Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004845

Physical Location & Seq

Genomic Coordinates Reverse (-)

38038677 .. 38040400

Gene Structure 1724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0237900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGAGAACAAATGGTTTCTTCCTCTAATCCTATCCTTGTTTATGGCTGTTCTTAGTTTAGCAGCAGCAGCTAAGCCAGTACTATTGCCACCAATTTTCATACTAGGTGATTCAACTGCTGATATAGGAACCAATAACTTCTTGCCAGGTAGCAAGGCAAGGGCAGACTTTCCCCACAATGGCATTGACTTTCCTAACTCACCAAGACCCACTGGAAGGTTCAGCAATGGCCTCAACAGTGCTGATTTTCTAGCCCAGCATTTTGGTTACAAGAGAAGTCCAAGGCCCTTTCTTTCTCTCAGTGCTACTTCTCTTCAAAAGAAGAAGTTCAGAGGTATTAACTTTGCTTCTGGAGGGTCTGGTGTTCTTGACATTACTGGACAAACATTGCTGACCAGGAATGTTCCATTTGGTGCCTCATTCAACAACCAAAAAAATGTTATCCCATTAACAGAACAGATACGGCAATTTTCATCCGTCAAGAACAATCTCATGGCCAAAATGGGTGCAGCAGCAACTGAGAAGTTTCTTTCGAAGTCTTTGATCTTCATCAGCAGTGGAAGCAATGACCTTTTCGGATATTATCATTCAAACAGTTCAATTCCCAAAGAAGAATTCTTGTCATCTTTAGTACTTGCTTATGAGAACCACTTGAAGACTTTATACACTCTTGGAGCAAGGAAGTTTGGAATCATTAGCGTCGCCCCGATTGGCTGCTGCCCATCTCAAAGGATTTTCAATGCTACTGGGGGATGTTTGGAGGAGTTGAATGATCATGCAATAGCCTTCCATTTAAAGCTGGATGCCCTATTGTGCAAGCTCAGCACTGAACACGAAGGCTTTAAGTACTCCCTTGGAAATTCATATGAAATGACAATAAACGTCATACAGAACCCTCTTCCATTCAGTAAGCAACTAGTAAATAATGAAGTCATAATGCTTAACACTTTGTCATGCATGTGTGTAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

323

Amino Acids

35.31

Weight (kDa)

9.18

Isoelectric Point (pI)

