Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0003639

Physical Location & Seq

Genomic Coordinates Forward (+)

3434670 .. 3435870

Gene Structure 1201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1050300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGTTCCAGTTAGCAGTCGAAGTTCTAAGAAAGATGTAAACAGAGGCTCCTGGACGGCAGAGGAGGACCAAAAACTTGCTCAAGTTATAGAAATCCACGGTCCGAGGCGTTGGAAGTCCATTGCAACTAAAGCAGGTCTTAAGCGATGTGGGAAGAGTTGCAGGTTAAGATGGATGAACTATCTTAGACCTAATATTAAGAGAGGCAATATTTCAGACCAAGAAGAAGACTTAATTCTCAGGCTTCATAAGCTTCTGGGAAACAGGTGGTCGTTGATTGCCGGAAGACTACCTGGTCGAACAGATAACGAGATCAAGAATTACTGGAACTCTCATTTGAGCAAAAAGATGAAGCAAAACAGAGCAGTTTCAAAGACAGTGCAAGGGTCCACAGAGCAAAAGAATATCAAAGCAAACGACGTGAATGCTTTAACAATTGAAAGAGAAGACGCCTTTAAACTTGAGGAGAACTTCAACTTCGGTTTCAATGGCGGCCAATTCTTCAACTGCTCGAGCAGCGAACAAGGGCCTCTGAATTTGGAGTGGATGAATAAATTCCTTGAAATGGATGAGAGTTGGTTTACTTTGCATGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0080090 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

200

Amino Acids

23.07

Weight (kDa)

9.59

Isoelectric Point (pI)

