Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003639

Physical Location & Seq

Genomic Coordinates Forward (+)

35619423 .. 35621252

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G404800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGAAAAGCTTGTGGTCATTGATGTTGGAAGGCTACCAGGTAGAACCTACAATGAGATTAAGAATGACTGGAACTCCCATTTGAGCAAAAAGATGAAGCAGAGAGAAAGACAAAACAGAGCAGTCTCAAAAGCAGAACAAGAGTCCTCTGACACAAAGAATATTAAGGTAATGGAGGTGAATGCTCTGACAATTGGAAGAGAAGATGTCTCCAAATGCAAGGATAGCTTCAAGTCTGGCTTTAATGAGATGAGTTTTTTGACTGCTCAAGTGATGAAGCGCCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0021700 GO:0022622 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045165 GO:0045893 GO:0045935 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071695 GO:0080090 GO:0090558 GO:0090627 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

96

Amino Acids

10.98

Weight (kDa)

9.67

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003639)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66380
fragaria_vesca	FvH4_2g31020 FvH4_2g31020 FvH4_5g19400 FvH4_5g19400 FvH4_5g19400
malus_domestica	MD04G1060200.v1.1 MD06G1053100.v1.1 MD15G1050300.v1.1
prunus_persica	Prupe.1G404700_v2.0.a1 Prupe.1G404800_v2.0.a1 Prupe.5G065500_v2.0.a1
pyrus_communis	pycom04g05380 pycom06g04480 pycom15g04870
rosa_chinensis	RchiOBHm_Chr6g0311771 RchiOBHm_Chr7g0203911
rosa_laevigata	RLG00000003500 RLG00000010375
rosa_multiflora	Rmu_sc0002888.1_g000040 Rmu_sc0014006.1_g000003 Rmu_sc0015961.1_g000001
rosa_roxburghii	Rroxscaffold_3G00253470 Rroxscaffold_7G00157320
rosa_rugosa	Rorug07G0079200.1 Rorug07G0079300
rosa_samantha	Rh6AG506900 Rh6BG517700 Rh6CG523300 Rh6DG509200 Rh7AG209200 Rh7CG221600 Rh7DG216200
rosa_wichuraiana	Rw6G044100 Rw7G018230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	37
AluBI	AGCT	2 cut(s)	10, 228
AluI	AGCT	2 cut(s)	10, 228
Alw26I	GTCTC	2 cut(s)	130, 214
AspLEI	GCGC	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	39
BcoDI	GTCTC	2 cut(s)	130, 214
BfoI	RGCGCY	1 cut(s)	283
Bme1390I	CCNGG	1 cut(s)	39
BmrFI	CCNGG	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	252
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bse1I	ACTGG	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	74
BsmAI	GTCTC	2 cut(s)	130, 214
BsmI	GAATGC	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	39
Bst6I	CTCTTC	1 cut(s)	193
BstH2I	RGCGCY	1 cut(s)	283
BstHHI	GCGC	1 cut(s)	282
BstMAI	GTCTC	2 cut(s)	130, 214
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	39
BstSCI	CCNGG	1 cut(s)	37
CfoI	GCGC	1 cut(s)	282
CsiI	ACCWGGT	1 cut(s)	37
CviJI	RGCY	4 cut(s)	10, 34, 228, 240
CviKI_1	RGCY	4 cut(s)	10, 34, 228, 240
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
EcoRII	CCWGG	1 cut(s)	37
FalI	AAGNNNNNCTT	4 cut(s)	212, 244, 224, 256
GlaI	GCGC	1 cut(s)	281
HaeII	RGCGCY	1 cut(s)	283
HhaI	GCGC	1 cut(s)	282
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	1 cut(s)	143
HphI	GGTGA	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	151, 189
HpyAV	CCTTC	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	219
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HspAI	GCGC	1 cut(s)	280
LpnPI	CCDG	4 cut(s)	24, 51, 55, 222
MabI	ACCWGGT	1 cut(s)	37
MboII	GAAGA	2 cut(s)	210, 215
MfeI	CAATTG	1 cut(s)	192
MluCI	AATT	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	7
MnlI	CCTC	2 cut(s)	157, 169
MseI	TTAA	3 cut(s)	60, 165, 243
MspR9I	CCNGG	1 cut(s)	39
MunI	CAATTG	1 cut(s)	192
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	225
PctI	GAATGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	151
PpsI	GAGTC	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
SaqAI	TTAA	3 cut(s)	60, 165, 243
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	1 cut(s)	39
SetI	ASST	6 cut(s)	12, 43, 50, 171, 180, 230
SexAI	ACCWGGT	1 cut(s)	37
SgeI	CNNG	9 cut(s)	23, 50, 51, 82, 152, 232, 244, 249, 281
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
Sse9I	AATT	1 cut(s)	192
SspI	AATATT	1 cut(s)	163
StyD4I	CCNGG	1 cut(s)	37
TasI	AATT	1 cut(s)	192
Tru1I	TTAA	3 cut(s)	60, 165, 243
Tru9I	TTAA	3 cut(s)	60, 165, 243
TspDTI	ATGAA	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.