Rroxscaffold_2G00127520
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000402
Physical Location & Seq
Reverse (-)
63038889 .. 63040735
1847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00127520.1

Sequence Viewer

Length: 654 bp
ATGGAGGTGAGAAAAGGTTCATGGACCAAAGAGGAAGATCAACTTCTCAGGAACTACATTGAGAAACATGGAGAAGGAAGATGGCACAAGGTTCCTTTCCAAGCAGGCTTAAACCGATGCAGAAAGAGTTGTAGAATGAGGTGGTTGAATTATTTGAAGCCAAGCATTAAGAGAGGAGACTTTTCAGAGGATGAAGTCGATTTAATGATTAGGCTTCGGAAGCTTTTGAGAAACAGGTGGTCTTTGATTGCTAGACTGCTTCCTGGAAGAACATCAAATGATGTGAAAAACTATTGGAGTGCTCGGCGAAGGAGAGACATAGATTTTGGCATCATGAAAAATAATAAGCCTCCAAAAATAACAAAGAATACAGTAATAAGACCTCGACCACGAATCTTCACCAAAAGTCTACATTATTTAAGTGCTAGACCTGCAACTTCAAAACCTATTGAATTAGCAGGAAATAGTTCATCGTCAATATCACCACCTATACAGAATGAAGCTGATGAGTGGAAAACTCTACTAGAGGGAGATGTTCTTACAAACTTTTGGCTTGAGGATATGGCCTCAATGTCAAGTATAGGTGTCAATTCTACTGAACAAGGTTTTGAAATGGACCTTTGGCATTTTCTCCAAGAAGAAGCAAGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

217

Amino Acids

25.53

Weight (kDa)

9.92

Isoelectric Point (pI)

61.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 52 3.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 8 - 67 4e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 58 - 99 3e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 439
AccI GTMKAC 1 cut(s) 409
AgsI TTSAA 5 cut(s) 148, 157, 441, 452, 611
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 2 cut(s) 223, 503
AluI AGCT 2 cut(s) 223, 503
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 2 cut(s) 171, 309
AoxI GGCC 1 cut(s) 564
ArsI GACNNNNNNTTYG 2 cut(s) 308, 340
Asp700I GAANNNNTTC 2 cut(s) 16, 466
AspS9I GGNCC 2 cut(s) 24, 616
AsuHPI GGTGA 3 cut(s) 19, 391, 474
AvaII GGWCC 2 cut(s) 24, 616
Bbv12I GWGCWC 1 cut(s) 304
BccI CCATC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 264
BcoDI GTCTC 2 cut(s) 171, 309
BfaI CTAG 3 cut(s) 252, 426, 524
BfuAI ACCTGC 1 cut(s) 439
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 24, 616
BmgT120I GGNCC 2 cut(s) 24, 616
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 107, 339
BpuEI CTTGAG 1 cut(s) 575
BseBI CCWGG 1 cut(s) 264
BseGI GGATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 189
BshFI GGCC 1 cut(s) 566
BsiHKAI GWGCWC 1 cut(s) 304
BsmAI GTCTC 2 cut(s) 171, 309
BsnI GGCC 1 cut(s) 566
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 1 cut(s) 37
BspANI GGCC 1 cut(s) 566
BspCNI CTCAG 1 cut(s) 60
BspHI TCATGA 1 cut(s) 333
BspLI GGNNCC 1 cut(s) 93
BspMI ACCTGC 1 cut(s) 439
BssMI GATC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 373
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 1 cut(s) 40
BstMAI GTCTC 2 cut(s) 171, 309
BstMBI GATC 1 cut(s) 37
BstMWI GCNNNNNNNGC 2 cut(s) 220, 431
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BsuRI GGCC 1 cut(s) 566
BtsCI GGATG 1 cut(s) 196
BveI ACCTGC 1 cut(s) 439
Cac8I GCNNGC 1 cut(s) 106
CciI TCATGA 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 24, 616
CviAII CATG 3 cut(s) 21, 68, 334
CviJI RGCY 8 cut(s) 108, 160, 214, 223, 349, 503, 553, 566
CviKI_1 RGCY 8 cut(s) 108, 160, 214, 223, 349, 503, 553, 566
DdeI CTNAG 1 cut(s) 47
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eco47I GGWCC 2 cut(s) 24, 616
EcoRII CCWGG 1 cut(s) 262
FaeI CATG 3 cut(s) 24, 71, 337
FaiI YATR 7 cut(s) 22, 69, 320, 335, 491, 563, 581
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 3 cut(s) 20, 67, 333
FblI GTMKAC 1 cut(s) 409
FokI GGATG 1 cut(s) 203
FspBI CTAG 3 cut(s) 252, 426, 524
HaeIII GGCC 1 cut(s) 566
Hin1II CATG 3 cut(s) 24, 71, 337
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 393
HphI GGTGA 3 cut(s) 19, 391, 474
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 2 cut(s) 187, 219
Hpy188III TCNNGA 2 cut(s) 49, 334
Hpy8I GTNNAC 1 cut(s) 410
HpyAV CCTTC 2 cut(s) 68, 303
HpyCH4III ACNGT 1 cut(s) 373
HpyCH4V TGCA 2 cut(s) 120, 434
HpyF10VI GCNNNNNNNGC 2 cut(s) 220, 431
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 3 cut(s) 24, 71, 337
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 7 cut(s) 34, 90, 220, 249, 276, 444, 444
LweI GCATC 2 cut(s) 107, 339
MaeI CTAG 3 cut(s) 252, 426, 524
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 5 cut(s) 47, 90, 279, 388, 650
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 3 cut(s) 148, 452, 589
MnlI CCTC 9 cut(s) 25, 132, 167, 181, 360, 393, 520, 550, 577
MroXI GAANNNNTTC 2 cut(s) 16, 466
MseI TTAA 4 cut(s) 110, 168, 203, 419
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 220, 431
NdeII GATC 1 cut(s) 37
NlaIII CATG 3 cut(s) 24, 71, 337
NlaIV GGNNCC 1 cut(s) 93
NmeAIII GCCGAG 1 cut(s) 283
PagI TCATGA 1 cut(s) 333
PdmI GAANNNNTTC 2 cut(s) 16, 466
PfeI GAWTC 1 cut(s) 393
PfoI TCCNGGA 1 cut(s) 262
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 2 cut(s) 24, 616
SaqAI TTAA 4 cut(s) 110, 168, 203, 419
Sau3AI GATC 1 cut(s) 37
Sau96I GGNCC 2 cut(s) 24, 616
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 2 cut(s) 107, 339
SinI GGWCC 2 cut(s) 24, 616
SmlI CTYRAG 1 cut(s) 554
SmoI CTYRAG 1 cut(s) 554
Sse9I AATT 3 cut(s) 148, 452, 589
SspMI CTAG 3 cut(s) 252, 426, 524
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 373
TaqI TCGA 2 cut(s) 198, 385
TasI AATT 3 cut(s) 148, 452, 589
TfiI GAWTC 1 cut(s) 393
Tru1I TTAA 4 cut(s) 110, 168, 203, 419
Tru9I TTAA 4 cut(s) 110, 168, 203, 419
TspDTI ATGAA 5 cut(s) 9, 207, 350, 459, 513
VpaK11BI GGWCC 2 cut(s) 24, 616
XmiI GTMKAC 1 cut(s) 409
XmnI GAANNNNTTC 2 cut(s) 16, 466
XspI CTAG 3 cut(s) 252, 426, 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.