AT1G66370
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000402
Physical Location & Seq
Forward (+)
24753589 .. 24754761
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G66370.1

Sequence Viewer

Length: 741 bp
ATGGGCGAATCACCCAAAGGGTTGAGAAAAGGTACATGGACTACTGAAGAAGATATTCTCTTGAGGCAATGCATTGATAAGTATGGAGAAGGCAAATGGCATCGAGTTCCTTTAAGAACTGGTCTCAATCGGTGCCGAAAGAGTTGTAGACTTAGATGGTTGAATTATTTGAAGCCAAGTATTAAGAGAGGAAAACTCTGCTCCGATGAAGTTGATCTTGTTCTTCGCCTTCATAAACTTCTAGGAAATAGGTGGTCCTTGATCGCTGGTAGATTGCCTGGTCGGACTGCTAATGATGTCAAGAATTACTGGAACACTCATTTGAGTAAGAAGCACGATGAACGATGCTGTAAGACGAAGATGATAAACAAAAACATTACTTCTCATCCTACTTCATCGGCCCAAAAAATCGATGTTTTAAAGCCTCGGCCTCGATCCTTCTCCGATAAAAATAGTTGCAACGATGTCAATATCTTGCCAAAAGTTGACGTTGTTCCTTTACATCTTGGACTCAACAACAATTATGTTTGTGAAAGTAGTATTACATGTAACAAAGATGAGCAAAAAGATAAGCTTATTAATATTAATCTATTGGATGGAGATAATATGTGGTGGGAAAGTTTACTGGAGGCAGATGTGTTGGGTCCAGAAGCTACGGAAACAGCAAAGGGTGTGACCTTACCGCTTGACTTTGAGCAAATTTGGGCTCGGTTTGATGAAGAGACTTTAGAACTGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000302 GO:0000303 GO:0000305 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002239 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006801 GO:0006950 GO:0006970 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009628 GO:0009636 GO:0009651 GO:0009718 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009743 GO:0009744 GO:0009745 GO:0009753 GO:0009755 GO:0009756 GO:0009812 GO:0009813 GO:0009867 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010035 GO:0010182 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019430 GO:0023052 GO:0030154 GO:0031323 GO:0031326 GO:0031537 GO:0031539 GO:0031540 GO:0031542 GO:0032502 GO:0032870 GO:0033554 GO:0034285 GO:0034599 GO:0034614 GO:0042221 GO:0042440 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044424 GO:0044464 GO:0046148 GO:0046283 GO:0048518 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071395 GO:0071450 GO:0071451 GO:0071495 GO:0071704 GO:0072593 GO:0080090 GO:0080167 GO:0097159 GO:0097237 GO:0098754 GO:0098869 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1903506 GO:1990748 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

246

Amino Acids

28.31

Weight (kDa)

8.9

Isoelectric Point (pI)

