Rw2G020320
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000402
Physical Location & Seq
Reverse (-)
27646257 .. 27649087
2831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G020320.1

Sequence Viewer

Length: 651 bp
ATGGAGGTGAGAAAAGGTTCATGGACCAAAGAGGAAGATCAACTTCTCAGGAACTACATTGAGAAACATGGACAAGGAAGATGGCACAAGGTTCCTCTCCAAGCAGGCTTAAACCGATGCAGAAAGAGCTGTAGAATGAGGTGGTTGAATTATTTGAAGCCAAACATTAAGAAAGGAGACTTTGCAGAGGATGAAATCGATCTAATGATTAGGCTTCGGAAGCTTTTGGGAAACAGGTGGTCTTTGATTGCTGGACGACTTCCTGGAAGAACATCAAACGATGTGAAAAACTATTGGAGTGCTCGAGGAAGAAGAAACATAAATTTTAGCTTCACAAAAAATTATAAGCATCTAGAAATAACAAAGACCACAATAATAAGACCTCGACCACGAACCTTCACCAAAAGTTTGCATTATTTAAGTGCTAAAGCTACAACTTCAAAACCTATTAATTTGGAAAATAGTTCATCGTCAACATCACCACCTATGCAGAATGGAAATGAGGAGTGGAAAACTCTACTGGAGGAAGATGTCCTTACAAACTTTTGGAATGAGGATACAGTCTCAATGTCAAGTATGGGTGTTAATTCTACTCAACAAGGTTTTGAAATGGACCTTTGGCATTTTCTACAAGAAGAAGCAAGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

216

Amino Acids

25.41

Weight (kDa)

9.85

Isoelectric Point (pI)

