Rroxscaffold_2G00128380
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000402
Physical Location & Seq
Forward (+)
64157585 .. 64163957
6373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00128380.1

Sequence Viewer

Length: 999 bp
ATGGATCGGTGGTGGTGGCGGATTGTGCGGAGGTTCCGTCGACGGTGCTTGCAAAACTTGGTGCTAGGCATAGGCTGCCTTGGCTTCCTGCGGGCCGATGTCTTTGGGCTCCTTATTTTGGGCCCTCTAGGCGGGGGGCTTCACAAGGGTGGAGGTGAAAGTGGGATGGTCTTCAACGATCGACGAGTTGGGCTAACTCCAAGCGGGGCTGACTTTGGTCTATATCTTTGGTGTGGGTTTAGCTGGAATGGGGATCTAGTGGCCACTTACTTAGCAATTAGCTTAATTTTCATGGAGGGTTTCGGCGTGAGAAAAGGTGCATGGACTAAAGAGGAAGATGAACTTCTGAGACAGGTCATCGAAAAGCATGGAGAAGGAAAATGGCATCAGGTTCCTTTCAAAGCAGGCTTAAACAGATGCAGGAAGAGCTGTAGACTGAGGTGGCTAAATTATTTGAAGCCAACTATCAAGAGAGGAGAGTTTACAGTTGATGAAGTTGATATGATCATCAGACTTCATAAGCTTCTAGGAAACAGGTGGTCTTTAATTGCTGGAAGACTACCGGGAAGAACAGCCAACGATGTAAAGAACTATTGGAATACTTATCAACGGAAAAAGAATCAAAAGATGACTTCAGACGCAAAAAAAATGAAAGATAAATCCCAGAAAATCACAAACGCCCCCTTGGTTGTAAGACCTCGACCACGAACCTTCATCAAAAGGTTGAATTTTTCGGAAAGAGGTGCCAATTTAGAGCATATTCATTCAGAAGAGAATTCTACCACTTGTTTATTACCAACAGCACCGCCACAAACTCTAGAATTAGAGAATGTAATTGATTGGTGGAAAGTTGTATCAGAAGACAGTACAGGAAGCATTGATAGAACATGTTCTAGTTTTGGTTTAGAGGACGACTTCTTCACGAACTTCTGGGTTGAAGATTTGGTACAATTGTCCAGTATAGATGGCCATGATCTAGTCAACAGCTTCTACGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

332

Amino Acids

38.16

Weight (kDa)

9.44

Isoelectric Point (pI)