65.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	15 - 62	1.2e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	18 - 76	7.7e-14	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	68 - 113	1.2e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	72 - 119	1.4e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66380
fragaria_vesca	FvH4_2g31020 FvH4_2g31020 FvH4_5g19400 FvH4_5g19400 FvH4_5g19400
malus_domestica	MD04G1060200.v1.1 MD06G1053100.v1.1 MD15G1050300.v1.1
prunus_persica	Prupe.1G404700_v2.0.a1 Prupe.1G404800_v2.0.a1 Prupe.5G065500_v2.0.a1
pyrus_communis	pycom04g05380 pycom06g04480 pycom15g04870
rosa_chinensis	RchiOBHm_Chr6g0311771 RchiOBHm_Chr7g0203911
rosa_laevigata	RLG00000003500 RLG00000010375
rosa_multiflora	Rmu_sc0002888.1_g000040 Rmu_sc0014006.1_g000003 Rmu_sc0015961.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253470 Rroxscaffold_7G00157320
rosa_rugosa	Rorug07G0079200.1 Rorug07G0079300
rosa_samantha	Rh6AG506900 Rh6BG517700 Rh6CG523300 Rh6DG509200 Rh7AG209200 Rh7CG221600 Rh7DG216200
rosa_wichuraiana	Rw6G044100 Rw7G018230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	294
Acc36I	ACCTGC	2 cut(s)	125, 153
AciI	CCGC	1 cut(s)	492
AcoI	YGGCCR	1 cut(s)	493
AcsI	RAATTY	2 cut(s)	535, 554
AcyI	GRCGYC	1 cut(s)	450
AfiI	CCNNNNNNNGG	1 cut(s)	565
AflII	CTTAAG	1 cut(s)	140
AgsI	TTSAA	6 cut(s)	372, 440, 475, 487, 505, 563
AjiI	CACGTC	1 cut(s)	421
AjnI	CCWGG	2 cut(s)	50, 292
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	511
AoxI	GGCC	2 cut(s)	493, 527
ApeKI	GCWGC	1 cut(s)	516
ApoI	RAATTY	2 cut(s)	535, 554
Asp700I	GAANNNNTTC	1 cut(s)	554
AspS9I	GGNCC	4 cut(s)	67, 101, 387, 527
AvaI	CYCGRG	1 cut(s)	511
AvaII	GGWCC	3 cut(s)	67, 101, 387
BbsI	GAAGAC	3 cut(s)	234, 292, 453
BbvI	GCAGC	1 cut(s)	528
BccI	CCATC	1 cut(s)	165
BceAI	ACGGC	1 cut(s)	72
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	2 cut(s)	52, 294
BfrI	CTTAAG	1 cut(s)	140
BfuAI	ACCTGC	2 cut(s)	125, 153
BisI	GCNGC	2 cut(s)	493, 517
BlsI	GCNGC	2 cut(s)	494, 518
Bme1390I	CCNGG	2 cut(s)	52, 294
Bme18I	GGWCC	3 cut(s)	67, 101, 387
BmeT110I	CYCGRG	1 cut(s)	511
BmgBI	CACGTC	1 cut(s)	421
BmgT120I	GGNCC	4 cut(s)	67, 101, 387, 527
BmiI	GGNNCC	3 cut(s)	6, 49, 388
BmrFI	CCNGG	2 cut(s)	52, 294
BpiI	GAAGAC	3 cut(s)	234, 292, 453
BpuEI	CTTGAG	2 cut(s)	66, 482
BsaHI	GRCGYC	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	97, 104
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	565
Bse1I	ACTGG	2 cut(s)	8, 329
Bse3DI	GCAATG	1 cut(s)	120
BseBI	CCWGG	2 cut(s)	52, 294
BseDI	CCNNGG	2 cut(s)	97, 104
BseGI	GGATG	3 cut(s)	180, 552, 574
BseLI	CCNNNNNNNGG	1 cut(s)	565
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	1 cut(s)	253
BseNI	ACTGG	2 cut(s)	8, 329
BseRI	GAGGAG	2 cut(s)	77, 479
BseXI	GCAGC	1 cut(s)	528
BshFI	GGCC	2 cut(s)	495, 529
BsiHKCI	CYCGRG	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	282
BslI	CCNNNNNNNGG	1 cut(s)	565
BsmI	GAATGC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	495, 529
BsoBI	CYCGRG	1 cut(s)	511
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	1 cut(s)	492
BspANI	GGCC	2 cut(s)	495, 529
BspCNI	CTCAG	1 cut(s)	252
BspLI	GGNNCC	3 cut(s)	6, 49, 388
BspMI	ACCTGC	2 cut(s)	125, 153
BspTI	CTTAAG	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	2 cut(s)	8, 329
BssECI	CCNNGG	2 cut(s)	97, 104
BssMI	GATC	1 cut(s)	312
BssNI	GRCGYC	1 cut(s)	450
Bst2UI	CCWGG	2 cut(s)	52, 294
Bst4CI	ACNGT	2 cut(s)	101, 379
Bst6I	CTCTTC	1 cut(s)	149
BstACI	GRCGYC	1 cut(s)	450
BstAFI	CTTAAG	1 cut(s)	140
BstDEI	CTNAG	3 cut(s)	27, 185, 239
BstDSI	CCRYGG	1 cut(s)	97
BstF5I	GGATG	3 cut(s)	180, 552, 574
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 250, 516
BstNI	CCWGG	2 cut(s)	52, 294
BstSCI	CCNGG	2 cut(s)	50, 292
BstV1I	GCAGC	1 cut(s)	528
BstV2I	GAAGAC	3 cut(s)	234, 292, 453
BsuRI	GGCC	2 cut(s)	495, 529
BtgI	CCRYGG	1 cut(s)	97
BtgZI	GCGATG	1 cut(s)	160
BtrI	CACGTC	1 cut(s)	421
BtsCI	GGATG	3 cut(s)	180, 552, 574
