FvH4_6g01170
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000402
Physical Location & Seq
Reverse (-)
635386 .. 637476
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01170.t1

Sequence Viewer

Length: 882 bp
ATGTCAGAAGATGAAGATTCAGAGCAGAATGGAGATAGCGAAGCTTCTCCGCCTATGAGACTGGTATTGGCCCAGACAGCAGATGGAGTAAAAAATGAGGCCACATTTCACTGTTCTTTTACATCTCGCCCTTTAGCGTTTTCAGGCCCAAAGACTAATCCGTGCCGAGGGATCATGTCAGAACGTTTCCTCTCTTCTGGCCACCAAGAATTCGAACCTAGAGATTCATCAACAACTACAACATTACAGTATCAGAGAGTAGAGAAAGATGGGTGGTATTCCATGGACTGCGGAAGAGGATCAGTTGCTGAGGAAGTGCATAGAGAAGAATGGAGAAGGCAAATGGCATCAAATTCCTCACTTAGCCGGTGGTCATTAGTTGCAGCTAGGCTTCCAGGAAGGACCGGTAATGATGTGAAGAACTATTGGAATTGCCACTTGAGCAAGAAGCTAAATGCTCAAGAACCTCATGATGATCATCAGAAGATAAATCATGCAAGTAATGTACAAGTCATCAGACCCCAACCTTCAAAATATGCCAGCTCAAACTCAAAGAGGCCAATGATAAGTAGTACTCTTGAGGATCAGCCTTGCCAAGCCTTGGAGGAAAGCAACAGATCATCAAAGGCAATCCTGTGCAGTATTGATAGAGACCAGGGGCAGATCGGTCAGATAGTTGAGAGAGAGGATAGCAACAATCCATGTGTAAAGGAAGAACAGGAAGGGAACAATGACTTCATTGGTGATTTCGGGATGGTAGACCTTGATCAATTTGAACAAGTTATTGAGCAATATGATCAAGAGGTCAACAACAACAACAACAAATGGGAGTGGGATGACTCCATCTTGGACATGGATCTTTGGATTTCTGACTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

294

Amino Acids

33.29

Weight (kDa)