55.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 52 6.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 8 - 67 5.9e-14 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 58 - 99 3.4e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 345
AcsI RAATTY 1 cut(s) 322
AgsI TTSAA 4 cut(s) 148, 157, 441, 608
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 4 cut(s) 129, 223, 330, 431
AluI AGCT 4 cut(s) 129, 223, 330, 431
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 2 cut(s) 171, 568
Ama87I CYCGRG 1 cut(s) 303
ApoI RAATTY 1 cut(s) 322
AseI ATTAAT 1 cut(s) 450
Asp700I GAANNNNTTC 1 cut(s) 16
AspS9I GGNCC 2 cut(s) 24, 613
AsuHPI GGTGA 3 cut(s) 19, 391, 471
AvaI CYCGRG 1 cut(s) 303
AvaII GGWCC 2 cut(s) 24, 613
Bbv12I GWGCWC 1 cut(s) 304
BccI CCATC 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 264
BciVI GTATCC 1 cut(s) 550
BcoDI GTCTC 2 cut(s) 171, 568
BfaI CTAG 1 cut(s) 353
BfmI CTRYAG 1 cut(s) 130
BfuI GTATCC 1 cut(s) 550
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 24, 613
BmeT110I CYCGRG 1 cut(s) 303
BmgT120I GGNCC 2 cut(s) 24, 613
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 2 cut(s) 107, 358
BpmI CTGGAG 1 cut(s) 542
Bsa29I ATCGAT 1 cut(s) 198
Bse1I ACTGG 1 cut(s) 525
BseBI CCWGG 1 cut(s) 264
BseCI ATCGAT 1 cut(s) 198
BseGI GGATG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 525
BseRI GAGGAG 1 cut(s) 518
BshVI ATCGAT 1 cut(s) 198
BsiHKAI GWGCWC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 303
BsmAI GTCTC 2 cut(s) 171, 568
BsoBI CYCGRG 1 cut(s) 303
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 2 cut(s) 37, 199
BspCNI CTCAG 1 cut(s) 60
BspDI ATCGAT 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 93
BsrI ACTGG 1 cut(s) 525
BssMI GATC 2 cut(s) 37, 199
Bst2UI CCWGG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 562
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 2 cut(s) 40, 202
BstMAI GTCTC 2 cut(s) 171, 568
BstMBI GATC 2 cut(s) 37, 199
BstMWI GCNNNNNNNGC 2 cut(s) 126, 220
BstNI CCWGG 1 cut(s) 264
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 130
Bsu15I ATCGAT 1 cut(s) 198
BsuI GTATCC 1 cut(s) 550
BsuTUI ATCGAT 1 cut(s) 198
BtsCI GGATG 1 cut(s) 196
Cac8I GCNNGC 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 24, 613
ClaI ATCGAT 1 cut(s) 198
CviAII CATG 2 cut(s) 21, 68
CviJI RGCY 7 cut(s) 108, 129, 160, 214, 223, 330, 431
CviKI_1 RGCY 7 cut(s) 108, 129, 160, 214, 223, 330, 431
DdeI CTNAG 1 cut(s) 47
DpnI GATC 2 cut(s) 39, 201
DpnII GATC 2 cut(s) 37, 199
Eco47I GGWCC 2 cut(s) 24, 613
Eco88I CYCGRG 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 262
FaeI CATG 2 cut(s) 24, 71
FaiI YATR 6 cut(s) 22, 69, 320, 345, 488, 578
FalI AAGNNNNNCTT 4 cut(s) 27, 59, 519, 551
FatI CATG 2 cut(s) 20, 67
FokI GGATG 1 cut(s) 203
FspBI CTAG 1 cut(s) 353
GsuI CTGGAG 1 cut(s) 542
Hin1II CATG 2 cut(s) 24, 71
HincII GTYRAC 1 cut(s) 474
HindII GTYRAC 1 cut(s) 474
HindIII AAGCTT 1 cut(s) 221
HphI GGTGA 3 cut(s) 19, 391, 471
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 1 cut(s) 219
Hpy188III TCNNGA 2 cut(s) 49, 353
Hpy8I GTNNAC 1 cut(s) 474
HpyAV CCTTC 1 cut(s) 406
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4V TGCA 4 cut(s) 120, 185, 412, 490
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 220
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 2 cut(s) 24, 71
Kzo9I GATC 2 cut(s) 37, 199
LpnPI CCDG 7 cut(s) 34, 90, 220, 237, 249, 276, 506
LweI GCATC 2 cut(s) 107, 358
MaeI CTAG 1 cut(s) 353
MalI GATC 2 cut(s) 39, 201
MboI GATC 2 cut(s) 37, 199
MboII GAAGA 7 cut(s) 47, 90, 279, 321, 324, 539, 647
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 5 cut(s) 148, 322, 340, 451, 586
MnlI CCTC 9 cut(s) 25, 105, 132, 181, 299, 393, 496, 517, 547
MroXI GAANNNNTTC 1 cut(s) 16
MseI TTAA 5 cut(s) 110, 168, 419, 450, 585
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 126, 220
NdeII GATC 2 cut(s) 37, 199
NlaIII CATG 2 cut(s) 24, 71
NlaIV GGNNCC 1 cut(s) 93
PaeR7I CTCGAG 1 cut(s) 303
PdmI GAANNNNTTC 1 cut(s) 16
PfoI TCCNGGA 1 cut(s) 262
PshBI ATTAAT 1 cut(s) 450
PsiI TTATAA 1 cut(s) 345
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 2 cut(s) 24, 613
PspXI VCTCGAGB 1 cut(s) 303
SaqAI TTAA 5 cut(s) 110, 168, 419, 450, 585
Sau3AI GATC 2 cut(s) 37, 199
Sau96I GGNCC 2 cut(s) 24, 613
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 2 cut(s) 107, 358
SfcI CTRYAG 1 cut(s) 130
Sfr274I CTCGAG 1 cut(s) 303
SinI GGWCC 2 cut(s) 24, 613
SlaI CTCGAG 1 cut(s) 303
SmlI CTYRAG 1 cut(s) 303
SmoI CTYRAG 1 cut(s) 303
Sse9I AATT 5 cut(s) 148, 322, 340, 451, 586
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 562
TaqI TCGA 3 cut(s) 198, 304, 385
TasI AATT 5 cut(s) 148, 322, 340, 451, 586
Tru1I TTAA 5 cut(s) 110, 168, 419, 450, 585
Tru9I TTAA 5 cut(s) 110, 168, 419, 450, 585
TspDTI ATGAA 3 cut(s) 9, 207, 456
VpaK11BI GGWCC 2 cut(s) 24, 613
VspI ATTAAT 1 cut(s) 450
XapI RAATTY 1 cut(s) 322
XbaI TCTAGA 1 cut(s) 352
XhoI CTCGAG 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 16
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.