Transcription factor
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 11, 78 |
| AccBSI | CCGCTC | 1 cut(s) | 168 |
| AccII | CGCG | 1 cut(s) | 93 |
| AciI | CCGC | 1 cut(s) | 168 |
| AcsI | RAATTY | 1 cut(s) | 598 |
| AcuI | CTGAAG | 2 cut(s) | 194, 429 |
| AfaI | GTAC | 1 cut(s) | 50 |
| AgsI | TTSAA | 4 cut(s) | 56, 142, 151, 566 |
| AhlI | ACTAGT | 1 cut(s) | 521 |
| AjnI | CCWGG | 3 cut(s) | 14, 81, 256 |
| AleI | CACNNNNGTG | 1 cut(s) | 624 |
| AluBI | AGCT | 1 cut(s) | 123 |
| AluI | AGCT | 1 cut(s) | 123 |
| ApeKI | GCWGC | 1 cut(s) | 123 |
| ApoI | RAATTY | 1 cut(s) | 598 |
| AsuHPI | GGTGA | 1 cut(s) | 435 |
| BanI | GGYRCC | 2 cut(s) | 11, 78 |
| BbsI | GAAGAC | 3 cut(s) | 256, 482, 546 |
| BbvI | GCAGC | 1 cut(s) | 110 |
| BccI | CCATC | 2 cut(s) | 62, 500 |
| BciT130I | CCWGG | 3 cut(s) | 16, 83, 258 |
| BcuI | ACTAGT | 1 cut(s) | 521 |
| BfaI | CTAG | 3 cut(s) | 387, 522, 662 |
| BfmI | CTRYAG | 3 cut(s) | 124, 418, 450 |
| BglII | AGATCT | 1 cut(s) | 193 |
| BisI | GCNGC | 1 cut(s) | 124 |
| BlsI | GCNGC | 1 cut(s) | 125 |
| Bme1390I | CCNGG | 3 cut(s) | 16, 83, 258 |
| BmiI | GGNNCC | 3 cut(s) | 13, 80, 87 |
| BmrFI | CCNGG | 3 cut(s) | 16, 83, 258 |
| BmsI | GCATC | 1 cut(s) | 101 |
| BpiI | GAAGAC | 3 cut(s) | 256, 482, 546 |
| BpuEI | CTTGAG | 1 cut(s) | 146 |
| BsaJI | CCNNGG | 2 cut(s) | 256, 377 |
| BseBI | CCWGG | 3 cut(s) | 16, 83, 258 |
| BseDI | CCNNGG | 2 cut(s) | 256, 377 |
| BseGI | GGATG | 2 cut(s) | 190, 356 |
| BseMII | CTCAG | 2 cut(s) | 32, 122 |
| BseXI | GCAGC | 1 cut(s) | 110 |
| Bsh1236I | CGCG | 1 cut(s) | 93 |
| BshNI | GGYRCC | 2 cut(s) | 11, 78 |
| Bsp143I | GATC | 1 cut(s) | 193 |
| Bsp68I | TCGCGA | 1 cut(s) | 93 |
| BspACI | CCGC | 1 cut(s) | 168 |
| BspCNI | CTCAG | 2 cut(s) | 33, 123 |
| BspFNI | CGCG | 1 cut(s) | 93 |
| BspLI | GGNNCC | 3 cut(s) | 13, 80, 87 |
| BspMAI | CTGCAG | 1 cut(s) | 128 |
| BspT107I | GGYRCC | 2 cut(s) | 11, 78 |
| BsrBI | CCGCTC | 1 cut(s) | 168 |
| BssECI | CCNNGG | 2 cut(s) | 256, 377 |
| BssMI | GATC | 1 cut(s) | 193 |
| Bst2UI | CCWGG | 3 cut(s) | 16, 83, 258 |
| Bst4CI | ACNGT | 2 cut(s) | 419, 589 |
| Bst6I | CTCTTC | 3 cut(s) | 405, 551, 663 |
| BstC8I | GCNNGC | 2 cut(s) | 271, 299 |
| BstDEI | CTNAG | 3 cut(s) | 41, 131, 678 |
| BstDSI | CCRYGG | 1 cut(s) | 377 |
| BstF5I | GGATG | 2 cut(s) | 190, 356 |
| BstFNI | CGCG | 1 cut(s) | 93 |
| BstKTI | GATC | 1 cut(s) | 196 |
| BstMBI | GATC | 1 cut(s) | 193 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 120, 392 |
