RchiOBHm_Chr4g0415831
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000402
Physical Location & Seq
Reverse (-)
40666733 .. 40667327
595 bp
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UTR
Exon/CDS
Intron
PRQ38602

Sequence Viewer

Length: 366 bp
ATGGAGTTGAGAAAAGGTGCATGGACCAAAGAGGAAGATCATCTTCTCAGGAAGTGCATTGAAAAACATGGAGAAGGAAGATGGCACAAGATTCCTCTCCAAGCAGGCTTAAAGAGATGCAGAAAGAGCTGTAGAATGAGGTGGTTGAATTACCTTAAGCCAACCATCAAGAGAGGAGAATTTGAAGATGATGAAGTAGATCTAATGATTAGGCTTTACAAGCTTTTAGGAAACAGGCAAGGACTACATACTACTGATCGATTTCTCTATAACATACTAATTAAGTTCCGGGCCAATAAGGTCAAAAAAAAAAAAAAAAAAAATCTTTTCTGCCCTTTCAAACACGAAAAGAAAAATTTCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

121

Amino Acids

14.76

Weight (kDa)

10.09

Isoelectric Point (pI)

41.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 52 1.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 8 - 67 8.2e-14 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 179, 355
AflII CTTAAG 1 cut(s) 155
AgsI TTSAA 4 cut(s) 62, 148, 185, 340
AluBI AGCT 2 cut(s) 129, 223
AluI AGCT 2 cut(s) 129, 223
AoxI GGCC 1 cut(s) 291
ApoI RAATTY 2 cut(s) 179, 355
Asp700I GAANNNNTTC 1 cut(s) 356
AspS9I GGNCC 2 cut(s) 24, 291
AsuC2I CCSGG 1 cut(s) 290
AvaII GGWCC 1 cut(s) 24
BccI CCATC 2 cut(s) 75, 173
BcnI CCSGG 1 cut(s) 290
BfmI CTRYAG 1 cut(s) 130
BfrI CTTAAG 1 cut(s) 155
BglII AGATCT 1 cut(s) 199
Bme1390I CCNGG 1 cut(s) 290
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 2 cut(s) 24, 291
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 1 cut(s) 107
BpuMI CCSGG 1 cut(s) 290
Bsa29I ATCGAT 1 cut(s) 259
BseCI ATCGAT 1 cut(s) 259
BseMII CTCAG 1 cut(s) 61
BseRI GAGGAG 1 cut(s) 189
BshFI GGCC 1 cut(s) 293
BshVI ATCGAT 1 cut(s) 259
BsiSI CCGG 1 cut(s) 289
BsnI GGCC 1 cut(s) 293
Bsp143I GATC 3 cut(s) 37, 199, 256
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 60
BspDI ATCGAT 1 cut(s) 259
BspTI CTTAAG 1 cut(s) 155
BssMI GATC 3 cut(s) 37, 199, 256
BstAFI CTTAAG 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 47
BstKTI GATC 3 cut(s) 40, 202, 259
BstMBI GATC 3 cut(s) 37, 199, 256
BstMWI GCNNNNNNNGC 2 cut(s) 126, 220
BstSCI CCNGG 1 cut(s) 288
BstSFI CTRYAG 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 259
BsuRI GGCC 1 cut(s) 293
BsuTUI ATCGAT 1 cut(s) 259
Cac8I GCNNGC 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 24, 291
ClaI ATCGAT 1 cut(s) 259
CviAII CATG 2 cut(s) 21, 68
CviJI RGCY 6 cut(s) 108, 129, 160, 214, 223, 293
CviKI_1 RGCY 6 cut(s) 108, 129, 160, 214, 223, 293
DdeI CTNAG 1 cut(s) 47
DpnI GATC 3 cut(s) 39, 201, 258
DpnII GATC 3 cut(s) 37, 199, 256
Eco47I GGWCC 1 cut(s) 24
FaeI CATG 2 cut(s) 24, 71
FaiI YATR 5 cut(s) 22, 69, 249, 270, 275
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 2 cut(s) 20, 67
HaeIII GGCC 1 cut(s) 293
HapII CCGG 1 cut(s) 289
Hin1II CATG 2 cut(s) 24, 71
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 1 cut(s) 91
HpaII CCGG 1 cut(s) 289
Hpy188III TCNNGA 2 cut(s) 49, 169
HpyAV CCTTC 1 cut(s) 68
HpyCH4V TGCA 3 cut(s) 20, 57, 120
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 220
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 2 cut(s) 24, 71
Kzo9I GATC 3 cut(s) 37, 199, 256
LpnPI CCDG 4 cut(s) 34, 90, 220, 302
LweI GCATC 1 cut(s) 107
MalI GATC 3 cut(s) 39, 201, 258
MboI GATC 3 cut(s) 37, 199, 256
MboII GAAGA 4 cut(s) 35, 47, 90, 197
MflI RGATCY 1 cut(s) 199
MluCI AATT 4 cut(s) 148, 179, 279, 355
MnlI CCTC 4 cut(s) 25, 105, 132, 167
MroXI GAANNNNTTC 1 cut(s) 356
MseI TTAA 4 cut(s) 110, 156, 282, 364
MspCI CTTAAG 1 cut(s) 155
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 290
MwoI GCNNNNNNNGC 2 cut(s) 126, 220
NciI CCSGG 1 cut(s) 290
NdeII GATC 3 cut(s) 37, 199, 256
NlaIII CATG 2 cut(s) 24, 71
PdmI GAANNNNTTC 1 cut(s) 356
PfeI GAWTC 1 cut(s) 91
PspPI GGNCC 2 cut(s) 24, 291
PsuI RGATCY 1 cut(s) 199
SaqAI TTAA 4 cut(s) 110, 156, 282, 364
Sau3AI GATC 3 cut(s) 37, 199, 256
Sau96I GGNCC 2 cut(s) 24, 291
ScrFI CCNGG 1 cut(s) 290
SetI ASST 6 cut(s) 19, 131, 143, 156, 225, 303
SfaNI GCATC 1 cut(s) 107
SfcI CTRYAG 1 cut(s) 130
SinI GGWCC 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 4 cut(s) 148, 179, 279, 355
StyD4I CCNGG 1 cut(s) 288
TaqI TCGA 1 cut(s) 259
TasI AATT 4 cut(s) 148, 179, 279, 355
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 4 cut(s) 110, 156, 282, 364
Tru9I TTAA 4 cut(s) 110, 156, 282, 364
TspDTI ATGAA 1 cut(s) 207
Vha464I CTTAAG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 2 cut(s) 179, 355
XmnI GAANNNNTTC 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.