Rh4DG197300
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000402
Physical Location & Seq
Forward (+)
38478720 .. 38479049
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG197300.1

Sequence Viewer

Length: 330 bp
ATGGATTTGAACATCGAAAAAGATAAATCTCGACAAATGACAAAGACCCCTATAATAAAGCCTCGACCACGGACCTTCACAAAAAGTTTACATATTCCGGGTCACAGAGCAGCAACCTCAAAGAATGCTAATATAAACATATCATTACCTCTAGTAAATGGACTTGATGAGTGGAAAATTGTACCAGCGGAACATGTCCCTACAAACTTATGGGTTCAAGATATGGCCTCAGTGACCGAAACATGTGTCAATGTTGCCGAACGAAGTTTCGAATCTGACCTTTGGCATTTTCTCCAAGAAGAGATGAGAGAACAAGATTCAGACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

109

Amino Acids

12.54

Weight (kDa)

5.76

Isoelectric Point (pI)

59.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 188
AfaI GTAC 1 cut(s) 183
AflIII ACRYGT 2 cut(s) 193, 242
AgsI TTSAA 2 cut(s) 10, 218
AoxI GGCC 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 110
ArsI GACNNNNNNTTYG 2 cut(s) 231, 263
AspS9I GGNCC 1 cut(s) 72
AsuC2I CCSGG 1 cut(s) 99
AsuII TTCGAA 1 cut(s) 270
AvaII GGWCC 1 cut(s) 72
BbvI GCAGC 1 cut(s) 122
BcnI CCSGG 1 cut(s) 99
BfaI CTAG 1 cut(s) 152
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 270
BpuMI CCSGG 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 243
BseXI GCAGC 1 cut(s) 122
BshFI GGCC 1 cut(s) 227
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 182
BsmI GAATGC 1 cut(s) 130
BsnI GGCC 1 cut(s) 227
Bsp119I TTCGAA 1 cut(s) 270
BspACI CCGC 1 cut(s) 188
BspANI GGCC 1 cut(s) 227
BspCNI CTCAG 1 cut(s) 242
BspT104I TTCGAA 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 294
BstBI TTCGAA 1 cut(s) 270
BstDEI CTNAG 1 cut(s) 229
BstDSI CCRYGG 1 cut(s) 68
BstNSI RCATGY 2 cut(s) 197, 246
BstSCI CCNGG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 122
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 68
BtsIMutI CAGTG 1 cut(s) 237
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 1 cut(s) 182
CviAII CATG 2 cut(s) 194, 243
CviJI RGCY 2 cut(s) 61, 227
CviKI_1 RGCY 2 cut(s) 61, 227
CviQI GTAC 1 cut(s) 182
DdeI CTNAG 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Eco47I GGWCC 1 cut(s) 72
FaeI CATG 2 cut(s) 197, 246
FaiI YATR 8 cut(s) 53, 93, 134, 140, 195, 211, 224, 244
FaqI GGGAC 1 cut(s) 182
FatI CATG 2 cut(s) 193, 242
Fnu4HI GCNGC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 111
FspBI CTAG 1 cut(s) 152
GluI GCNGC 1 cut(s) 111
HaeIII GGCC 1 cut(s) 227
HapII CCGG 1 cut(s) 98
Hin1II CATG 2 cut(s) 197, 246
HinfI GANTC 2 cut(s) 272, 317
HpaII CCGG 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 89
Hpy188I TCNGA 3 cut(s) 277, 322, 329
Hpy188III TCNNGA 2 cut(s) 30, 218
Hpy8I GTNNAC 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 85
HpyF3I CTNAG 1 cut(s) 229
Hsp92II CATG 2 cut(s) 197, 246
LpnPI CCDG 2 cut(s) 111, 198
Lsp1109I GCAGC 1 cut(s) 122
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 2 cut(s) 101, 232
MboII GAAGA 1 cut(s) 311
MluCI AATT 1 cut(s) 177
MnlI CCTC 4 cut(s) 72, 127, 159, 238
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 99
Mva1269I GAATGC 1 cut(s) 130
NciI CCSGG 1 cut(s) 99
NlaIII CATG 2 cut(s) 197, 246
NmuCI GTSAC 2 cut(s) 101, 232
NspI RCATGY 2 cut(s) 197, 246
NspV TTCGAA 1 cut(s) 270
PciI ACATGT 2 cut(s) 193, 242
PctI GAATGC 1 cut(s) 130
PfeI GAWTC 2 cut(s) 272, 317
PkrI GCNGC 1 cut(s) 112
PscI ACATGT 2 cut(s) 193, 242
PspPI GGNCC 1 cut(s) 72
RsaI GTAC 1 cut(s) 183
RsaNI GTAC 1 cut(s) 182
SatI GCNGC 1 cut(s) 111
Sau96I GGNCC 1 cut(s) 72
ScrFI CCNGG 1 cut(s) 99
SetI ASST 4 cut(s) 77, 119, 151, 282
SfuI TTCGAA 1 cut(s) 270
SinI GGWCC 1 cut(s) 72
Sse9I AATT 1 cut(s) 177
SsiI CCGC 1 cut(s) 188
SspMI CTAG 1 cut(s) 152
StyD4I CCNGG 1 cut(s) 97
TaqI TCGA 4 cut(s) 15, 31, 64, 270
TaqII GACCGA 1 cut(s) 251
TasI AATT 1 cut(s) 177
TfiI GAWTC 2 cut(s) 272, 317
TscAI CASTG 1 cut(s) 237
TseFI GTSAC 2 cut(s) 101, 232
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 2 cut(s) 101, 232
TspGWI ACGGA 1 cut(s) 85
TspRI CASTG 1 cut(s) 237
VpaK11BI GGWCC 1 cut(s) 72
XceI RCATGY 2 cut(s) 197, 246
XspI CTAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.