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	2 cut(s)	125, 153
Cfr13I	GGNCC	4 cut(s)	67, 101, 387, 527
CpoI	CGGWCCG	1 cut(s)	101
CseI	GACGC	1 cut(s)	458
CsiI	ACCWGGT	1 cut(s)	292
CspI	CGGWCCG	1 cut(s)	101
CviAII	CATG	1 cut(s)	590
CviJI	RGCY	5 cut(s)	48, 244, 253, 495, 529
CviKI_1	RGCY	5 cut(s)	48, 244, 253, 495, 529
DdeI	CTNAG	3 cut(s)	27, 185, 239
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
DraI	TTTAAA	1 cut(s)	457
DrdI	GACNNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	149
EarI	CTCTTC	1 cut(s)	149
Eco47I	GGWCC	3 cut(s)	67, 101, 387
Eco88I	CYCGRG	1 cut(s)	511
EcoO109I	RGGNCCY	1 cut(s)	527
EcoRII	CCWGG	2 cut(s)	50, 292
FaeI	CATG	1 cut(s)	593
FaiI	YATR	3 cut(s)	89, 249, 591
FalI	AAGNNNNNCTT	2 cut(s)	123, 155
FatI	CATG	1 cut(s)	589
Fnu4HI	GCNGC	2 cut(s)	493, 517
FokI	GGATG	3 cut(s)	187, 559, 581
Fsp4HI	GCNGC	2 cut(s)	493, 517
GluI	GCNGC	2 cut(s)	493, 517
HaeIII	GGCC	2 cut(s)	495, 529
HapII	CCGG	1 cut(s)	282
HgaI	GACGC	1 cut(s)	458
Hin1I	GRCGYC	1 cut(s)	450
Hin1II	CATG	1 cut(s)	593
HindIII	AAGCTT	1 cut(s)	251
HpaII	CCGG	1 cut(s)	282
Hpy166II	GTNNAC	3 cut(s)	40, 390, 582
Hpy188I	TCNGA	3 cut(s)	105, 217, 534
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	3 cut(s)	40, 390, 582
Hpy99I	CGWCG	1 cut(s)	422
HpyCH4III	ACNGT	2 cut(s)	101, 379
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	4 cut(s)	125, 162, 382, 589
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 250, 516
HpyF3I	CTNAG	3 cut(s)	27, 185, 239
HpySE526I	ACGT	1 cut(s)	420
Hsp92I	GRCGYC	1 cut(s)	450
Hsp92II	CATG	1 cut(s)	593
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	1 cut(s)	53
Lsp1109I	GCAGC	1 cut(s)	528
MabI	ACCWGGT	1 cut(s)	292
MaeII	ACGT	1 cut(s)	420
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	6 cut(s)	166, 236, 239, 297, 458, 493
MfeI	CAATTG	1 cut(s)	435
MluCI	AATT	6 cut(s)	234, 319, 435, 497, 535, 554
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	7 cut(s)	38, 55, 58, 99, 197, 457, 540
MroXI	GAANNNNTTC	1 cut(s)	554
MseI	TTAA	6 cut(s)	141, 167, 198, 233, 431, 456
MspCI	CTTAAG	1 cut(s)	140
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	2 cut(s)	52, 294
MunI	CAATTG	1 cut(s)	435
Mva1269I	GAATGC	1 cut(s)	430
MvaI	CCWGG	2 cut(s)	52, 294
MwoI	GCNNNNNNNGC	3 cut(s)	131, 250, 516
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	1 cut(s)	593
NlaIV	GGNNCC	3 cut(s)	6, 49, 388
PaeR7I	CTCGAG	1 cut(s)	511
PctI	GAATGC	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	554
PfoI	TCCNGGA	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	494, 518
Psp6I	CCWGG	2 cut(s)	50, 292
PspGI	CCWGG	2 cut(s)	50, 292
PspN4I	GGNNCC	3 cut(s)	6, 49, 388
PspPI	GGNCC	4 cut(s)	67, 101, 387, 527
PspXI	VCTCGAGB	1 cut(s)	511
Rsr2I	CGGWCCG	1 cut(s)	101
RsrII	CGGWCCG	1 cut(s)	101
SaqAI	TTAA	6 cut(s)	141, 167, 198, 233, 431, 456
SatI	GCNGC	2 cut(s)	493, 517
Sau3AI	GATC	1 cut(s)	312
Sau96I	GGNCC	4 cut(s)	67, 101, 387, 527
ScrFI	CCNGG	2 cut(s)	52, 294
SetI	ASST	7 cut(s)	139, 167, 193, 255, 269, 295, 423
SexAI	ACCWGGT	1 cut(s)	292
Sfr274I	CTCGAG	1 cut(s)	511
SinI	GGWCC	3 cut(s)	67, 101, 387
SlaI	CTCGAG	1 cut(s)	511
SmlI	CTYRAG	4 cut(s)	81, 140, 461, 511
SmoI	CTYRAG	4 cut(s)	81, 140, 461, 511
Sse9I	AATT	6 cut(s)	234, 319, 435, 497, 535, 554
SsiI	CCGC	1 cut(s)	492
SspI	AATATT	2 cut(s)	196, 211
StyD4I	CCNGG	2 cut(s)	50, 292
TaaI	ACNGT	2 cut(s)	101, 379
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	3 cut(s)	19, 298, 512
TasI	AATT	6 cut(s)	234, 319, 435, 497, 535, 554
TauI	GCSGC	1 cut(s)	495
Tru1I	TTAA	6 cut(s)	141, 167, 198, 233, 431, 456
Tru9I	TTAA	6 cut(s)	141, 167, 198, 233, 431, 456
TscAI	CASTG	1 cut(s)	384
TseI	GCWGC	1 cut(s)	516
TspDTI	ATGAA	4 cut(s)	191, 236, 365, 563
TspRI	CASTG	1 cut(s)	384
Vha464I	CTTAAG	1 cut(s)	140
VpaK11BI	GGWCC	3 cut(s)	67, 101, 387
XapI	RAATTY	2 cut(s)	535, 554
XhoI	CTCGAG	1 cut(s)	511
XmnI	GAANNNNTTC	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.