| BstNI | CCWGG | 3 cut(s) | 16, 83, 258 |
| BstSCI | CCNGG | 3 cut(s) | 14, 81, 256 |
| BstSFI | CTRYAG | 3 cut(s) | 124, 418, 450 |
| BstUI | CGCG | 1 cut(s) | 93 |
| BstV1I | GCAGC | 1 cut(s) | 110 |
| BstV2I | GAAGAC | 3 cut(s) | 256, 482, 546 |
| BstX2I | RGATCY | 1 cut(s) | 193 |
| BstYI | RGATCY | 1 cut(s) | 193 |
| BtgI | CCRYGG | 1 cut(s) | 377 |
| BtsCI | GGATG | 2 cut(s) | 190, 356 |
| BtuMI | TCGCGA | 1 cut(s) | 93 |
| Cac8I | GCNNGC | 2 cut(s) | 271, 299 |
| CsiI | ACCWGGT | 1 cut(s) | 81 |
| Csp6I | GTAC | 1 cut(s) | 49 |
| CviAII | CATG | 6 cut(s) | 62, 471, 481, 488, 595, 622 |
| CviJI | RGCY | 3 cut(s) | 123, 154, 386 |
| CviKI_1 | RGCY | 3 cut(s) | 123, 154, 386 |
| CviQI | GTAC | 1 cut(s) | 49 |
| DdeI | CTNAG | 3 cut(s) | 41, 131, 678 |
| DpnI | GATC | 1 cut(s) | 195 |
| DpnII | GATC | 1 cut(s) | 193 |
| DraI | TTTAAA | 1 cut(s) | 402 |
| Eam1104I | CTCTTC | 3 cut(s) | 405, 551, 663 |
| EarI | CTCTTC | 3 cut(s) | 405, 551, 663 |
| Eco57I | CTGAAG | 2 cut(s) | 194, 429 |
| EcoRI | GAATTC | 1 cut(s) | 598 |
| EcoRII | CCWGG | 3 cut(s) | 14, 81, 256 |
| FaeI | CATG | 6 cut(s) | 65, 474, 484, 491, 598, 625 |
| FatI | CATG | 6 cut(s) | 61, 470, 480, 487, 594, 621 |
| Fnu4HI | GCNGC | 1 cut(s) | 124 |
| FokI | GGATG | 2 cut(s) | 197, 343 |
| Fsp4HI | GCNGC | 1 cut(s) | 124 |
| FspBI | CTAG | 3 cut(s) | 387, 522, 662 |
| GluI | GCNGC | 1 cut(s) | 124 |
| Hin1II | CATG | 6 cut(s) | 65, 474, 484, 491, 598, 625 |
| HinfI | GANTC | 5 cut(s) | 19, 157, 252, 467, 658 |
| HphI | GGTGA | 1 cut(s) | 435 |
| Hpy188I | TCNGA | 3 cut(s) | 42, 213, 409 |
| Hpy188III | TCNNGA | 3 cut(s) | 92, 163, 662 |
| HpyAV | CCTTC | 2 cut(s) | 319, 605 |
| HpyCH4III | ACNGT | 2 cut(s) | 419, 589 |
| HpyCH4IV | ACGT | 1 cut(s) | 51 |
| HpyCH4V | TGCA | 5 cut(s) | 114, 126, 395, 487, 575 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 120, 392 |
| HpyF3I | CTNAG | 3 cut(s) | 41, 131, 678 |
| HpySE526I | ACGT | 1 cut(s) | 51 |
| Hsp92II | CATG | 6 cut(s) | 65, 474, 484, 491, 598, 625 |
| Kzo9I | GATC | 1 cut(s) | 193 |
| Lsp1109I | GCAGC | 1 cut(s) | 110 |
| LweI | GCATC | 1 cut(s) | 101 |
| MabI | ACCWGGT | 1 cut(s) | 81 |
| MaeI | CTAG | 3 cut(s) | 387, 522, 662 |
| MaeII | ACGT | 1 cut(s) | 51 |
| MaeIII | GTNAC | 2 cut(s) | 352, 615 |
| MalI | GATC | 1 cut(s) | 195 |
| MbiI | CCGCTC | 1 cut(s) | 168 |
| MboI | GATC | 1 cut(s) | 193 |
| MflI | RGATCY | 1 cut(s) | 193 |
