RchiOBHm_Chr3g0448721
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000402
Physical Location & Seq
Reverse (-)
832001 .. 833322
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41614

Sequence Viewer

Length: 831 bp
ATGAAAATCCATATATATATAACATCAAACACTCACTGTAGAGATTCAACAACTCAAAATTGCAATATCAGAGAGAGAGAGATGGGTGGTATTCCCTGGACTAAGGAAGAGGATCAGTTGCTGAGGAAATGCATAGAGAAGTATGGAGAAGGCAAATGGCATCGAATTCCTCACTTAGCCGGTCTAAACAGGTGCCGTAAGAGCTGCAGGCTTCGGTGGCTAAACTACCTTCGGCCGAACATCAAGAGAGGGAGCTTTGAACAAGAGGAAGTTGAGCTCATCATCCAGCTCCAAAGGCTCTTGGGAAACAGGTGGTCATTAGTTGCAGCTAGGCTTCCGGGAAGGACTGGTAATGATGTGAAGAACTATTGGAATTGTCACTTGAGCAAAAAGCTAAATGCTCAAGAAACTCATGGTGATCATCAGAAGATTAATCATGCAGGGAATAATAATTTACAAGTCATAAGACCCCAAGCTTCAAAATACGCCAGCTCAAACTCAAAGAGGTCAATGATAAGTAGTACTCTTGAGGATCAAACTTGCCAAGCCTTGGAAGAATGTAGCAATGCATCAGTGGCAATGCTCTGCAATATTGATAAAGATCAGGGGCAGATCAGTCAGATAGTTGAGAGAGAGGATAGCAACAATCTATGTGTGGAAGAAGAACATGAGGGGAACAATGACTTCATGGGTGATTTGGGAATGGTAGACCTTGATCAATTTGAACAAGTTATAGAGCAATATGATCAAGAGTTCAACAACAAAAACAAGAAATGGGAGTGGGATGACTCCATCTTGGACATGGACCTTTGGGTTACTGATTCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

276

Amino Acids

32.13

Weight (kDa)

5.76

Isoelectric Point (pI)

