AT1G66380
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000402
Physical Location & Seq
Forward (+)
24757298 .. 24758953
1656 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G66380.1

Sequence Viewer

Length: 420 bp
ATGGAGGGTTCGTCCAAAGGGTTGAGGAAAGGTGCATGGACTGCTGAAGAAGATAGTCTCTTGAGGCAGTGTATTGGTAAGTATGGAGAAGGCAAATGGCATCAAGTTCCTTTAAGAGCTGGGCTAAATCGGTGCAGGAAAAGTTGTAGACTAAGATGGTTAAACTATTTGAAGCCAAGTATCAAGAGAGGAAAATTTAGTTCTGATGAAGTTGATCTTCTTCTTCGTCTTCATAAGCTTCTAGGAAATAGGTGGTCCTTGATTGCTGGTCGATTACCTGGTCGGACCGCTAATGATGTCAAGAACTACTGGAACACCCATCTGAGTAAGAAGCATGAACCGTGTTGTAAAACTAAGATAAAAAGGATAAATATTATAACCCCTCCTAATACACCGGCCCAAAAAGTCGATATTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002239 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009628 GO:0009636 GO:0009651 GO:0009718 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009743 GO:0009744 GO:0009745 GO:0009753 GO:0009755 GO:0009756 GO:0009812 GO:0009813 GO:0009867 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010035 GO:0010182 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019430 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0032502 GO:0032870 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0042221 GO:0042440 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048518 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071395 GO:0071450 GO:0071451 GO:0071495 GO:0071704 GO:0072593 GO:0080090 GO:0080167 GO:0097159 GO:0097237 GO:0098754 GO:0098869 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1903506 GO:1990748 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

139

Amino Acids

16.01

Weight (kDa)

10.24

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 10 - 57 5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 13 - 71 2.8e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 63 - 108 3.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 66 - 119 2.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 377
AccI GTMKAC 1 cut(s) 148
AciI CCGC 1 cut(s) 288
AcsI RAATTY 1 cut(s) 194
AcuI CTGAAG 1 cut(s) 66
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 2 cut(s) 119, 238
AluI AGCT 2 cut(s) 119, 238
Alw26I GTCTC 1 cut(s) 62
AoxI GGCC 1 cut(s) 396
ApoI RAATTY 1 cut(s) 194
AspS9I GGNCC 3 cut(s) 255, 285, 397
AvaII GGWCC 2 cut(s) 255, 285
BbsI GAAGAC 1 cut(s) 221
BccI CCATC 2 cut(s) 150, 327
BciT130I CCWGG 1 cut(s) 279
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 2 cut(s) 255, 285
BmgT120I GGNCC 3 cut(s) 255, 285, 397
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 109
BpiI GAAGAC 1 cut(s) 221
BpuEI CTTGAG 1 cut(s) 82
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 314
BseBI CCWGG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 314
BseNI ACTGG 1 cut(s) 314
BseYI CCCAGC 1 cut(s) 119
BsgI GTGCAG 1 cut(s) 154
BshFI GGCC 1 cut(s) 398
BsiSI CCGG 1 cut(s) 395
BsmAI GTCTC 1 cut(s) 62
BsnI GGCC 1 cut(s) 398
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 1 cut(s) 288
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 394
BsrI ACTGG 1 cut(s) 314
BssAI RCCGGY 1 cut(s) 394
BssMI GATC 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 342
BstAPI GCANNNNNTGC 1 cut(s) 41
BstDEI CTNAG 3 cut(s) 152, 323, 354
BstKTI GATC 1 cut(s) 217
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 214
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 398
BtsI GCAGTG 1 cut(s) 74
BtsIMutI CAGTG 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 394
Cfr13I GGNCC 3 cut(s) 255, 285, 397
CpoI CGGWCCG 1 cut(s) 285
CsiI ACCWGGT 1 cut(s) 277
CspI CGGWCCG 1 cut(s) 285
CviAII CATG 2 cut(s) 36, 335
CviJI RGCY 5 cut(s) 119, 124, 175, 238, 398
CviKI_1 RGCY 5 cut(s) 119, 124, 175, 238, 398
DdeI CTNAG 3 cut(s) 152, 323, 354
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco47I GGWCC 2 cut(s) 255, 285
Eco57I CTGAAG 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 277
FaeI CATG 2 cut(s) 39, 338
FaiI YATR 5 cut(s) 37, 84, 234, 336, 377
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FatI CATG 2 cut(s) 35, 334
FblI GTMKAC 1 cut(s) 148
FspBI CTAG 1 cut(s) 242
GsaI CCCAGC 1 cut(s) 123
HaeIII GGCC 1 cut(s) 398
HapII CCGG 1 cut(s) 395
Hin1II CATG 2 cut(s) 39, 338
HindIII AAGCTT 1 cut(s) 236
HpaII CCGG 1 cut(s) 395
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 3 cut(s) 205, 285, 324
Hpy188III TCNNGA 3 cut(s) 61, 184, 301
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 83
HpyCH4III ACNGT 1 cut(s) 342
HpyCH4V TGCA 2 cut(s) 35, 135
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 3 cut(s) 152, 323, 354
Hsp92II CATG 2 cut(s) 39, 338
Kzo9I GATC 1 cut(s) 214
LpnPI CCDG 7 cut(s) 105, 121, 252, 264, 291, 295, 408
LweI GCATC 1 cut(s) 109
MabI ACCWGGT 1 cut(s) 277
MaeI CTAG 1 cut(s) 242
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MboII GAAGA 6 cut(s) 59, 62, 209, 212, 215, 221
MluCI AATT 1 cut(s) 194
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 4 cut(s) 18, 57, 182, 393
MseI TTAA 2 cut(s) 113, 161
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 1 cut(s) 214
NlaIII CATG 2 cut(s) 39, 338
PsiI TTATAA 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 119
PspGI CCWGG 1 cut(s) 277
PspPI GGNCC 3 cut(s) 255, 285, 397
Rsr2I CGGWCCG 1 cut(s) 285
RsrII CGGWCCG 1 cut(s) 285
SaqAI TTAA 2 cut(s) 113, 161
Sau3AI GATC 1 cut(s) 214
Sau96I GGNCC 3 cut(s) 255, 285, 397
ScrFI CCNGG 1 cut(s) 279
SetI ASST 5 cut(s) 34, 121, 240, 254, 280
SexAI ACCWGGT 1 cut(s) 277
SfaNI GCATC 1 cut(s) 109
SinI GGWCC 2 cut(s) 255, 285
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 1 cut(s) 194
SsiI CCGC 1 cut(s) 288
SspI AATATT 1 cut(s) 373
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 1 cut(s) 342
TaqI TCGA 2 cut(s) 271, 408
TasI AATT 1 cut(s) 194
Tru1I TTAA 2 cut(s) 113, 161
Tru9I TTAA 2 cut(s) 113, 161
TscAI CASTG 1 cut(s) 74
TspDTI ATGAA 3 cut(s) 221, 222, 351
TspRI CASTG 1 cut(s) 74
VpaK11BI GGWCC 2 cut(s) 255, 285
XapI RAATTY 1 cut(s) 194
XmiI GTMKAC 1 cut(s) 148
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.