Rroxscaffold_6G00392130
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000402
Physical Location & Seq
Reverse (-)
11310112 .. 11311959
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00392130.1

Sequence Viewer

Length: 756 bp
ATGGATGGGGCTTGTAACAACAACTTGGGTGTGAGAAAAGGTGCTTGGACTAGAGAGGAGGATGAGCTTCTCAGGCATTGCATGAAGACCCATGGAGAAGAAAAGTGGCACCAGGTTCCGTCCAAAGCAGGTTTGAACAGATGCAGGAAGAGCTGCAGACTAAGGTGGCTCAACTATCTGAAGCCAAACATCAAAAGAGGTGGCTTTACGGAGGATGAAACTGATCTAATATTTAGGCTTCACAAGCTTTTGGGAAACAGGTGGTCATTAATTGCTGGAAGACTTCCCGGACGAACTGGAAACGATGTGAAAAATTACTGGAACTCCCGACTACGACTAGATTCTCGAAGTAAAAAATATAAATCTCCAGAATCTATGAAGACCACAATAATAAGGCCTCGACCACGAACCTTCTCCAAAAGTTTGTATCCTTTGAACAAGACAAATACAATTTTAAAACCTTTTCAATTTGAAGAGAATTTTGGCCGCTCAACACAAGCATCACCAACTTCAGAGAATGAAATTGACTCGCCGAAAACCATTTTAGATTTCACGGATAGTGGCACTGTTGAAAGAAGCACAAGTGATTCTTGTCGTCTGGGGTTCGAGGAAGACCTCTTCACAAACTTTTGGGTTGAAGATATGGTAGAATCATCAAGAACATGTTTCTCATTTACTGAAGGAGAAGTAAGTAACGTAGACGTCTGTTTCAATATGGAACTCTGGAATCATCCACAAGAAGAAGAGAAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

251

Amino Acids

29.23

Weight (kDa)

8.64

Isoelectric Point (pI)