31.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	32 - 294	3e-21	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004845)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540 FvH4_2g25540
malus_domestica	MD03G1286200.v1.1 MD11G1306100.v1.1
prunus_persica	Prupe.8G259700_v2.0.a1 Prupe.8G259700_v2.0.a1
pyrus_communis	pycom11g26790
rosa_chinensis	RchiOBHm_Chr6g0293761 RchiOBHm_Chr6g0293771
rosa_laevigata	RLG00000011925 RLG00000011926
rosa_multiflora	Rmu_co8177046.1_g000001 Rmu_sc0005641.1_g000009
rosa_roxburghii	Rroxscaffold_7G00173920
rosa_rugosa	Rorug01G0286200 Rorug02G0351600 Rorug02G0481000 Rorug06G0237900
rosa_samantha	Rh6CG365100 Rh6DG346200 Rh6DG351900
rosa_wichuraiana	Rw6G030540 Rw6G030550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	413
AcoI	YGGCCR	1 cut(s)	495
AcsI	RAATTY	2 cut(s)	614, 859
AfaI	GTAC	3 cut(s)	81, 633, 848
AfiI	CCNNNNNNNGG	2 cut(s)	179, 216
AgsI	TTSAA	8 cut(s)	114, 317, 424, 591, 600, 655, 739, 769
AhlI	ACTAGT	1 cut(s)	916
AjnI	CCWGG	2 cut(s)	145, 395
AjuI	GAANNNNNNNTTGG	2 cut(s)	599, 631
AluBI	AGCT	3 cut(s)	71, 799, 820
AluI	AGCT	3 cut(s)	71, 799, 820
AlwNI	CAGNNNCTG	1 cut(s)	518
AoxI	GGCC	3 cut(s)	229, 284, 495
ApeKI	GCWGC	7 cut(s)	62, 65, 68, 509, 512, 714, 717
ApoI	RAATTY	2 cut(s)	614, 859
Asp700I	GAANNNNTTC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	119, 192
AsuII	TTCGAA	1 cut(s)	533
BalI	TGGCCA	1 cut(s)	497
BanI	GGYRCC	1 cut(s)	413
BarI	GAAGNNNNNNTAC	2 cut(s)	647, 679
BbsI	GAAGAC	1 cut(s)	662
BbvI	GCAGC	7 cut(s)	74, 77, 80, 521, 524, 701, 704
BccI	CCATC	1 cut(s)	730
BceAI	ACGGC	1 cut(s)	479
BciT130I	CCWGG	2 cut(s)	147, 397
BclI	TGATCA	1 cut(s)	772
BcuI	ACTAGT	1 cut(s)	916
BfaI	CTAG	3 cut(s)	104, 251, 917
BisI	GCNGC	7 cut(s)	63, 66, 69, 510, 513, 715, 718
BlpI	GCTNAGC	2 cut(s)	72, 821
BlsI	GCNGC	7 cut(s)	64, 67, 70, 511, 514, 716, 719
BmcAI	AGTACT	3 cut(s)	81, 633, 848
Bme1390I	CCNGG	2 cut(s)	147, 397
BmgT120I	GGNCC	1 cut(s)	285
BmiI	GGNNCC	2 cut(s)	130, 415
BmrFI	CCNGG	2 cut(s)	147, 397
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	1 cut(s)	793
BmuI	ACTGGG	1 cut(s)	756
BpiI	GAAGAC	1 cut(s)	662
BpmI	CTGGAG	1 cut(s)	372
Bpu1102I	GCTNAGC	2 cut(s)	72, 821
Bpu14I	TTCGAA	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	548
BsaJI	CCNNGG	2 cut(s)	281, 853
Bsc4I	CCNNNNNNNGG	2 cut(s)	179, 216
Bse1I	ACTGG	4 cut(s)	77, 217, 382, 751
Bse3DI	GCAATG	3 cut(s)	232, 386, 571
Bse8I	GATNNNNATC	1 cut(s)	548
BseBI	CCWGG	2 cut(s)	147, 397
BseDI	CCNNGG	2 cut(s)	281, 853
BseGI	GGATG	3 cut(s)	473, 758, 808
BseJI	GATNNNNATC	1 cut(s)	548
BseLI	CCNNNNNNNGG	2 cut(s)	179, 216
BseMI	GCAATG	3 cut(s)	232, 386, 571
BseMII	CTCAG	3 cut(s)	313, 510, 835
BseNI	ACTGG	4 cut(s)	77, 217, 382, 751
BseRI	GAGGAG	1 cut(s)	776
BseXI	GCAGC	7 cut(s)	74, 77, 80, 521, 524, 701, 704
BseYI	CCCAGC	1 cut(s)	255
BsgI	GTGCAG	1 cut(s)	528