| MluCI | AATT | 3 cut(s) | 240, 283, 598 |
| MlyI | GAGTC | 2 cut(s) | 13, 246 |
| MmeI | TCCRAC | 1 cut(s) | 294 |
| MnlI | CCTC | 7 cut(s) | 36, 99, 126, 175, 375, 381, 554 |
| MseI | TTAA | 1 cut(s) | 401 |
| MslI | CAYNNNNRTG | 2 cut(s) | 66, 624 |
| MspR9I | CCNGG | 3 cut(s) | 16, 83, 258 |
| MvaI | CCWGG | 3 cut(s) | 16, 83, 258 |
| MvnI | CGCG | 1 cut(s) | 93 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 120, 392 |
| NdeII | GATC | 1 cut(s) | 193 |
| NlaIII | CATG | 6 cut(s) | 65, 474, 484, 491, 598, 625 |
| NlaIV | GGNNCC | 3 cut(s) | 13, 80, 87 |
| NmuCI | GTSAC | 1 cut(s) | 352 |
| NruI | TCGCGA | 1 cut(s) | 93 |
| OliI | CACNNNNGTG | 1 cut(s) | 624 |
| PfeI | GAWTC | 3 cut(s) | 157, 467, 658 |
| PkrI | GCNGC | 1 cut(s) | 125 |
| PleI | GAGTC | 2 cut(s) | 13, 246 |
| PpsI | GAGTC | 2 cut(s) | 13, 246 |
| Psp6I | CCWGG | 3 cut(s) | 14, 81, 256 |
| PspGI | CCWGG | 3 cut(s) | 14, 81, 256 |
| PspN4I | GGNNCC | 3 cut(s) | 13, 80, 87 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 502, 534 |
| PstI | CTGCAG | 1 cut(s) | 128 |
| PsuI | RGATCY | 1 cut(s) | 193 |
| RruI | TCGCGA | 1 cut(s) | 93 |
| RsaI | GTAC | 1 cut(s) | 50 |
| RsaNI | GTAC | 1 cut(s) | 49 |
| RseI | CAYNNNNRTG | 2 cut(s) | 66, 624 |
| SaqAI | TTAA | 1 cut(s) | 401 |
| SatI | GCNGC | 1 cut(s) | 124 |
| Sau3AI | GATC | 1 cut(s) | 193 |
| SchI | GAGTC | 2 cut(s) | 13, 246 |
| ScrFI | CCNGG | 3 cut(s) | 16, 83, 258 |
| SexAI | ACCWGGT | 1 cut(s) | 81 |
| SfaNI | GCATC | 1 cut(s) | 101 |
| SfcI | CTRYAG | 3 cut(s) | 124, 418, 450 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 66, 624 |
| SmlI | CTYRAG | 1 cut(s) | 161 |
| SmoI | CTYRAG | 1 cut(s) | 161 |
| SpeI | ACTAGT | 1 cut(s) | 521 |
| Sse9I | AATT | 3 cut(s) | 240, 283, 598 |
| SsiI | CCGC | 1 cut(s) | 168 |
| SspI | AATATT | 1 cut(s) | 502 |
| SspMI | CTAG | 3 cut(s) | 387, 522, 662 |
| StyD4I | CCNGG | 3 cut(s) | 14, 81, 256 |
| TaaI | ACNGT | 2 cut(s) | 419, 589 |
| TaiI | ACGT | 1 cut(s) | 54 |
| TaqI | TCGA | 1 cut(s) | 581 |
| TasI | AATT | 3 cut(s) | 240, 283, 598 |
| TfiI | GAWTC | 3 cut(s) | 157, 467, 658 |
| Tru1I | TTAA | 1 cut(s) | 401 |
| Tru9I | TTAA | 1 cut(s) | 401 |
| TseFI | GTSAC | 1 cut(s) | 352 |
| TseI | GCWGC | 1 cut(s) | 123 |
| Tsp45I | GTSAC | 1 cut(s) | 352 |
| TspDTI | ATGAA | 5 cut(s) | 201, 338, 459, 611, 624 |
| TspGWI | ACGGA | 2 cut(s) | 349, 394 |
| XapI | RAATTY | 1 cut(s) | 598 |
| XbaI | TCTAGA | 1 cut(s) | 661 |
| XspI | CTAG | 3 cut(s) | 387, 522, 662 |