4.72

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 123 - 146 2.2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 601
AccI GTMKAC 1 cut(s) 759
AciI CCGC 2 cut(s) 50, 291
AclI AACGTT 1 cut(s) 184
AclWI GGATC 4 cut(s) 179, 307, 591, 864
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 2 cut(s) 209, 352
AfaI GTAC 2 cut(s) 507, 574
AfiI CCNNNNNNNGG 2 cut(s) 167, 601
AgeI ACCGGT 1 cut(s) 404
AgsI TTSAA 2 cut(s) 531, 776
AjnI CCWGG 2 cut(s) 394, 654
AluBI AGCT 4 cut(s) 44, 386, 451, 543
AluI AGCT 4 cut(s) 44, 386, 451, 543
Alw26I GTCTC 2 cut(s) 52, 645
AlwI GGATC 4 cut(s) 179, 307, 591, 864
AlwNI CAGNNNCTG 1 cut(s) 308
AoxI GGCC 5 cut(s) 69, 99, 145, 199, 557
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 2 cut(s) 209, 352
AsiGI ACCGGT 1 cut(s) 404
AspS9I GGNCC 3 cut(s) 70, 146, 402
AsuHPI GGTGA 1 cut(s) 755
AsuII TTCGAA 1 cut(s) 213
AvaII GGWCC 1 cut(s) 402
BalI TGGCCA 1 cut(s) 201
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 1 cut(s) 395
BccI CCATC 4 cut(s) 77, 263, 748, 851
BciT130I CCWGG 2 cut(s) 396, 656
BclI TGATCA 3 cut(s) 475, 766, 796
BcoDI GTCTC 2 cut(s) 52, 645
BfaI CTAG 2 cut(s) 219, 387
BisI GCNGC 1 cut(s) 384
BlsI GCNGC 1 cut(s) 385
BmcAI AGTACT 1 cut(s) 574
Bme1390I CCNGG 2 cut(s) 396, 656
Bme18I GGWCC 1 cut(s) 402
BmgT120I GGNCC 3 cut(s) 70, 146, 402
BmrFI CCNGG 2 cut(s) 396, 656
BmsI GCATC 1 cut(s) 356
Bpu10I CCTNAGC 1 cut(s) 309
Bpu14I TTCGAA 1 cut(s) 213
BpuEI CTTGAG 3 cut(s) 444, 460, 599
BsaBI GATNNNNATC 1 cut(s) 477
BsaI GGTCTC 1 cut(s) 645
BsaJI CCNNGG 4 cut(s) 166, 282, 600, 655
BsaWI WCCGGW 1 cut(s) 404
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 601
Bse118I RCCGGY 2 cut(s) 366, 404
Bse1I ACTGG 1 cut(s) 66
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 2 cut(s) 396, 656
BseDI CCNNGG 4 cut(s) 166, 282, 600, 655
BseGI GGATG 2 cut(s) 759, 841
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 2 cut(s) 167, 601
BseMII CTCAG 1 cut(s) 300
BseNI ACTGG 1 cut(s) 66
BseXI GCAGC 1 cut(s) 395
BsgI GTGCAG 1 cut(s) 658
BshFI GGCC 5 cut(s) 71, 101, 147, 201, 559
BshTI ACCGGT 1 cut(s) 404
BsiSI CCGG 2 cut(s) 367, 405
BslI CCNNNNNNNGG 2 cut(s) 167, 601
BsmAI GTCTC 2 cut(s) 52, 645
BsnI GGCC 5 cut(s) 71, 101, 147, 201, 559
Bso31I GGTCTC 1 cut(s) 645
Bsp119I TTCGAA 1 cut(s) 213
Bsp1407I TGTACA 1 cut(s) 505
Bsp143I GATC 9 cut(s) 171, 299, 475, 583, 617, 663, 766, 796, 856
Bsp19I CCATGG 1 cut(s) 282
BspACI CCGC 2 cut(s) 50, 291
BspANI GGCC 5 cut(s) 71, 101, 147, 201, 559
BspCNI CTCAG 1 cut(s) 301
BspHI TCATGA 1 cut(s) 469
BspPI GGATC 4 cut(s) 179, 307, 591, 864
BspT104I TTCGAA 1 cut(s) 213
BspTNI GGTCTC 1 cut(s) 645
BsrFI RCCGGY 2 cut(s) 366, 404
