Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0003639

Physical Location & Seq

Genomic Coordinates Reverse (-)

67267384 .. 67268222

Gene Structure 839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G044100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGTGCCATTAAGCACTAGAAGTTACAAGAACAAGGAAATAAACAGAGGTTCTTGGACAGCAGAAGAAGATCAGAGACTGGCTCAAGTTATTGAAGTCCATGGCCCAAGAAAGTGGAAGTCTGTTGCAACCAAAGCAGGTCTAAACCGATGTGGGAAGAGTTGCAGACTGAGATGGATGAACTATCTTAGACCAAATATTAAGAGAGGCAATATATCAGACCAAGAAGAGGACTTGATACTCAGGCTTCATAAACTCCTTGGAAACAGGTGGTCATTGATTGCCGGAAGACTGCCTGGTCGAACAGACAACGAGATTAAGAATTACTGGAACTCTCATTTGAGCAAGAAGATCAAGCATAACGAGAGATCACAAAAACAAAACAGACTACTTTGTGCATCATCAAATCCAGCAGCACAAGAGTTGTCCTCCTCGTCCGAGCCTCAGAATGTTGAGTTAATGGAGAACAATGCTGTACCAATTGGAATGGAAGATGACAGCTCGAAACGCGAGGAGAACTACTTCTTCAAGTCCATGAGCTTTAATGGATCATCTGGAGATGAGTTCTTGTTTGATGGCTCAACTGCTGACGAGGGGCCTCTGAATTTGGAGTGGATGAATAGATTTCTAGAAATGGATGAGAGTTGGTTCACTCTGCATGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0080090 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

222

Amino Acids

25.66

Weight (kDa)

7.73

Isoelectric Point (pI)