44.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 105 - 152 3.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 108 - 166 4.4e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 158 - 202 6.4e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 161 - 205 6.8e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 743
AccI GTMKAC 2 cut(s) 40, 433
AciI CCGC 6 cut(s) 19, 28, 91, 132, 204, 806
AclWI GGATC 2 cut(s) 12, 261
AcoI YGGCCR 2 cut(s) 261, 967
AcsI RAATTY 2 cut(s) 727, 775
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 2 cut(s) 868, 948
AfiI CCNNNNNNNGG 2 cut(s) 118, 131
AflIII ACRYGT 1 cut(s) 887
AgsI TTSAA 5 cut(s) 175, 400, 457, 727, 938
AleI CACNNNNGTG 1 cut(s) 147
AluBI AGCT 5 cut(s) 243, 282, 429, 523, 987
AluI AGCT 5 cut(s) 243, 282, 429, 523, 987
Alw26I GTCTC 1 cut(s) 343
AlwI GGATC 2 cut(s) 12, 261
AoxI GGCC 4 cut(s) 93, 121, 261, 967
ApaI GGGCCC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 75
ApoI RAATTY 2 cut(s) 727, 775
Asp700I GAANNNNTTC 1 cut(s) 889
AspS9I GGNCC 3 cut(s) 93, 121, 122
AsuC2I CCSGG 1 cut(s) 564
AsuHPI GGTGA 1 cut(s) 167
BaeGI GKGCMC 1 cut(s) 125
BaeI ACNNNNGTAYC 2 cut(s) 938, 971
BalI TGGCCA 2 cut(s) 263, 969
BanI GGYRCC 1 cut(s) 743
BanII GRGCYC 2 cut(s) 111, 125
BarI GAAGNNNNNNTAC 2 cut(s) 930, 962
BbsI GAAGAC 3 cut(s) 163, 562, 867
BbvI GCAGC 1 cut(s) 62
BccI CCATC 2 cut(s) 160, 959
BclI TGATCA 1 cut(s) 504
BcnI CCSGG 1 cut(s) 564
BcoDI GTCTC 1 cut(s) 343
BfaI CTAG 7 cut(s) 65, 128, 257, 527, 818, 894, 977
BfmI CTRYAG 1 cut(s) 430
BglI GCCNNNNNGGC 1 cut(s) 129
BisI GCNGC 1 cut(s) 76
BlsI GCNGC 1 cut(s) 77
Bme1390I CCNGG 1 cut(s) 564
BmgT120I GGNCC 3 cut(s) 93, 121, 122
BmiI GGNNCC 5 cut(s) 35, 110, 123, 393, 745
BmrFI CCNGG 1 cut(s) 564
BmsI GCATC 2 cut(s) 394, 407
BoxI GACNNNNGTC 1 cut(s) 216
BpiI GAAGAC 3 cut(s) 163, 562, 867
BpuMI CCSGG 1 cut(s) 564
BsaJI CCNNGG 2 cut(s) 79, 684
BsaXI ACNNNNNCTCC 2 cut(s) 22, 52
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 131
Bse1I ACTGG 1 cut(s) 957
BseDI CCNNGG 2 cut(s) 79, 684
BseGI GGATG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 118, 131
BseMII CTCAG 2 cut(s) 338, 428
BseNI ACTGG 1 cut(s) 957
BseRI GAGGAG 1 cut(s) 489
BseSI GKGCMC 1 cut(s) 125
BseXI GCAGC 1 cut(s) 62
Bsh1285I CGRYCG 1 cut(s) 181
BshFI GGCC 4 cut(s) 95, 123, 263, 969
BshNI GGYRCC 1 cut(s) 743
BsiEI CGRYCG 1 cut(s) 181
BsiSI CCGG 1 cut(s) 563
BslI CCNNNNNNNGG 2 cut(s) 118, 131
BsmAI GTCTC 1 cut(s) 343
BsnI GGCC 4 cut(s) 95, 123, 263, 969
Bsp120I GGGCCC 1 cut(s) 121
Bsp1286I GDGCHC 2 cut(s) 111, 125
Bsp143I GATC 5 cut(s) 4, 178, 253, 504, 973
BspACI CCGC 6 cut(s) 19, 28, 91, 132, 204, 806
BspANI GGCC 4 cut(s) 95, 123, 263, 969
BspCNI CTCAG 2 cut(s) 339, 429