42.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 10 - 57 2.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 13 - 71 1.5e-09 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 69 - 108 1.8e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 69 - 111 9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 132
AccI GTMKAC 1 cut(s) 148
AciI CCGC 1 cut(s) 683
AclWI GGATC 1 cut(s) 429
AcsI RAATTY 1 cut(s) 699
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 1 cut(s) 34
AflIII ACRYGT 1 cut(s) 545
AgsI TTSAA 2 cut(s) 163, 172
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 2 cut(s) 574, 653
AluI AGCT 2 cut(s) 574, 653
Alw26I GTCTC 2 cut(s) 128, 716
AlwI GGATC 1 cut(s) 429
AoxI GGCC 2 cut(s) 399, 428
ApoI RAATTY 1 cut(s) 699
AseI ATTAAT 2 cut(s) 579, 585
Asp700I GAANNNNTTC 1 cut(s) 54
AspS9I GGNCC 3 cut(s) 255, 400, 644
AsuHPI GGTGA 1 cut(s) 3
AvaII GGWCC 2 cut(s) 255, 644
BanI GGYRCC 1 cut(s) 132
BanII GRGCYC 1 cut(s) 709
BccI CCATC 2 cut(s) 150, 590
BciT130I CCWGG 1 cut(s) 279
BcoDI GTCTC 2 cut(s) 128, 716
BfaI CTAG 1 cut(s) 242
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 2 cut(s) 255, 644
BmgT120I GGNCC 3 cut(s) 255, 400, 644
BmiI GGNNCC 2 cut(s) 134, 645
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 2 cut(s) 109, 335
BplI GAGNNNNNCTC 2 cut(s) 180, 212
BpmI CTGGAG 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 411
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 425
Bse1I ACTGG 3 cut(s) 124, 314, 630
Bse3DI GCAATG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 279
BseCI ATCGAT 1 cut(s) 411
BseDI CCNNGG 1 cut(s) 425
BseGI GGATG 2 cut(s) 385, 601
BseMI GCAATG 1 cut(s) 74
BseNI ACTGG 3 cut(s) 124, 314, 630
BshFI GGCC 2 cut(s) 401, 430
BshNI GGYRCC 1 cut(s) 132
BshVI ATCGAT 1 cut(s) 411
BsmAI GTCTC 2 cut(s) 128, 716
BsnI GGCC 2 cut(s) 401, 430
Bso31I GGTCTC 1 cut(s) 128
Bsp1286I GDGCHC 1 cut(s) 709
Bsp143I GATC 3 cut(s) 214, 261, 434
BspACI CCGC 1 cut(s) 683
BspANI GGCC 2 cut(s) 401, 430
BspDI ATCGAT 1 cut(s) 411
BspLI GGNNCC 2 cut(s) 134, 645
BspPI GGATC 1 cut(s) 429
BspT107I GGYRCC 1 cut(s) 132
BspTNI GGTCTC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 74
BsrI ACTGG 3 cut(s) 124, 314, 630
BssECI CCNNGG 1 cut(s) 425
BssMI GATC 3 cut(s) 214, 261, 434
Bst2UI CCWGG 1 cut(s) 279
Bst6I CTCTTC 1 cut(s) 714
BstDEI CTNAG 1 cut(s) 152
BstF5I GGATG 2 cut(s) 385, 601
BstKTI GATC 3 cut(s) 217, 264, 437
BstMAI GTCTC 2 cut(s) 128, 716
BstMBI GATC 3 cut(s) 214, 261, 434
BstNI CCWGG 1 cut(s) 279
BstNSI RCATGY 1 cut(s) 549
BstSCI CCNGG 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 411
BsuRI GGCC 2 cut(s) 401, 430
BsuTUI ATCGAT 1 cut(s) 411
BtsCI GGATG 2 cut(s) 385, 601
Cfr13I GGNCC 3 cut(s) 255, 400, 644
ClaI ATCGAT 1 cut(s) 411
Csp6I GTAC 1 cut(s) 33
CviAII CATG 2 cut(s) 36, 546
CviJI RGCY 7 cut(s) 175, 401, 424, 430, 574, 653, 707
CviKI_1 RGCY 7 cut(s) 175, 401, 424, 430, 574, 653, 707
CviQI GTAC 1 cut(s) 33
DdeI CTNAG 1 cut(s) 152
DpnI GATC 3 cut(s) 216, 263, 436
DpnII GATC 3 cut(s) 214, 261, 434
DraI TTTAAA 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
Eco24I GRGCYC 1 cut(s) 709
Eco31I GGTCTC 1 cut(s) 128
Eco47I GGWCC 2 cut(s) 255, 644