58.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	16 - 63	8.3e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	19 - 77	3.4e-13	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	69 - 114	1.4e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	73 - 130	1.8e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66380
fragaria_vesca	FvH4_2g31020 FvH4_2g31020 FvH4_5g19400 FvH4_5g19400 FvH4_5g19400
malus_domestica	MD04G1060200.v1.1 MD06G1053100.v1.1 MD15G1050300.v1.1
prunus_persica	Prupe.1G404700_v2.0.a1 Prupe.1G404800_v2.0.a1 Prupe.5G065500_v2.0.a1
pyrus_communis	pycom04g05380 pycom06g04480 pycom15g04870
rosa_chinensis	RchiOBHm_Chr6g0311771 RchiOBHm_Chr7g0203911
rosa_laevigata	RLG00000003500 RLG00000010375
rosa_multiflora	Rmu_sc0002888.1_g000040 Rmu_sc0014006.1_g000003 Rmu_sc0015961.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253470 Rroxscaffold_7G00157320
rosa_rugosa	Rorug07G0079200.1 Rorug07G0079300
rosa_samantha	Rh6AG506900 Rh6BG517700 Rh6CG523300 Rh6DG509200 Rh7AG209200 Rh7CG221600 Rh7DG216200
rosa_wichuraiana	Rw6G044100 Rw7G018230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	297
Acc36I	ACCTGC	1 cut(s)	128
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	1 cut(s)	510
AclWI	GGATC	1 cut(s)	556
AcsI	RAATTY	1 cut(s)	604
AfaI	GTAC	1 cut(s)	477
AfiI	CCNNNNNNNGG	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	95, 529
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	2 cut(s)	501, 540
AluI	AGCT	2 cut(s)	501, 540
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	556
AlwNI	CAGNNNCTG	1 cut(s)	79
AoxI	GGCC	2 cut(s)	103, 596
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	1 cut(s)	604
Asp700I	GAANNNNTTC	1 cut(s)	521
AspS9I	GGNCC	2 cut(s)	104, 596
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	295
BbvI	GCAGC	1 cut(s)	425
BccI	CCATC	2 cut(s)	168, 569
BciT130I	CCWGG	1 cut(s)	297
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	2 cut(s)	18, 629
BfuAI	ACCTGC	1 cut(s)	128
BisI	GCNGC	1 cut(s)	414
BlsI	GCNGC	1 cut(s)	415
Bme1390I	CCNGG	1 cut(s)	297
BmgT120I	GGNCC	2 cut(s)	104, 596
BmiI	GGNNCC	2 cut(s)	6, 597
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	407
BpiI	GAAGAC	1 cut(s)	295
BplI	GAGNNNNNCTC	4 cut(s)	67, 99, 413, 445
BpmI	CTGGAG	1 cut(s)	576
BpuEI	CTTGAG	1 cut(s)	69
BsaJI	CCNNGG	2 cut(s)	100, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	229
Bse1I	ACTGG	2 cut(s)	84, 332
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	2 cut(s)	100, 259
BseGI	GGATG	3 cut(s)	183, 621, 643
BseLI	CCNNNNNNNGG	1 cut(s)	229
BseMII	CTCAG	3 cut(s)	161, 256, 458
BseNI	ACTGG	2 cut(s)	84, 332
BseRI	GAGGAG	2 cut(s)	421, 527
BseXI	GCAGC	1 cut(s)	425
Bsh1236I	CGCG	1 cut(s)	510
BshFI	GGCC	2 cut(s)	105, 598
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	285
BslI	CCNNNNNNNGG	1 cut(s)	229
BsmAI	GTCTC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	105, 598
Bsp143I	GATC	4 cut(s)	70, 351, 368, 548
Bsp19I	CCATGG	1 cut(s)	100
BspANI	GGCC	2 cut(s)	105, 598
BspCNI	CTCAG	3 cut(s)	162, 255, 457
BspFNI	CGCG	1 cut(s)	510
BspLI	GGNNCC	2 cut(s)	6, 597
BspMI	ACCTGC	1 cut(s)	128
BspPI	GGATC	1 cut(s)	556
BspT107I	GGYRCC	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	84, 332
BssECI	CCNNGG	2 cut(s)	100, 259
BssMI	GATC	4 cut(s)	70, 351, 368, 548
BssT1I	CCWWGG	2 cut(s)	100, 259
Bst2UI	CCWGG	1 cut(s)	297
Bst6I	CTCTTC	2 cut(s)	152, 222
BstDEI	CTNAG	4 cut(s)	170, 188, 242, 444
BstDSI	CCRYGG	1 cut(s)	100
BstF5I	GGATG	3 cut(s)	183, 621, 643
BstFNI	CGCG	1 cut(s)	510
BstKTI	GATC	4 cut(s)	73, 354, 371, 551