BspLI GGNNCC 5 cut(s) 35, 110, 123, 393, 745
BspPI GGATC 2 cut(s) 12, 261
BspQI GCTCTTC 1 cut(s) 419
BspT107I GGYRCC 1 cut(s) 743
BsrI ACTGG 1 cut(s) 957
BssECI CCNNGG 2 cut(s) 79, 684
BssMI GATC 5 cut(s) 4, 178, 253, 504, 973
BssT1I CCWWGG 2 cut(s) 79, 684
Bst4CI ACNGT 3 cut(s) 45, 487, 866
Bst6I CTCTTC 2 cut(s) 419, 765
BstAPI GCANNNNNTGC 1 cut(s) 75
BstC8I GCNNGC 3 cut(s) 50, 93, 406
BstDEI CTNAG 3 cut(s) 271, 347, 437
BstF5I GGATG 1 cut(s) 171
BstKTI GATC 5 cut(s) 7, 181, 256, 507, 976
BstMAI GTCTC 1 cut(s) 343
BstMBI GATC 5 cut(s) 4, 178, 253, 504, 973
BstMCI CGRYCG 1 cut(s) 181
BstMWI GCNNNNNNNGC 5 cut(s) 25, 75, 81, 129, 426
BstNSI RCATGY 1 cut(s) 891
BstPAI GACNNNNGTC 1 cut(s) 216
BstSCI CCNGG 1 cut(s) 562
BstSFI CTRYAG 1 cut(s) 430
BstSLI GKGCMC 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 3 cut(s) 163, 562, 867
BstX2I RGATCY 1 cut(s) 253
BstYI RGATCY 1 cut(s) 253
BsuRI GGCC 4 cut(s) 95, 123, 263, 969
BtsCI GGATG 1 cut(s) 171
Cac8I GCNNGC 3 cut(s) 50, 93, 406
Cfr13I GGNCC 3 cut(s) 93, 121, 122
CseI GACGC 1 cut(s) 647
Csp6I GTAC 2 cut(s) 867, 947
CviAII CATG 6 cut(s) 292, 321, 368, 888, 971, 996
CviQI GTAC 2 cut(s) 867, 947
DdeI CTNAG 3 cut(s) 271, 347, 437
DpnI GATC 5 cut(s) 6, 180, 255, 506, 975
DpnII GATC 5 cut(s) 4, 178, 253, 504, 973
EaeI YGGCCR 2 cut(s) 261, 967
Eam1104I CTCTTC 2 cut(s) 419, 765
EarI CTCTTC 2 cut(s) 419, 765
EciI GGCGGA 1 cut(s) 34
Eco130I CCWWGG 2 cut(s) 79, 684
Eco24I GRGCYC 2 cut(s) 111, 125
Eco57I CTGAAG 1 cut(s) 618
EcoO109I RGGNCCY 1 cut(s) 122
EcoRI GAATTC 1 cut(s) 775
EcoT14I CCWWGG 2 cut(s) 79, 684
EcoT38I GRGCYC 2 cut(s) 111, 125
ErhI CCWWGG 2 cut(s) 79, 684
FaeI CATG 6 cut(s) 295, 324, 371, 891, 974, 999
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FatI CATG 6 cut(s) 291, 320, 367, 887, 970, 995
FauI CCCGC 3 cut(s) 84, 125, 197
FbaI TGATCA 1 cut(s) 504
FblI GTMKAC 2 cut(s) 40, 433
Fnu4HI GCNGC 1 cut(s) 76
FokI GGATG 1 cut(s) 178
FriOI GRGCYC 2 cut(s) 111, 125
Fsp4HI GCNGC 1 cut(s) 76
FspBI CTAG 7 cut(s) 65, 128, 257, 527, 818, 894, 977
GluI GCNGC 1 cut(s) 76
HaeIII GGCC 4 cut(s) 95, 123, 263, 969
HapII CCGG 1 cut(s) 563
HgaI GACGC 1 cut(s) 647
Hin1II CATG 6 cut(s) 295, 324, 371, 891, 974, 999
HincII GTYRAC 2 cut(s) 41, 982
HindII GTYRAC 2 cut(s) 41, 982
HindIII AAGCTT 1 cut(s) 521
HinfI GANTC 1 cut(s) 619
HpaII CCGG 1 cut(s) 563
HphI GGTGA 1 cut(s) 167
Hpy166II GTNNAC 4 cut(s) 41, 434, 483, 982
Hpy188I TCNGA 6 cut(s) 348, 512, 637, 736, 769, 859
Hpy188III TCNNGA 3 cut(s) 469, 818, 922
Hpy8I GTNNAC 4 cut(s) 41, 434, 483, 982
Hpy99I CGWCG 3 cut(s) 42, 45, 186
HpyAV CCTTC 2 cut(s) 368, 721
HpyCH4III ACNGT 3 cut(s) 45, 487, 866
HpyCH4V TGCA 3 cut(s) 52, 320, 420
HpyF10VI GCNNNNNNNGC 5 cut(s) 25, 75, 81, 129, 426
