Rw4G016880
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000402
Physical Location & Seq
Forward (+)
38279331 .. 38283716
4386 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G016880.1

Sequence Viewer

Length: 645 bp
ATGGAGTTGAGAAAAGGTGCATGGACCAAAGAGGAAGATCATCTTCTCAGGAAATGCATTGAAAAACATGGAGAAGGAATATGGCACAAGATTCCTCTCCAAGCAGGCTTAAAGAGATGCAGAAAGAGCTGTAGAATGAGGTGGTTGAACTACCTGAAGCCAACCATCAAGAGAGGAGAATTTGAAGATGATGAAGTCGATCTAATGATTAAGCTTTATAAGCTTTTAGGAAACAGGTGGTCATTGATTGCTGGCCGACTTCCAGGAAGAACCTCAAATGATGTGAAAAACTATTGGAATGCTCGGCGAAGGAGAAATGAATTGAACATCAAAAAAGATAAATCTCGACAAATGACAAAGACCCCTATAATAAAGCCTCGACCACGGACCTTCACAAAAAGTTTACATATTTCGGGTGACAGAGCAGCAACCTCAAAGAATAGTAATATAAACATATCATTACCTCCAATAAATGGACTTGATGAGTGGAAAATTGTACCAGCGGAACATGCCCCTACAAACTTATGGGTTCAAGATATGGCGTCAGTGACCGAAACATGTGTCAATGTTGCCGAGCGAAGTTTCGAATCTGACCTTTGGCATTTTCTCCAAGAAGAGTTGAGAGAACAAGATTTAGACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

214

Amino Acids

25.15

Weight (kDa)

9.61

Isoelectric Point (pI)