BsrGI TGTACA 1 cut(s) 505
BsrI ACTGG 1 cut(s) 66
BssAI RCCGGY 2 cut(s) 366, 404
BssECI CCNNGG 4 cut(s) 166, 282, 600, 655
BssMI GATC 9 cut(s) 171, 299, 475, 583, 617, 663, 766, 796, 856
BssT1I CCWWGG 2 cut(s) 282, 600
Bst2UI CCWGG 2 cut(s) 396, 656
Bst4CI ACNGT 2 cut(s) 113, 249
Bst6I CTCTTC 2 cut(s) 199, 289
BstAUI TGTACA 1 cut(s) 505
BstBI TTCGAA 1 cut(s) 213
BstC8I GCNNGC 1 cut(s) 541
BstDEI CTNAG 2 cut(s) 309, 362
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 2 cut(s) 759, 841
BstKTI GATC 9 cut(s) 174, 302, 478, 586, 620, 666, 769, 799, 859
BstMAI GTCTC 2 cut(s) 52, 645
BstMBI GATC 9 cut(s) 171, 299, 475, 583, 617, 663, 766, 796, 856
BstMWI GCNNNNNNNGC 2 cut(s) 77, 441
BstNI CCWGG 2 cut(s) 396, 656
BstSCI CCNGG 2 cut(s) 394, 654
BstV1I GCAGC 1 cut(s) 395
BstX2I RGATCY 1 cut(s) 856
BstYI RGATCY 1 cut(s) 856
BsuRI GGCC 5 cut(s) 71, 101, 147, 201, 559
BtgI CCRYGG 1 cut(s) 282
BtsCI GGATG 2 cut(s) 759, 841
BtsIMutI CAGTG 1 cut(s) 109
Cac8I GCNNGC 1 cut(s) 541
CaiI CAGNNNCTG 1 cut(s) 308
CciI TCATGA 1 cut(s) 469
Cfr10I RCCGGY 2 cut(s) 366, 404
Cfr13I GGNCC 3 cut(s) 70, 146, 402
Csp6I GTAC 2 cut(s) 506, 573
CspAI ACCGGT 1 cut(s) 404
CviAII CATG 6 cut(s) 175, 283, 470, 494, 702, 853
CviQI GTAC 2 cut(s) 506, 573
DdeI CTNAG 2 cut(s) 309, 362
DpnI GATC 9 cut(s) 173, 301, 477, 585, 619, 665, 768, 798, 858
DpnII GATC 9 cut(s) 171, 299, 475, 583, 617, 663, 766, 796, 856
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 2 cut(s) 199, 289
EarI CTCTTC 2 cut(s) 199, 289
EciI GGCGGA 1 cut(s) 39
Eco130I CCWWGG 2 cut(s) 282, 600
Eco31I GGTCTC 1 cut(s) 645
Eco47I GGWCC 1 cut(s) 402
EcoRI GAATTC 1 cut(s) 209
EcoRII CCWGG 2 cut(s) 394, 654
EcoT14I CCWWGG 2 cut(s) 282, 600
ErhI CCWWGG 2 cut(s) 282, 600
FaeI CATG 6 cut(s) 178, 286, 473, 497, 705, 856
FatI CATG 6 cut(s) 174, 282, 469, 493, 701, 852
FbaI TGATCA 3 cut(s) 475, 766, 796
FblI GTMKAC 1 cut(s) 759
Fnu4HI GCNGC 1 cut(s) 384
FokI GGATG 2 cut(s) 766, 848
Fsp4HI GCNGC 1 cut(s) 384
FspBI CTAG 2 cut(s) 219, 387
GluI GCNGC 1 cut(s) 384
HaeIII GGCC 5 cut(s) 71, 101, 147, 201, 559
HapII CCGG 2 cut(s) 367, 405
Hin1II CATG 6 cut(s) 178, 286, 473, 497, 705, 856
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 4 cut(s) 17, 224, 839, 872
HpaII CCGG 2 cut(s) 367, 405
HphI GGTGA 1 cut(s) 755
Hpy166II GTNNAC 2 cut(s) 760, 808
Hpy188I TCNGA 8 cut(s) 7, 22, 181, 255, 483, 518, 672, 871
Hpy188III TCNNGA 5 cut(s) 461, 470, 578, 751, 800
Hpy8I GTNNAC 2 cut(s) 760, 808
HpyAV CCTTC 4 cut(s) 330, 393, 537, 716
HpyCH4III ACNGT 2 cut(s) 113, 249
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 4 cut(s) 319, 383, 497, 639
HpyF10VI GCNNNNNNNGC 2 cut(s) 77, 441
HpyF3I CTNAG 2 cut(s) 309, 362