HpyF3I CTNAG 3 cut(s) 271, 347, 437
Hsp92II CATG 6 cut(s) 295, 324, 371, 891, 974, 999
Ksp22I TGATCA 1 cut(s) 504
Kzo9I GATC 5 cut(s) 4, 178, 253, 504, 973
LguI GCTCTTC 1 cut(s) 419
LmnI GCTCC 1 cut(s) 114
Lsp1109I GCAGC 1 cut(s) 62
LweI GCATC 2 cut(s) 394, 407
MaeI CTAG 7 cut(s) 65, 128, 257, 527, 818, 894, 977
MalI GATC 5 cut(s) 6, 180, 255, 506, 975
MboI GATC 5 cut(s) 4, 178, 253, 504, 973
MboII GAAGA 9 cut(s) 163, 347, 436, 567, 579, 782, 872, 910, 950
MfeI CAATTG 1 cut(s) 950
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 2 cut(s) 111, 125
MlsI TGGCCA 2 cut(s) 263, 969
MluNI TGGCCA 2 cut(s) 263, 969
Mox20I TGGCCA 2 cut(s) 263, 969
MroXI GAANNNNTTC 1 cut(s) 889
MscI TGGCCA 2 cut(s) 263, 969
MseI TTAA 3 cut(s) 284, 410, 545
MslI CAYNNNNRTG 1 cut(s) 147
Msp20I TGGCCA 2 cut(s) 263, 969
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 1 cut(s) 564
MunI CAATTG 1 cut(s) 950
MwoI GCNNNNNNNGC 5 cut(s) 25, 75, 81, 129, 426
NciI CCSGG 1 cut(s) 564
NdeII GATC 5 cut(s) 4, 178, 253, 504, 973
NlaIII CATG 6 cut(s) 295, 324, 371, 891, 974, 999
NlaIV GGNNCC 5 cut(s) 35, 110, 123, 393, 745
NspI RCATGY 1 cut(s) 891
OliI CACNNNNGTG 1 cut(s) 147
PciI ACATGT 1 cut(s) 887
PciSI GCTCTTC 1 cut(s) 419
PdmI GAANNNNTTC 1 cut(s) 889
PfeI GAWTC 1 cut(s) 619
PkrI GCNGC 1 cut(s) 77
Ple19I CGATCG 1 cut(s) 181
PscI ACATGT 1 cut(s) 887
PshAI GACNNNNGTC 1 cut(s) 216
PspN4I GGNNCC 5 cut(s) 35, 110, 123, 393, 745
PspOMI GGGCCC 1 cut(s) 121
PspPI GGNCC 3 cut(s) 93, 121, 122
PsuI RGATCY 1 cut(s) 253
PvuI CGATCG 1 cut(s) 181
RsaI GTAC 2 cut(s) 868, 948
RsaNI GTAC 2 cut(s) 867, 947
RseI CAYNNNNRTG 1 cut(s) 147
SalI GTCGAC 1 cut(s) 39
SapI GCTCTTC 1 cut(s) 419
SaqAI TTAA 3 cut(s) 284, 410, 545
SatI GCNGC 1 cut(s) 76
Sau3AI GATC 5 cut(s) 4, 178, 253, 504, 973
Sau96I GGNCC 3 cut(s) 93, 121, 122
ScrFI CCNGG 1 cut(s) 564
SduI GDGCHC 2 cut(s) 111, 125
SfaNI GCATC 2 cut(s) 394, 407
SfcI CTRYAG 1 cut(s) 430
SgrDI CGTCGACG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 147
SsiI CCGC 6 cut(s) 19, 28, 91, 132, 204, 806
SspMI CTAG 7 cut(s) 65, 128, 257, 527, 818, 894, 977
StyD4I CCNGG 1 cut(s) 562
StyI CCWWGG 2 cut(s) 79, 684
TaaI ACNGT 3 cut(s) 45, 487, 866
TaqI TCGA 4 cut(s) 40, 181, 360, 700
TatI WGTACW 1 cut(s) 866
TfiI GAWTC 1 cut(s) 619
Tru1I TTAA 3 cut(s) 284, 410, 545
Tru9I TTAA 3 cut(s) 284, 410, 545
TseI GCWGC 1 cut(s) 75
TspDTI ATGAA 7 cut(s) 280, 354, 506, 507, 665, 703, 752
TspGWI ACGGA 2 cut(s) 26, 625
XapI RAATTY 2 cut(s) 727, 775
XbaI TCTAGA 1 cut(s) 817
XceI RCATGY 1 cut(s) 891
XmiI GTMKAC 2 cut(s) 40, 433
XmnI GAANNNNTTC 1 cut(s) 889
XspI CTAG 7 cut(s) 65, 128, 257, 527, 818, 894, 977
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.