52.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 32 - 77 2.9e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 33 - 92 6.3e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 83 - 127 3e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 87 - 134 4.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AccB7I CCANNNNNTGG 1 cut(s) 550
AccI GTMKAC 1 cut(s) 708
AclWI GGATC 2 cut(s) 120, 540
AcoI YGGCCR 1 cut(s) 233
AcsI RAATTY 1 cut(s) 165
AfaI GTAC 1 cut(s) 523
AfiI CCNNNNNNNGG 1 cut(s) 550
AgsI TTSAA 5 cut(s) 48, 260, 480, 725, 757
AjnI CCWGG 1 cut(s) 95
AluBI AGCT 8 cut(s) 204, 255, 277, 289, 329, 394, 476, 492
AluI AGCT 8 cut(s) 204, 255, 277, 289, 329, 394, 476, 492
Alw21I GWGCWC 1 cut(s) 279
AlwI GGATC 2 cut(s) 120, 540
AlwNI CAGNNNCTG 1 cut(s) 121
AoxI GGCC 1 cut(s) 233
ApeKI GCWGC 2 cut(s) 204, 326
ApoI RAATTY 1 cut(s) 165
AseI ATTAAT 1 cut(s) 432
AspS9I GGNCC 1 cut(s) 805
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 2 cut(s) 428, 704
AvaII GGWCC 1 cut(s) 805
BanI GGYRCC 1 cut(s) 192
BanII GRGCYC 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 279
BbvCI CCTCAGC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 191, 338
BccI CCATC 2 cut(s) 76, 800
BceAI ACGGC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 3 cut(s) 418, 715, 745
BcnI CCSGG 1 cut(s) 339
BfaI CTAG 1 cut(s) 330
BfmI CTRYAG 2 cut(s) 37, 205
BisI GCNGC 2 cut(s) 205, 327
BlsI GCNGC 2 cut(s) 206, 328
BmcAI AGTACT 1 cut(s) 523
Bme1390I CCNGG 2 cut(s) 97, 339
Bme18I GGWCC 1 cut(s) 805
BmgT120I GGNCC 1 cut(s) 805
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 2 cut(s) 97, 339
BmsI GCATC 2 cut(s) 169, 578
Bpu10I CCTNAGC 1 cut(s) 122
BpuEI CTTGAG 3 cut(s) 387, 403, 548
BpuMI CCSGG 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 600
BsaJI CCNNGG 2 cut(s) 95, 549
Bsc4I CCNNNNNNNGG 1 cut(s) 550
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 1 cut(s) 352
Bse3DI GCAATG 2 cut(s) 571, 585
Bse8I GATNNNNATC 1 cut(s) 600
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 2 cut(s) 95, 549
BseGI GGATG 2 cut(s) 282, 790
BseJI GATNNNNATC 1 cut(s) 600
BseLI CCNNNNNNNGG 1 cut(s) 550
BseMI GCAATG 2 cut(s) 571, 585
BseMII CTCAG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 352
BseX3I CGGCCG 1 cut(s) 233
BseXI GCAGC 2 cut(s) 191, 338
Bsh1285I CGRYCG 1 cut(s) 236
BshFI GGCC 1 cut(s) 235
BshNI GGYRCC 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 279
BsiSI CCGG 2 cut(s) 180, 338
BslI CCNNNNNNNGG 1 cut(s) 550
BsnI GGCC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 7 cut(s) 112, 418, 532, 601, 612, 715, 745
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 114
BspLI GGNNCC 1 cut(s) 194
BspMAI CTGCAG 1 cut(s) 209
BspPI GGATC 2 cut(s) 120, 540
BspT107I GGYRCC 1 cut(s) 192
BsrDI GCAATG 2 cut(s) 571, 585
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 2 cut(s) 95, 549
BssMI GATC 7 cut(s) 112, 418, 532, 601, 612, 715, 745
BssT1I CCWWGG 1 cut(s) 549
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 38
Bst6I CTCTTC 1 cut(s) 102
BstC8I GCNNGC 2 cut(s) 209, 490
BstDEI CTNAG 3 cut(s) 102, 122, 175
BstF5I GGATG 2 cut(s) 282, 790
BstKTI GATC 7 cut(s) 115, 421, 535, 604, 615, 718, 748
BstMBI GATC 7 cut(s) 112, 418, 532, 601, 612, 715, 745
BstMCI CGRYCG 1 cut(s) 236
BstMWI GCNNNNNNNGC 4 cut(s) 201, 217, 295, 575
BstNI CCWGG 1 cut(s) 97
BstSCI CCNGG 2 cut(s) 95, 337
BstSFI CTRYAG 2 cut(s) 37, 205
BstV1I GCAGC 2 cut(s) 191, 338
BstZI CGGCCG 1 cut(s) 233
BsuRI GGCC 1 cut(s) 235
BtsCI GGATG 2 cut(s) 282, 790
BtsIMutI CAGTG 2 cut(s) 34, 579
Cac8I GCNNGC 2 cut(s) 209, 490
CaiI CAGNNNCTG 1 cut(s) 121
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 805
Csp6I GTAC 1 cut(s) 522
CviAII CATG 5 cut(s) 413, 437, 668, 688, 802
CviQI GTAC 1 cut(s) 522
DdeI CTNAG 3 cut(s) 102, 122, 175
DpnI GATC 7 cut(s) 114, 420, 534, 603, 614, 717, 747
DpnII GATC 7 cut(s) 112, 418, 532, 601, 612, 715, 745
EaeI YGGCCR 1 cut(s) 233
EagI CGGCCG 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Ecl136II GAGCTC 1 cut(s) 277