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 6 cut(s) 178, 286, 473, 497, 705, 856
Ksp22I TGATCA 3 cut(s) 475, 766, 796
Kzo9I GATC 9 cut(s) 171, 299, 475, 583, 617, 663, 766, 796, 856
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 1 cut(s) 356
MaeI CTAG 2 cut(s) 219, 387
MaeII ACGT 1 cut(s) 184
MalI GATC 9 cut(s) 173, 301, 477, 585, 619, 665, 768, 798, 858
MboI GATC 9 cut(s) 171, 299, 475, 583, 617, 663, 766, 796, 856
MboII GAAGA 9 cut(s) 20, 26, 186, 306, 338, 430, 496, 725, 867
MflI RGATCY 1 cut(s) 856
MlsI TGGCCA 1 cut(s) 201
MluCI AATT 4 cut(s) 209, 352, 430, 770
MluNI TGGCCA 1 cut(s) 201
MlyI GAGTC 2 cut(s) 833, 866
Mox20I TGGCCA 1 cut(s) 201
MscI TGGCCA 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 201
MspI CCGG 2 cut(s) 367, 405
MspR9I CCNGG 2 cut(s) 396, 656
MvaI CCWGG 2 cut(s) 396, 656
MwoI GCNNNNNNNGC 2 cut(s) 77, 441
NcoI CCATGG 1 cut(s) 282
NdeII GATC 9 cut(s) 171, 299, 475, 583, 617, 663, 766, 796, 856
NlaIII CATG 6 cut(s) 178, 286, 473, 497, 705, 856
NmeAIII GCCGAG 1 cut(s) 191
NspV TTCGAA 1 cut(s) 213
PagI TCATGA 1 cut(s) 469
PfeI GAWTC 2 cut(s) 17, 224
PflMI CCANNNNNTGG 1 cut(s) 601
PfoI TCCNGGA 1 cut(s) 394
PinAI ACCGGT 1 cut(s) 404
PkrI GCNGC 1 cut(s) 385
PleI GAGTC 2 cut(s) 833, 866
PpsI GAGTC 2 cut(s) 833, 866
Psp1406I AACGTT 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 394, 654
PspGI CCWGG 2 cut(s) 394, 654
PspPI GGNCC 3 cut(s) 70, 146, 402
PstNI CAGNNNCTG 1 cut(s) 308
PsuI RGATCY 1 cut(s) 856
RsaI GTAC 2 cut(s) 507, 574
RsaNI GTAC 2 cut(s) 506, 573
SatI GCNGC 1 cut(s) 384
Sau3AI GATC 9 cut(s) 171, 299, 475, 583, 617, 663, 766, 796, 856
Sau96I GGNCC 3 cut(s) 70, 146, 402
ScaI AGTACT 1 cut(s) 574
SchI GAGTC 2 cut(s) 833, 866
ScrFI CCNGG 2 cut(s) 396, 656
SfaNI GCATC 1 cut(s) 356
SfuI TTCGAA 1 cut(s) 213
SinI GGWCC 1 cut(s) 402
SmlI CTYRAG 3 cut(s) 439, 459, 578
SmoI CTYRAG 3 cut(s) 439, 459, 578
Sse9I AATT 4 cut(s) 209, 352, 430, 770
SsiI CCGC 2 cut(s) 50, 291
SspMI CTAG 2 cut(s) 219, 387
StyD4I CCNGG 2 cut(s) 394, 654
StyI CCWWGG 2 cut(s) 282, 600
TaaI ACNGT 2 cut(s) 113, 249
TaiI ACGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 213
TaqII GACCGA 1 cut(s) 656
TasI AATT 4 cut(s) 209, 352, 430, 770
TatI WGTACW 2 cut(s) 505, 572
TfiI GAWTC 2 cut(s) 17, 224
TscAI CASTG 1 cut(s) 116
TseI GCWGC 1 cut(s) 383
TspDTI ATGAA 4 cut(s) 27, 216, 727, 867
TspGWI ACGGA 1 cut(s) 150
TspRI CASTG 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 601
VpaK11BI GGWCC 1 cut(s) 402
XapI RAATTY 2 cut(s) 209, 352
XcmI CCANNNNNNNNNTGG 2 cut(s) 80, 850
XmiI GTMKAC 1 cut(s) 759
XspI CTAG 2 cut(s) 219, 387
ZrmI AGTACT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.