CCTNAGG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	135
EcoT38I	GRGCYC	2 cut(s)	91, 219
ErhI	CCWWGG	1 cut(s)	135
FaiI	YATR	2 cut(s)	213, 360
FaqI	GGGAC	1 cut(s)	389
FriOI	GRGCYC	2 cut(s)	91, 219
FspBI	CTAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	89
HapII	CCGG	1 cut(s)	192
HgaI	GACGC	1 cut(s)	149
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	2 cut(s)	91, 197
Hpy166II	GTNNAC	1 cut(s)	388
Hpy188III	TCNNGA	1 cut(s)	74
Hpy8I	GTNNAC	1 cut(s)	388
HpyAV	CCTTC	2 cut(s)	158, 295
HpyCH4III	ACNGT	2 cut(s)	35, 118
HpyCH4V	TGCA	2 cut(s)	63, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	2 cut(s)	75, 144
Kzo9I	GATC	2 cut(s)	42, 400
LpnPI	CCDG	4 cut(s)	87, 104, 174, 205
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	1 cut(s)	186
MalI	GATC	2 cut(s)	44, 402
MboI	GATC	2 cut(s)	42, 400
MboII	GAAGA	4 cut(s)	62, 169, 358, 404
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	2 cut(s)	91, 219
MluCI	AATT	1 cut(s)	54
MnlI	CCTC	6 cut(s)	70, 87, 91, 244, 270, 391
MseI	TTAA	2 cut(s)	53, 150
MslI	CAYNNNNRTG	1 cut(s)	210
MspI	CCGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	2 cut(s)	42, 400
NlaIV	GGNNCC	2 cut(s)	89, 402
PcsI	WCGNNNNNNNCGW	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	202
Psp124BI	GAGCTC	1 cut(s)	219
PspN4I	GGNNCC	2 cut(s)	89, 402
PspOMI	GGGCCC	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	87, 88
PsuI	RGATCY	1 cut(s)	400
RseI	CAYNNNNRTG	1 cut(s)	210
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	53, 150
Sau3AI	GATC	2 cut(s)	42, 400
Sau96I	GGNCC	2 cut(s)	87, 88
SduI	GDGCHC	2 cut(s)	91, 219
SetI	ASST	8 cut(s)	81, 108, 150, 156, 219, 231, 243, 330
SfaNI	GCATC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	54
SsiI	CCGC	2 cut(s)	305, 353
SspMI	CTAG	1 cut(s)	186
SstI	GAGCTC	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	2 cut(s)	35, 118
TaqI	TCGA	2 cut(s)	225, 234
TasI	AATT	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	202
Tru1I	TTAA	2 cut(s)	53, 150
Tru9I	TTAA	2 cut(s)	53, 150
TspDTI	ATGAA	1 cut(s)	163
XspI	CTAG	1 cut(s)	186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.