56.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 52 1e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 8 - 67 1.2e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 58 - 100 1.6e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 62 - 101 7.6e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
AccB7I CCANNNNNTGG 1 cut(s) 473
AciI CCGC 1 cut(s) 503
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 179
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 1 cut(s) 542
AfaI GTAC 1 cut(s) 498
AfiI CCNNNNNNNGG 1 cut(s) 473
AflIII ACRYGT 1 cut(s) 557
AgsI TTSAA 5 cut(s) 62, 148, 185, 325, 533
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 3 cut(s) 129, 214, 223
AluI AGCT 3 cut(s) 129, 214, 223
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 179
ArsI GACNNNNNNTTYG 2 cut(s) 546, 578
AspS9I GGNCC 2 cut(s) 24, 387
AsuHPI GGTGA 1 cut(s) 428
AsuII TTCGAA 1 cut(s) 585
AvaII GGWCC 2 cut(s) 24, 387
BbvI GCAGC 1 cut(s) 437
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 130
BisI GCNGC 1 cut(s) 426
BlsI GCNGC 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 24, 387
BmgT120I GGNCC 2 cut(s) 24, 387
BmrFI CCNGG 1 cut(s) 264
BmsI GCATC 1 cut(s) 107
Bpu14I TTCGAA 1 cut(s) 585
BsaHI GRCGYC 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 383
Bsc4I CCNNNNNNNGG 1 cut(s) 473
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 1 cut(s) 383
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMII CTCAG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 1 cut(s) 437
BshFI GGCC 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 473
BsmI GAATGC 1 cut(s) 304
BsnI GGCC 1 cut(s) 255
Bsp119I TTCGAA 1 cut(s) 585
Bsp143I GATC 2 cut(s) 37, 199
BspACI CCGC 1 cut(s) 503
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 60
BspT104I TTCGAA 1 cut(s) 585
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 2 cut(s) 37, 199
BssNI GRCGYC 1 cut(s) 542
Bst2UI CCWGG 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 609
BstACI GRCGYC 1 cut(s) 542
BstBI TTCGAA 1 cut(s) 585
BstC8I GCNNGC 2 cut(s) 106, 253
BstDEI CTNAG 1 cut(s) 47
BstDSI CCRYGG 1 cut(s) 383
BstKTI GATC 2 cut(s) 40, 202
BstMBI GATC 2 cut(s) 37, 199
BstMWI GCNNNNNNNGC 3 cut(s) 126, 220, 509
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 2 cut(s) 512, 561
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 437
BsuRI GGCC 1 cut(s) 255
BtgI CCRYGG 1 cut(s) 383
BtsIMutI CAGTG 1 cut(s) 552
Cac8I GCNNGC 2 cut(s) 106, 253
Cfr13I GGNCC 2 cut(s) 24, 387
CseI GACGC 1 cut(s) 531
Csp6I GTAC 1 cut(s) 497
CviAII CATG 4 cut(s) 21, 68, 509, 558
CviJI RGCY 7 cut(s) 108, 129, 160, 214, 223, 255, 376
CviKI_1 RGCY 7 cut(s) 108, 129, 160, 214, 223, 255, 376
CviQI GTAC 1 cut(s) 497
DdeI CTNAG 1 cut(s) 47
DpnI GATC 2 cut(s) 39, 201
DpnII GATC 2 cut(s) 37, 199
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
Eco47I GGWCC 2 cut(s) 24, 387
Eco57I CTGAAG 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 262
EcoT22I ATGCAT 1 cut(s) 59
FaeI CATG 4 cut(s) 24, 71, 512, 561
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 4 cut(s) 20, 67, 508, 557
Fnu4HI GCNGC 1 cut(s) 426
Fsp4HI GCNGC 1 cut(s) 426
GluI GCNGC 1 cut(s) 426
HaeIII GGCC 1 cut(s) 255
HgaI GACGC 1 cut(s) 531
Hin1I GRCGYC 1 cut(s) 542
Hin1II CATG 4 cut(s) 24, 71, 512, 561
HindIII AAGCTT 2 cut(s) 212, 221
HinfI GANTC 2 cut(s) 91, 587
HphI GGTGA 1 cut(s) 428
Hpy166II GTNNAC 1 cut(s) 404
Hpy188I TCNGA 2 cut(s) 592, 644
Hpy188III TCNNGA 4 cut(s) 49, 169, 345, 533
Hpy8I GTNNAC 1 cut(s) 404
HpyAV CCTTC 3 cut(s) 68, 303, 400
HpyCH4V TGCA 3 cut(s) 20, 57, 120
HpyF10VI GCNNNNNNNGC 3 cut(s) 126, 220, 509
HpyF3I CTNAG 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 542
Hsp92II CATG 4 cut(s) 24, 71, 512, 561
Kzo9I GATC 2 cut(s) 37, 199
LpnPI CCDG 8 cut(s) 34, 90, 167, 220, 237, 249, 276, 513
Lsp1109I GCAGC 1 cut(s) 437
LweI GCATC 1 cut(s) 107
MaeIII GTNAC 2 cut(s) 416, 547
MalI GATC 2 cut(s) 39, 201
MboI GATC 2 cut(s) 37, 199
MboII GAAGA 5 cut(s) 35, 47, 197, 279, 626
MluCI AATT 3 cut(s) 179, 320, 492
MnlI CCTC 8 cut(s) 25, 105, 132, 167, 283, 387, 442, 474
Mph1103I ATGCAT 1 cut(s) 59
MseI TTAA 2 cut(s) 110, 210
MspA1I CMGCKG 1 cut(s) 503
MspR9I CCNGG 1 cut(s) 264
Mva1269I GAATGC 1 cut(s) 304
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 3 cut(s) 126, 220, 509
NdeII GATC 2 cut(s) 37, 199
NlaIII CATG 4 cut(s) 24, 71, 512, 561
NmeAIII GCCGAG 2 cut(s) 283, 598
NmuCI GTSAC 2 cut(s) 416, 547
NsiI ATGCAT 1 cut(s) 59
NspI RCATGY 2 cut(s) 512, 561
NspV TTCGAA 1 cut(s) 585
PciI ACATGT 1 cut(s) 557
PctI GAATGC 1 cut(s) 304
PfeI GAWTC 2 cut(s) 91, 587
PflMI CCANNNNNTGG 1 cut(s) 473
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 1 cut(s) 427
PscI ACATGT 1 cut(s) 557
PsiI TTATAA 1 cut(s) 219
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspPI GGNCC 2 cut(s) 24, 387
RsaI GTAC 1 cut(s) 498
RsaNI GTAC 1 cut(s) 497
SaqAI TTAA 2 cut(s) 110, 210
SatI GCNGC 1 cut(s) 426
Sau3AI GATC 2 cut(s) 37, 199
Sau96I GGNCC 2 cut(s) 24, 387
ScrFI CCNGG 1 cut(s) 264
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 130
SfuI TTCGAA 1 cut(s) 585
SinI GGWCC 2 cut(s) 24, 387
Sse9I AATT 3 cut(s) 179, 320, 492
SsiI CCGC 1 cut(s) 503
StyD4I CCNGG 1 cut(s) 262
TaqI TCGA 4 cut(s) 198, 346, 379, 585
TaqII GACCGA 1 cut(s) 566
TasI AATT 3 cut(s) 179, 320, 492
TfiI GAWTC 2 cut(s) 91, 587
Tru1I TTAA 2 cut(s) 110, 210
Tru9I TTAA 2 cut(s) 110, 210
TscAI CASTG 1 cut(s) 552
TseFI GTSAC 2 cut(s) 416, 547
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 2 cut(s) 416, 547
TspDTI ATGAA 2 cut(s) 207, 333
TspGWI ACGGA 1 cut(s) 400
TspRI CASTG 1 cut(s) 552
Van91I CCANNNNNTGG 1 cut(s) 473
VpaK11BI GGWCC 2 cut(s) 24, 387
XapI RAATTY 1 cut(s) 179
XceI RCATGY 2 cut(s) 512, 561
Zsp2I ATGCAT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.