Eco57I CTGAAG 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 277
EcoT22I ATGCAT 1 cut(s) 74
EcoT38I GRGCYC 1 cut(s) 709
FaeI CATG 2 cut(s) 39, 549
FaiI YATR 6 cut(s) 37, 84, 234, 525, 547, 608
FalI AAGNNNNNCTT 4 cut(s) 201, 233, 558, 590
FatI CATG 2 cut(s) 35, 545
FblI GTMKAC 1 cut(s) 148
FokI GGATG 2 cut(s) 372, 608
FriOI GRGCYC 1 cut(s) 709
FspBI CTAG 1 cut(s) 242
GsuI CTGGAG 1 cut(s) 647
HaeIII GGCC 2 cut(s) 401, 430
Hin1II CATG 2 cut(s) 39, 549
HincII GTYRAC 1 cut(s) 487
HindII GTYRAC 1 cut(s) 487
HindIII AAGCTT 1 cut(s) 572
HinfI GANTC 2 cut(s) 8, 510
HphI GGTGA 1 cut(s) 3
Hpy166II GTNNAC 3 cut(s) 149, 487, 623
Hpy188I TCNGA 3 cut(s) 205, 285, 445
Hpy188III TCNNGA 3 cut(s) 61, 301, 647
Hpy8I GTNNAC 3 cut(s) 149, 487, 623
HpyAV CCTTC 3 cut(s) 83, 239, 448
HpyCH4IV ACGT 1 cut(s) 489
HpyCH4V TGCA 2 cut(s) 72, 459
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 489
Hsp92II CATG 2 cut(s) 39, 549
Kzo9I GATC 3 cut(s) 214, 261, 434
LmnI GCTCC 1 cut(s) 206
LpnPI CCDG 7 cut(s) 105, 252, 264, 291, 295, 611, 660
LweI GCATC 2 cut(s) 109, 335
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 489
MaeIII GTNAC 2 cut(s) 548, 673
MalI GATC 3 cut(s) 216, 263, 436
MboI GATC 3 cut(s) 214, 261, 434
MboII GAAGA 5 cut(s) 59, 62, 215, 370, 731
MhlI GDGCHC 1 cut(s) 709
MluCI AATT 5 cut(s) 163, 304, 520, 699, 736
MlyI GAGTC 1 cut(s) 504
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 5 cut(s) 57, 182, 435, 441, 622
Mph1103I ATGCAT 1 cut(s) 74
MroXI GAANNNNTTC 1 cut(s) 54
MseI TTAA 5 cut(s) 113, 183, 419, 579, 585
MspR9I CCNGG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 279
NdeII GATC 3 cut(s) 214, 261, 434
NlaIII CATG 2 cut(s) 39, 549
NlaIV GGNNCC 2 cut(s) 134, 645
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 673
NsiI ATGCAT 1 cut(s) 74
NspI RCATGY 1 cut(s) 549
PciI ACATGT 1 cut(s) 545
PdmI GAANNNNTTC 1 cut(s) 54
PfeI GAWTC 1 cut(s) 8
PleI GAGTC 1 cut(s) 504
PpsI GAGTC 1 cut(s) 504
PscI ACATGT 1 cut(s) 545
PshBI ATTAAT 2 cut(s) 579, 585
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 2 cut(s) 134, 645
PspPI GGNCC 3 cut(s) 255, 400, 644
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SaqAI TTAA 5 cut(s) 113, 183, 419, 579, 585
Sau3AI GATC 3 cut(s) 214, 261, 434
Sau96I GGNCC 3 cut(s) 255, 400, 644
SchI GAGTC 1 cut(s) 504
ScrFI CCNGG 1 cut(s) 279
SduI GDGCHC 1 cut(s) 709
SetI ASST 6 cut(s) 34, 254, 492, 576, 655, 680
SfaNI GCATC 2 cut(s) 109, 335
SinI GGWCC 2 cut(s) 255, 644
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 5 cut(s) 163, 304, 520, 699, 736
SsiI CCGC 1 cut(s) 683
SspI AATATT 1 cut(s) 583
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 277
TaiI ACGT 1 cut(s) 492
TaqI TCGA 3 cut(s) 103, 411, 433
TasI AATT 5 cut(s) 163, 304, 520, 699, 736
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 5 cut(s) 113, 183, 419, 579, 585
Tru9I TTAA 5 cut(s) 113, 183, 419, 579, 585
TseFI GTSAC 1 cut(s) 673
Tsp45I GTSAC 1 cut(s) 673
TspDTI ATGAA 5 cut(s) 221, 222, 354, 384, 732
TspGWI ACGGA 1 cut(s) 671
VpaK11BI GGWCC 2 cut(s) 255, 644
VspI ATTAAT 2 cut(s) 579, 585
XapI RAATTY 1 cut(s) 699
XceI RCATGY 1 cut(s) 549
XmiI GTMKAC 1 cut(s) 148
XmnI GAANNNNTTC 1 cut(s) 54
XspI CTAG 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.