EclXI CGGCCG 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 279
Eco47I GGWCC 1 cut(s) 805
Eco52I CGGCCG 1 cut(s) 233
Eco53kI GAGCTC 1 cut(s) 277
EcoICRI GAGCTC 1 cut(s) 277
EcoRI GAATTC 1 cut(s) 165
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 549
EcoT22I ATGCAT 2 cut(s) 134, 571
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 549
FaeI CATG 5 cut(s) 416, 440, 671, 691, 805
FatI CATG 5 cut(s) 412, 436, 667, 687, 801
FbaI TGATCA 3 cut(s) 418, 715, 745
FblI GTMKAC 1 cut(s) 708
Fnu4HI GCNGC 2 cut(s) 205, 327
FokI GGATG 2 cut(s) 269, 797
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 2 cut(s) 205, 327
FspBI CTAG 1 cut(s) 330
GluI GCNGC 2 cut(s) 205, 327
HaeIII GGCC 1 cut(s) 235
HapII CCGG 2 cut(s) 180, 338
Hin1II CATG 5 cut(s) 416, 440, 671, 691, 805
HindIII AAGCTT 1 cut(s) 474
HinfI GANTC 3 cut(s) 44, 788, 821
HpaII CCGG 2 cut(s) 180, 338
HphI GGTGA 2 cut(s) 428, 704
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 3 cut(s) 71, 426, 621
Hpy188III TCNNGA 4 cut(s) 244, 404, 527, 749
Hpy8I GTNNAC 1 cut(s) 709
HpyAV CCTTC 3 cut(s) 143, 239, 336
HpyCH4III ACNGT 1 cut(s) 38
HpyCH4V TGCA 7 cut(s) 63, 132, 207, 326, 440, 569, 588
HpyF10VI GCNNNNNNNGC 4 cut(s) 201, 217, 295, 575
HpyF3I CTNAG 3 cut(s) 102, 122, 175
Hsp92II CATG 5 cut(s) 416, 440, 671, 691, 805
Ksp22I TGATCA 3 cut(s) 418, 715, 745
Kzo9I GATC 7 cut(s) 112, 418, 532, 601, 612, 715, 745
LmnI GCTCC 2 cut(s) 252, 294
Lsp1109I GCAGC 2 cut(s) 191, 338
LweI GCATC 2 cut(s) 169, 578
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 377, 814
MalI GATC 7 cut(s) 114, 420, 534, 603, 614, 717, 747
MboI GATC 7 cut(s) 112, 418, 532, 601, 612, 715, 745
MboII GAAGA 7 cut(s) 119, 373, 439, 566, 671, 674, 816
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 5 cut(s) 58, 165, 373, 451, 719
MlyI GAGTC 1 cut(s) 782
MnlI CCTC 9 cut(s) 103, 117, 180, 242, 259, 498, 523, 628, 664
Mph1103I ATGCAT 2 cut(s) 134, 571
MseI TTAA 2 cut(s) 432, 829
MspI CCGG 2 cut(s) 180, 338
MspR9I CCNGG 2 cut(s) 97, 339
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 4 cut(s) 201, 217, 295, 575
NciI CCSGG 1 cut(s) 339
NdeII GATC 7 cut(s) 112, 418, 532, 601, 612, 715, 745
NlaIII CATG 5 cut(s) 416, 440, 671, 691, 805
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 377
NsiI ATGCAT 2 cut(s) 134, 571
PfeI GAWTC 2 cut(s) 44, 821
PflMI CCANNNNNTGG 1 cut(s) 550
PfoI TCCNGGA 1 cut(s) 337
PkrI GCNGC 2 cut(s) 206, 328
PleI GAGTC 1 cut(s) 782
PpsI GAGTC 1 cut(s) 782
PshBI ATTAAT 1 cut(s) 432
Psp124BI GAGCTC 1 cut(s) 279
Psp6I CCWGG 1 cut(s) 95
PspGI CCWGG 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 194
PspPI GGNCC 1 cut(s) 805
PstI CTGCAG 1 cut(s) 209
PstNI CAGNNNCTG 1 cut(s) 121
RsaI GTAC 1 cut(s) 523
RsaNI GTAC 1 cut(s) 522
SacI GAGCTC 1 cut(s) 279
SaqAI TTAA 2 cut(s) 432, 829
SatI GCNGC 2 cut(s) 205, 327
Sau3AI GATC 7 cut(s) 112, 418, 532, 601, 612, 715, 745
Sau96I GGNCC 1 cut(s) 805
ScaI AGTACT 1 cut(s) 523
SchI GAGTC 1 cut(s) 782
ScrFI CCNGG 2 cut(s) 97, 339
SduI GDGCHC 1 cut(s) 279
SfaNI GCATC 2 cut(s) 169, 578
SfcI CTRYAG 2 cut(s) 37, 205
SinI GGWCC 1 cut(s) 805
SmlI CTYRAG 3 cut(s) 382, 402, 527
SmoI CTYRAG 3 cut(s) 382, 402, 527
Sse9I AATT 5 cut(s) 58, 165, 373, 451, 719
SspI AATATT 1 cut(s) 592
SspMI CTAG 1 cut(s) 330
SstI GAGCTC 1 cut(s) 279
StyD4I CCNGG 2 cut(s) 95, 337
StyI CCWWGG 1 cut(s) 549
TaaI ACNGT 1 cut(s) 38
TaqI TCGA 1 cut(s) 163
TasI AATT 5 cut(s) 58, 165, 373, 451, 719
TatI WGTACW 1 cut(s) 521
TfiI GAWTC 2 cut(s) 44, 821
Tru1I TTAA 2 cut(s) 432, 829
Tru9I TTAA 2 cut(s) 432, 829
TscAI CASTG 2 cut(s) 41, 579
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 2 cut(s) 204, 326
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 2 cut(s) 17, 676
TspRI CASTG 2 cut(s) 41, 579
Van91I CCANNNNNTGG 1 cut(s) 550
VpaK11BI GGWCC 1 cut(s) 805
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 1 cut(s) 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 799
XmiI GTMKAC 1 cut(s) 708
XspI CTAG 1 cut(s) 330
ZrmI AGTACT 1 cut(s) 523
Zsp2I ATGCAT 2 cut(s) 134, 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.