Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003639

Physical Location & Seq

Genomic Coordinates Forward (+)

23887550 .. 23888933

Gene Structure 1384 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g31020.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGTGCCACTAAGCACTAGAAGTAGCAAGAGCAAGGAAGTAAACAGAGGGTCTTGGACAGCAGAAGAAGATCAGAGACTGGCTCAAGTTATTGAAGTTTATGGCCCAAGAAAGTGGAAGTCAGTTGCAACCAAAGCAGGTCTTAACCGATGTGGGAAGAGTTGCAGACTGAGATGGATGAACTATCTTAGACCAAATATTAAGAGAGGCAATATATCAGACCAAGAAGAGGATTTGATACTCAGGCTTCATAAACTCCTTGGAAACAGGTGGTCATTGATTGCTGGAAGACTACCTGGTCGGACAGACAACGAGATTAAGAATTACTGGAACTCTCACTTGAGCAAGAAGATCAAGCATAATGAGAGGTTACAACAACAAAATAGACTACTTTCAGAACCATCAAATCCAGCAGCAAAAGAGTTGTTGTTCTCATCCGACCCCCAGAATGTTGAGTTGATGGAGAACAATTCTGTATCAATTGGAATAGAAGATACCAGCAACTCGAAACGCCAGGAGAACTACTTCTTCAAGTCCATGAGCTTTAATGGATCATTTGGGGATGAGTTCTTGTTTGATGGCTCAAGTGCTGAGGAGGGGCCTTTGAATCTGGAGTGGATGAATAGATTTCTAGAAATGGATGAGAGTTGGTTTACTCTGCATGGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0080090 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

224

Amino Acids

25.81

Weight (kDa)