BshFI	GGCC	3 cut(s)	231, 286, 497
BshNI	GGYRCC	1 cut(s)	413
BslI	CCNNNNNNNGG	2 cut(s)	179, 216
BsnI	GGCC	3 cut(s)	231, 286, 497
Bsp119I	TTCGAA	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	543, 772
Bsp1720I	GCTNAGC	2 cut(s)	72, 821
BspANI	GGCC	3 cut(s)	231, 286, 497
BspCNI	CTCAG	3 cut(s)	312, 511, 834
BspLI	GGNNCC	2 cut(s)	130, 415
BspT104I	TTCGAA	1 cut(s)	533
BspT107I	GGYRCC	1 cut(s)	413
BsrDI	GCAATG	3 cut(s)	232, 386, 571
BsrI	ACTGG	4 cut(s)	77, 217, 382, 751
BssECI	CCNNGG	2 cut(s)	281, 853
BssMI	GATC	2 cut(s)	543, 772
BssT1I	CCWWGG	2 cut(s)	281, 853
Bst2UI	CCWGG	2 cut(s)	147, 397
Bst4CI	ACNGT	2 cut(s)	239, 596
Bst6I	CTCTTC	2 cut(s)	318, 903
BstBI	TTCGAA	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	818
BstDEI	CTNAG	5 cut(s)	53, 72, 299, 519, 821
BstF5I	GGATG	3 cut(s)	473, 758, 808
BstKTI	GATC	2 cut(s)	546, 775
BstMBI	GATC	2 cut(s)	543, 772
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 561, 822
BstNI	CCWGG	2 cut(s)	147, 397
BstNSI	RCATGY	1 cut(s)	961
BstSCI	CCNGG	2 cut(s)	145, 395
BstV1I	GCAGC	7 cut(s)	74, 77, 80, 521, 524, 701, 704
BstV2I	GAAGAC	1 cut(s)	662
BstXI	CCANNNNNNTGG	1 cut(s)	263
BsuRI	GGCC	3 cut(s)	231, 286, 497
BtsCI	GGATG	3 cut(s)	473, 758, 808
BtsI	GCAGTG	1 cut(s)	562
BtsIMutI	CAGTG	5 cut(s)	210, 244, 307, 562, 825
Cac8I	GCNNGC	1 cut(s)	818
CaiI	CAGNNNCTG	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	285
CseI	GACGC	1 cut(s)	688
Csp6I	GTAC	3 cut(s)	80, 632, 847
CviAII	CATG	5 cut(s)	493, 776, 954, 958, 969
CviQI	GTAC	3 cut(s)	80, 632, 847
DdeI	CTNAG	5 cut(s)	53, 72, 299, 519, 821
DpnI	GATC	2 cut(s)	545, 774
DpnII	GATC	2 cut(s)	543, 772
DraI	TTTAAA	1 cut(s)	795
EaeI	YGGCCR	1 cut(s)	495
Eam1104I	CTCTTC	2 cut(s)	318, 903
EarI	CTCTTC	2 cut(s)	318, 903
Eco130I	CCWWGG	2 cut(s)	281, 853
EcoO109I	RGGNCCY	1 cut(s)	285
EcoRI	GAATTC	1 cut(s)	614
EcoRII	CCWGG	2 cut(s)	145, 395
EcoT14I	CCWWGG	2 cut(s)	281, 853
EcoT22I	ATGCAT	1 cut(s)	959
ErhI	CCWWGG	2 cut(s)	281, 853
FaeI	CATG	5 cut(s)	496, 779, 957, 961, 972
FatI	CATG	5 cut(s)	492, 775, 953, 957, 968
FauNDI	CATATG	1 cut(s)	865
FbaI	TGATCA	1 cut(s)	772
Fnu4HI	GCNGC	7 cut(s)	63, 66, 69, 510, 513, 715, 718
FokI	GGATG	3 cut(s)	460, 765, 815
Fsp4HI	GCNGC	7 cut(s)	63, 66, 69, 510, 513, 715, 718
FspBI	CTAG	3 cut(s)	104, 251, 917
GluI	GCNGC	7 cut(s)	63, 66, 69, 510, 513, 715, 718
GsaI	CCCAGC	1 cut(s)	259
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	3 cut(s)	231, 286, 497
HgaI	GACGC	1 cut(s)	688
Hin1II	CATG	5 cut(s)	496, 779, 957, 961, 972
HinfI	GANTC	2 cut(s)	110, 690
HphI	GGTGA	2 cut(s)	119, 192
Hpy188I	TCNGA	2 cut(s)	332, 578
Hpy188III	TCNNGA	3 cut(s)	351, 368, 481
Hpy99I	CGWCG	1 cut(s)	704
HpyAV	CCTTC	3 cut(s)	210, 796, 830
HpyCH4III	ACNGT	2 cut(s)	239, 596
HpyCH4IV	ACGT	1 cut(s)	882
HpyCH4V	TGCA	4 cut(s)	509, 779, 816, 957
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 561, 822