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	4 cut(s)	70, 351, 368, 548
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 507
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	295
BstUI	CGCG	1 cut(s)	510
BstV1I	GCAGC	1 cut(s)	425
BstV2I	GAAGAC	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	105, 598
BtgI	CCRYGG	1 cut(s)	100
BtsCI	GGATG	3 cut(s)	183, 621, 643
BveI	ACCTGC	1 cut(s)	128
CaiI	CAGNNNCTG	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	104, 596
Csp6I	GTAC	1 cut(s)	476
CviAII	CATG	3 cut(s)	101, 535, 659
CviJI	RGCY	8 cut(s)	83, 105, 247, 442, 501, 540, 579, 598
CviKI_1	RGCY	8 cut(s)	83, 105, 247, 442, 501, 540, 579, 598
CviQI	GTAC	1 cut(s)	476
DdeI	CTNAG	4 cut(s)	170, 188, 242, 444
DpnI	GATC	4 cut(s)	72, 353, 370, 550
DpnII	GATC	4 cut(s)	70, 351, 368, 548
DrdI	GACNNNNNNGTC	1 cut(s)	297
DseDI	GACNNNNNNGTC	1 cut(s)	297
Eam1104I	CTCTTC	2 cut(s)	152, 222
EarI	CTCTTC	2 cut(s)	152, 222
Eco130I	CCWWGG	2 cut(s)	100, 259
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	100, 259
ErhI	CCWWGG	2 cut(s)	100, 259
FaeI	CATG	3 cut(s)	104, 538, 662
FaiI	YATR	6 cut(s)	102, 215, 252, 360, 536, 660
FatI	CATG	3 cut(s)	100, 534, 658
Fnu4HI	GCNGC	1 cut(s)	414
FokI	GGATG	3 cut(s)	190, 628, 650
Fsp4HI	GCNGC	1 cut(s)	414
FspBI	CTAG	2 cut(s)	18, 629
GluI	GCNGC	1 cut(s)	414
GsuI	CTGGAG	1 cut(s)	576
HaeIII	GGCC	2 cut(s)	105, 598
HapII	CCGG	1 cut(s)	285
Hin1II	CATG	3 cut(s)	104, 538, 662
HpaII	CCGG	1 cut(s)	285
Hpy166II	GTNNAC	1 cut(s)	651
Hpy188I	TCNGA	5 cut(s)	75, 220, 439, 447, 603
Hpy188III	TCNNGA	2 cut(s)	555, 629
Hpy8I	GTNNAC	1 cut(s)	651
HpyCH4V	TGCA	4 cut(s)	128, 165, 398, 658
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 507
HpyF3I	CTNAG	4 cut(s)	170, 188, 242, 444
Hsp92II	CATG	3 cut(s)	104, 538, 662
Kzo9I	GATC	4 cut(s)	70, 351, 368, 548
Lsp1109I	GCAGC	1 cut(s)	425
LweI	GCATC	1 cut(s)	407
MaeI	CTAG	2 cut(s)	18, 629
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	4 cut(s)	72, 353, 370, 550
MboI	GATC	4 cut(s)	70, 351, 368, 548
MboII	GAAGA	8 cut(s)	77, 80, 169, 239, 300, 361, 503, 517
MfeI	CAATTG	1 cut(s)	480
MluCI	AATT	3 cut(s)	322, 480, 604
MnlI	CCTC	9 cut(s)	41, 200, 223, 439, 442, 453, 505, 586, 609
MroXI	GAANNNNTTC	1 cut(s)	521
MseI	TTAA	5 cut(s)	11, 201, 318, 458, 543
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	297
MunI	CAATTG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	510
MwoI	GCNNNNNNNGC	2 cut(s)	134, 507
NcoI	CCATGG	1 cut(s)	100
NdeII	GATC	4 cut(s)	70, 351, 368, 548
NlaIII	CATG	3 cut(s)	104, 538, 662
NlaIV	GGNNCC	2 cut(s)	6, 597
PdmI	GAANNNNTTC	1 cut(s)	521
PkrI	GCNGC	1 cut(s)	415
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	6, 597
PspPI	GGNCC	2 cut(s)	104, 596
PstNI	CAGNNNCTG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	477
RsaNI	GTAC	1 cut(s)	476
SaqAI	TTAA	5 cut(s)	11, 201, 318, 458, 543
SatI	GCNGC	1 cut(s)	414
Sau3AI	GATC	4 cut(s)	70, 351, 368, 548
Sau96I	GGNCC	2 cut(s)	104, 596
ScrFI	CCNGG	1 cut(s)	297
SetI	ASST	5 cut(s)	52, 142, 272, 503, 542
SfaNI	GCATC	1 cut(s)	407
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	3 cut(s)	322, 480, 604
SspI	AATATT	1 cut(s)	199
SspMI	CTAG	2 cut(s)	18, 629
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	2 cut(s)	100, 259
TaqI	TCGA	2 cut(s)	301, 503
TasI	AATT	3 cut(s)	322, 480, 604
Tru1I	TTAA	5 cut(s)	11, 201, 318, 458, 543
Tru9I	TTAA	5 cut(s)	11, 201, 318, 458, 543
TseI	GCWGC	1 cut(s)	413
TspDTI	ATGAA	3 cut(s)	194, 239, 632
XapI	RAATTY	1 cut(s)	604
XbaI	TCTAGA	1 cut(s)	628
XmnI	GAANNNNTTC	1 cut(s)	521
XspI	CTAG	2 cut(s)	18, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.