8.83

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	35 - 80	1.1e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	39 - 92	5.6e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66380
fragaria_vesca	FvH4_2g31020 FvH4_2g31020 FvH4_5g19400 FvH4_5g19400 FvH4_5g19400
malus_domestica	MD04G1060200.v1.1 MD06G1053100.v1.1 MD15G1050300.v1.1
prunus_persica	Prupe.1G404700_v2.0.a1 Prupe.1G404800_v2.0.a1 Prupe.5G065500_v2.0.a1
pyrus_communis	pycom04g05380 pycom06g04480 pycom15g04870
rosa_chinensis	RchiOBHm_Chr6g0311771 RchiOBHm_Chr7g0203911
rosa_laevigata	RLG00000003500 RLG00000010375
rosa_multiflora	Rmu_sc0002888.1_g000040 Rmu_sc0014006.1_g000003 Rmu_sc0015961.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253470 Rroxscaffold_7G00157320
rosa_rugosa	Rorug07G0079200.1 Rorug07G0079300
rosa_samantha	Rh6AG506900 Rh6BG517700 Rh6CG523300 Rh6DG509200 Rh7AG209200 Rh7CG221600 Rh7DG216200
rosa_wichuraiana	Rw6G044100 Rw7G018230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	297
Acc36I	ACCTGC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	559
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	3 cut(s)	95, 532, 607
AjnI	CCWGG	2 cut(s)	295, 513
AluBI	AGCT	1 cut(s)	543
AluI	AGCT	1 cut(s)	543
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	559
AlwNI	CAGNNNCTG	1 cut(s)	79
AoxI	GGCC	2 cut(s)	103, 599
ApeKI	GCWGC	1 cut(s)	413
Asp700I	GAANNNNTTC	1 cut(s)	524
AspS9I	GGNCC	2 cut(s)	104, 599
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	295
BbvCI	CCTCAGC	1 cut(s)	591
BbvI	GCAGC	1 cut(s)	425
BccI	CCATC	4 cut(s)	168, 409, 454, 572
BciT130I	CCWGG	2 cut(s)	297, 515
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	2 cut(s)	18, 632
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
Bme1390I	CCNGG	2 cut(s)	297, 515
BmgT120I	GGNCC	2 cut(s)	104, 599
BmiI	GGNNCC	2 cut(s)	6, 600
BmrFI	CCNGG	2 cut(s)	297, 515
BpiI	GAAGAC	1 cut(s)	295
BplI	GAGNNNNNCTC	2 cut(s)	67, 99
BpmI	CTGGAG	1 cut(s)	632
Bpu10I	CCTNAGC	1 cut(s)	591
BpuEI	CTTGAG	3 cut(s)	69, 361, 568
BsaJI	CCNNGG	1 cut(s)	259
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	84, 332
BseBI	CCWGG	2 cut(s)	297, 515
BseDI	CCNNGG	1 cut(s)	259
BseGI	GGATG	5 cut(s)	183, 434, 568, 624, 646
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	3 cut(s)	161, 256, 582
BseNI	ACTGG	2 cut(s)	84, 332
BseRI	GAGGAG	1 cut(s)	608
BseXI	GCAGC	1 cut(s)	425
BshFI	GGCC	2 cut(s)	105, 601
BshNI	GGYRCC	1 cut(s)	4
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	105, 601
Bsp143I	GATC	3 cut(s)	70, 351, 551
BspANI	GGCC	2 cut(s)	105, 601
BspCNI	CTCAG	3 cut(s)	162, 255, 583
BspLI	GGNNCC	2 cut(s)	6, 600
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	559
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	84, 332
BssECI	CCNNGG	1 cut(s)	259
BssMI	GATC	3 cut(s)	70, 351, 551
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	2 cut(s)	297, 515
Bst6I	CTCTTC	2 cut(s)	152, 222
BstDEI	CTNAG	5 cut(s)	11, 170, 188, 242, 591
BstF5I	GGATG	5 cut(s)	183, 434, 568, 624, 646
BstKTI	GATC	3 cut(s)	73, 354, 554
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	3 cut(s)	70, 351, 551
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	2 cut(s)	297, 515
BstSCI	CCNGG	2 cut(s)	295, 513
BstV1I	GCAGC	1 cut(s)	425
BstV2I	GAAGAC	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	105, 601
BtsCI	GGATG	5 cut(s)	183, 434, 568, 624, 646
BveI	ACCTGC	1 cut(s)	128
CaiI	CAGNNNCTG	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	104, 599
CsiI	ACCWGGT	1 cut(s)	295
CviAII	CATG	2 cut(s)	538, 662
CviJI	RGCY	6 cut(s)	83, 105, 247, 543, 582, 601
CviKI_1	RGCY	6 cut(s)	83, 105, 247, 543, 582, 601
DdeI	CTNAG	5 cut(s)	11, 170, 188, 242, 591
DpnI	GATC	3 cut(s)	72, 353, 553
DpnII	GATC	3 cut(s)	70, 351, 551
DrdI	GACNNNNNNGTC	1 cut(s)	297
DseDI	GACNNNNNNGTC	1 cut(s)	297
Eam1104I	CTCTTC	2 cut(s)	152, 222
EarI	CTCTTC	2 cut(s)	152, 222
Eco130I	CCWWGG	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	599
EcoRII	CCWGG	2 cut(s)	295, 513
EcoT14I	CCWWGG	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	2 cut(s)	541, 665
FaiI	YATR	6 cut(s)	102, 215, 252, 360, 539, 663
FalI	AAGNNNNNCTT	2 cut(s)	126, 158
FatI	CATG	2 cut(s)	537, 661
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	5 cut(s)	190, 421, 575, 631, 653
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	2 cut(s)	18, 632
GluI	GCNGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	632
HaeIII	GGCC	2 cut(s)	105, 601
Hin1II	CATG	2 cut(s)	541, 665
HinfI	GANTC	1 cut(s)	607
Hpy166II	GTNNAC	2 cut(s)	43, 654
Hpy188I	TCNGA	5 cut(s)	75, 220, 303, 397, 439
Hpy188III	TCNNGA	2 cut(s)	611, 632
Hpy8I	GTNNAC	2 cut(s)	43, 654
HpyCH4V	TGCA	3 cut(s)	128, 165, 661
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
HpyF3I	CTNAG	5 cut(s)	11, 170, 188, 242, 591
Hsp92II	CATG	2 cut(s)	541, 665
Kzo9I	GATC	3 cut(s)	70, 351, 551
Lsp1109I	GCAGC	1 cut(s)	425
MabI	ACCWGGT	1 cut(s)	295
MaeI	CTAG	2 cut(s)	18, 632
MaeIII	GTNAC	1 cut(s)	369
MalI	GATC	3 cut(s)	72, 353, 553
MboI	GATC	3 cut(s)	70, 351, 551
MboII	GAAGA	8 cut(s)	77, 80, 169, 239, 300, 361, 503, 520
MfeI	CAATTG	1 cut(s)	480
MluCI	AATT	3 cut(s)	322, 469, 480
MmeI	TCCRAC	2 cut(s)	281, 462
MnlI	CCTC	6 cut(s)	41, 200, 223, 360, 586, 589
MroXI	GAANNNNTTC	1 cut(s)	524
MseI	TTAA	4 cut(s)	144, 201, 318, 546
MspR9I	CCNGG	2 cut(s)	297, 515
MunI	CAATTG	1 cut(s)	480
MvaI	CCWGG	2 cut(s)	297, 515
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	3 cut(s)	70, 351, 551
NlaIII	CATG	2 cut(s)	541, 665
NlaIV	GGNNCC	2 cut(s)	6, 600
PdmI	GAANNNNTTC	1 cut(s)	524
PfeI	GAWTC	1 cut(s)	607
PkrI	GCNGC	1 cut(s)	415
Psp6I	CCWGG	2 cut(s)	295, 513
PspGI	CCWGG	2 cut(s)	295, 513
PspN4I	GGNNCC	2 cut(s)	6, 600
PspPI	GGNCC	2 cut(s)	104, 599
PstNI	CAGNNNCTG	1 cut(s)	79
SaqAI	TTAA	4 cut(s)	144, 201, 318, 546
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	3 cut(s)	70, 351, 551
Sau96I	GGNCC	2 cut(s)	104, 599
ScrFI	CCNGG	2 cut(s)	297, 515
SetI	ASST	5 cut(s)	142, 272, 298, 371, 545
SexAI	ACCWGGT	1 cut(s)	295
SmlI	CTYRAG	3 cut(s)	84, 340, 583
SmoI	CTYRAG	3 cut(s)	84, 340, 583
Sse9I	AATT	3 cut(s)	322, 469, 480
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	18, 632
StyD4I	CCNGG	2 cut(s)	295, 513
StyI	CCWWGG	1 cut(s)	259
TaqI	TCGA	1 cut(s)	506
TasI	AATT	3 cut(s)	322, 469, 480
TfiI	GAWTC	1 cut(s)	607
Tru1I	TTAA	4 cut(s)	144, 201, 318, 546
Tru9I	TTAA	4 cut(s)	144, 201, 318, 546
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	3 cut(s)	194, 239, 635
XbaI	TCTAGA	1 cut(s)	631
XmnI	GAANNNNTTC	1 cut(s)	524
XspI	CTAG	2 cut(s)	18, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.