HpyF3I	CTNAG	5 cut(s)	53, 72, 299, 519, 821
HpySE526I	ACGT	1 cut(s)	882
Hsp92II	CATG	5 cut(s)	496, 779, 957, 961, 972
Ksp22I	TGATCA	1 cut(s)	772
Kzo9I	GATC	2 cut(s)	543, 772
LmnI	GCTCC	1 cut(s)	674
Lsp1109I	GCAGC	7 cut(s)	74, 77, 80, 521, 524, 701, 704
LweI	GCATC	1 cut(s)	793
MaeI	CTAG	3 cut(s)	104, 251, 917
MaeII	ACGT	1 cut(s)	882
MaeIII	GTNAC	2 cut(s)	266, 964
MalI	GATC	2 cut(s)	545, 774
MboI	GATC	2 cut(s)	543, 772
MboII	GAAGA	7 cut(s)	11, 305, 334, 538, 623, 667, 890
MlsI	TGGCCA	1 cut(s)	497
MluCI	AATT	5 cut(s)	93, 467, 600, 614, 859
MluNI	TGGCCA	1 cut(s)	497
MnlI	CCTC	7 cut(s)	33, 242, 326, 347, 427, 754, 906
Mox20I	TGGCCA	1 cut(s)	497
Mph1103I	ATGCAT	1 cut(s)	959
MroXI	GAANNNNTTC	1 cut(s)	326
MscI	TGGCCA	1 cut(s)	497
MseI	TTAA	5 cut(s)	339, 449, 794, 843, 942
MslI	CAYNNNNRTG	1 cut(s)	958
Msp20I	TGGCCA	1 cut(s)	497
MspR9I	CCNGG	2 cut(s)	147, 397
MvaI	CCWGG	2 cut(s)	147, 397
MwoI	GCNNNNNNNGC	3 cut(s)	68, 561, 822
NdeI	CATATG	1 cut(s)	865
NdeII	GATC	2 cut(s)	543, 772
NlaIII	CATG	5 cut(s)	496, 779, 957, 961, 972
NlaIV	GGNNCC	2 cut(s)	130, 415
NsiI	ATGCAT	1 cut(s)	959
NspI	RCATGY	1 cut(s)	961
NspV	TTCGAA	1 cut(s)	533
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	2 cut(s)	110, 690
PkrI	GCNGC	7 cut(s)	64, 67, 70, 511, 514, 716, 719
Psp6I	CCWGG	2 cut(s)	145, 395
PspFI	CCCAGC	1 cut(s)	255
PspGI	CCWGG	2 cut(s)	145, 395
PspN4I	GGNNCC	2 cut(s)	130, 415
PspPI	GGNCC	1 cut(s)	285
PstNI	CAGNNNCTG	1 cut(s)	518
RsaI	GTAC	3 cut(s)	81, 633, 848
RsaNI	GTAC	3 cut(s)	80, 632, 847
RseI	CAYNNNNRTG	1 cut(s)	958
SaqAI	TTAA	5 cut(s)	339, 449, 794, 843, 942
SatI	GCNGC	7 cut(s)	63, 66, 69, 510, 513, 715, 718
Sau3AI	GATC	2 cut(s)	543, 772
Sau96I	GGNCC	1 cut(s)	285
ScaI	AGTACT	3 cut(s)	81, 633, 848
ScrFI	CCNGG	2 cut(s)	147, 397
SetI	ASST	9 cut(s)	73, 109, 151, 221, 337, 573, 801, 822, 885
SfaNI	GCATC	1 cut(s)	793
SfuI	TTCGAA	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	958
SpeI	ACTAGT	1 cut(s)	916
Sse9I	AATT	5 cut(s)	93, 467, 600, 614, 859
SspMI	CTAG	3 cut(s)	104, 251, 917
StyD4I	CCNGG	2 cut(s)	145, 395
StyI	CCWWGG	2 cut(s)	281, 853
TaaI	ACNGT	2 cut(s)	239, 596
TaiI	ACGT	1 cut(s)	885
TaqI	TCGA	1 cut(s)	533
TasI	AATT	5 cut(s)	93, 467, 600, 614, 859
TatI	WGTACW	3 cut(s)	79, 631, 846
TfiI	GAWTC	2 cut(s)	110, 690
Tru1I	TTAA	5 cut(s)	339, 449, 794, 843, 942
Tru9I	TTAA	5 cut(s)	339, 449, 794, 843, 942
TscAI	CASTG	5 cut(s)	217, 244, 307, 562, 832
TseI	GCWGC	7 cut(s)	62, 65, 68, 509, 512, 714, 717
TspDTI	ATGAA	6 cut(s)	88, 462, 538, 852, 882, 942
TspGWI	ACGGA	1 cut(s)	466
TspRI	CASTG	5 cut(s)	217, 244, 307, 562, 832
XapI	RAATTY	2 cut(s)	614, 859
XceI	RCATGY	1 cut(s)	961
XmnI	GAANNNNTTC	1 cut(s)	326
XspI	CTAG	3 cut(s)	104, 251, 917
ZrmI	AGTACT	3 cut(s)	81, 633, 848
Zsp2I	ATGCAT	1 cut(s)	959

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.