61.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 4.5e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 74 5.3e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 66 - 110 8.8e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 69 - 118 5.3e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 705
Acc36I ACCTGC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 108
AccBSI CCGCTC 1 cut(s) 489
AccI GTMKAC 1 cut(s) 699
AciI CCGC 1 cut(s) 487
AcoI YGGCCR 1 cut(s) 484
AcsI RAATTY 1 cut(s) 478
AcuI CTGAAG 3 cut(s) 200, 495, 699
AcyI GRCGYC 1 cut(s) 702
AflIII ACRYGT 1 cut(s) 662
AgsI TTSAA 7 cut(s) 136, 436, 467, 473, 572, 638, 712
AjnI CCWGG 1 cut(s) 111
AjuI GAANNNNNNNTTGG 4 cut(s) 28, 60, 465, 497
AluBI AGCT 3 cut(s) 67, 153, 247
AluI AGCT 3 cut(s) 67, 153, 247
AoxI GGCC 2 cut(s) 395, 484
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 478
AseI ATTAAT 1 cut(s) 269
AsuC2I CCSGG 1 cut(s) 288
AsuHPI GGTGA 1 cut(s) 495
BanI GGYRCC 1 cut(s) 108
BbsI GAAGAC 4 cut(s) 92, 286, 386, 618
BbvI GCAGC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 113
BciVI GTATCC 1 cut(s) 438
BcnI CCSGG 1 cut(s) 288
BfaI CTAG 2 cut(s) 51, 338
BfmI CTRYAG 1 cut(s) 154
BfuAI ACCTGC 1 cut(s) 119
BfuI GTATCC 1 cut(s) 438
BisI GCNGC 2 cut(s) 154, 487
BlsI GCNGC 2 cut(s) 155, 488
Bme1390I CCNGG 2 cut(s) 113, 288
BmiI GGNNCC 2 cut(s) 110, 117
BmrFI CCNGG 2 cut(s) 113, 288
BmsI GCATC 2 cut(s) 131, 509
BpiI GAAGAC 4 cut(s) 92, 286, 386, 618
BpmI CTGGAG 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 288
BsaHI GRCGYC 1 cut(s) 702
BsaJI CCNNGG 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bse1I ACTGG 2 cut(s) 301, 323
Bse3DI GCAATG 1 cut(s) 76
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 4 cut(s) 10, 67, 220, 730
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 301, 323
BseRI GAGGAG 1 cut(s) 71
BseXI GCAGC 1 cut(s) 140
BshFI GGCC 2 cut(s) 397, 486
BshNI GGYRCC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 288
BsnI GGCC 2 cut(s) 397, 486
Bsp143I GATC 1 cut(s) 223
Bsp19I CCATGG 1 cut(s) 91
BspACI CCGC 1 cut(s) 487
BspANI GGCC 2 cut(s) 397, 486
BspCNI CTCAG 1 cut(s) 84
BspLI GGNNCC 2 cut(s) 110, 117
BspMAI CTGCAG 1 cut(s) 158
BspMI ACCTGC 1 cut(s) 119
BspQI GCTCTTC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 76
BsrI ACTGG 2 cut(s) 301, 323
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 1 cut(s) 223
BssNI GRCGYC 1 cut(s) 702
BssT1I CCWWGG 1 cut(s) 91
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 568
Bst6I CTCTTC 4 cut(s) 143, 468, 623, 738
BstACI GRCGYC 1 cut(s) 702
BstDEI CTNAG 2 cut(s) 71, 161
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 4 cut(s) 10, 67, 220, 730
BstKTI GATC 1 cut(s) 226
BstMBI GATC 1 cut(s) 223
BstMWI GCNNNNNNNGC 3 cut(s) 73, 150, 244
BstNI CCWGG 1 cut(s) 113
BstNSI RCATGY 1 cut(s) 666
BstSCI CCNGG 2 cut(s) 111, 286
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 4 cut(s) 92, 286, 386, 618
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 2 cut(s) 397, 486
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 4 cut(s) 10, 67, 220, 730
BtsIMutI CAGTG 1 cut(s) 564
BveI ACCTGC 1 cut(s) 119
CsiI ACCWGGT 1 cut(s) 111
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 4 cut(s) 82, 92, 663, 753
DdeI CTNAG 2 cut(s) 71, 161
DpnI GATC 1 cut(s) 225
DpnII GATC 1 cut(s) 223
DraI TTTAAA 1 cut(s) 456
EaeI YGGCCR 1 cut(s) 484
Eam1104I CTCTTC 4 cut(s) 143, 468, 623, 738
EarI CTCTTC 4 cut(s) 143, 468, 623, 738
Eco130I CCWWGG 1 cut(s) 91
Eco147I AGGCCT 1 cut(s) 397
Eco57I CTGAAG 3 cut(s) 200, 495, 699
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 91
ErhI CCWWGG 1 cut(s) 91
FaeI CATG 4 cut(s) 85, 95, 666, 756
FaiI YATR 8 cut(s) 83, 93, 360, 377, 644, 664, 716, 754
FalI AAGNNNNNCTT 2 cut(s) 574, 606
FatI CATG 4 cut(s) 81, 91, 662, 752
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 2 cut(s) 154, 487
FokI GGATG 4 cut(s) 17, 74, 227, 717
Fsp4HI GCNGC 2 cut(s) 154, 487
FspBI CTAG 2 cut(s) 51, 338
GluI GCNGC 2 cut(s) 154, 487
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 2 cut(s) 397, 486
HapII CCGG 1 cut(s) 288
Hin1I GRCGYC 1 cut(s) 702
Hin1II CATG 4 cut(s) 85, 95, 666, 756
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 6 cut(s) 341, 371, 527, 587, 650, 727
HpaII CCGG 1 cut(s) 288
HphI GGTGA 1 cut(s) 495
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 2 cut(s) 180, 514
Hpy188III TCNNGA 5 cut(s) 327, 345, 368, 657, 724
Hpy8I GTNNAC 1 cut(s) 700
HpyAV CCTTC 2 cut(s) 421, 674
HpyCH4III ACNGT 1 cut(s) 568
HpyCH4IV ACGT 2 cut(s) 696, 702
HpyCH4V TGCA 3 cut(s) 81, 144, 156
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 150, 244
HpyF3I CTNAG 2 cut(s) 71, 161
HpySE526I ACGT 2 cut(s) 696, 702
Hsp92I GRCGYC 1 cut(s) 702
Hsp92II CATG 4 cut(s) 85, 95, 666, 756
Kzo9I GATC 1 cut(s) 223
LguI GCTCTTC 1 cut(s) 143
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 2 cut(s) 131, 509
MabI ACCWGGT 1 cut(s) 111
MaeI CTAG 2 cut(s) 51, 338
MaeII ACGT 2 cut(s) 696, 702
MaeIII GTNAC 2 cut(s) 14, 692
MalI GATC 1 cut(s) 225
MbiI CCGCTC 1 cut(s) 489
MboI GATC 1 cut(s) 223
MluCI AATT 6 cut(s) 270, 313, 450, 467, 478, 522
MlyI GAGTC 1 cut(s) 521
MnlI CCTC 7 cut(s) 49, 52, 191, 205, 408, 601, 626
MseI TTAA 2 cut(s) 269, 455
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 113, 288
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 73, 150, 244
NciI CCSGG 1 cut(s) 288
NcoI CCATGG 1 cut(s) 91
NdeII GATC 1 cut(s) 223
NlaIII CATG 4 cut(s) 85, 95, 666, 756
NlaIV GGNNCC 2 cut(s) 110, 117
NspI RCATGY 1 cut(s) 666
PceI AGGCCT 1 cut(s) 397
PciI ACATGT 1 cut(s) 662
PciSI GCTCTTC 1 cut(s) 143
PfeI GAWTC 5 cut(s) 341, 371, 587, 650, 727
PfoI TCCNGGA 1 cut(s) 286
PkrI GCNGC 2 cut(s) 155, 488
PleI GAGTC 1 cut(s) 521
PpsI GAGTC 1 cut(s) 521
PscI ACATGT 1 cut(s) 662
PshBI ATTAAT 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 2 cut(s) 110, 117
PstI CTGCAG 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 269, 455
SatI GCNGC 2 cut(s) 154, 487
Sau3AI GATC 1 cut(s) 223
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 2 cut(s) 113, 288
SexAI ACCWGGT 1 cut(s) 111
SfaNI GCATC 2 cut(s) 131, 509
SfcI CTRYAG 1 cut(s) 154
Sse9I AATT 6 cut(s) 270, 313, 450, 467, 478, 522
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 1 cut(s) 487
SspI AATATT 1 cut(s) 231
SspMI CTAG 2 cut(s) 51, 338
StuI AGGCCT 1 cut(s) 397
StyD4I CCNGG 2 cut(s) 111, 286
StyI CCWWGG 1 cut(s) 91
TaaI ACNGT 1 cut(s) 568
TaiI ACGT 2 cut(s) 699, 705
TaqI TCGA 3 cut(s) 346, 400, 606
TasI AATT 6 cut(s) 270, 313, 450, 467, 478, 522
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 5 cut(s) 341, 371, 587, 650, 727
Tru1I TTAA 2 cut(s) 269, 455
Tru9I TTAA 2 cut(s) 269, 455
TscAI CASTG 1 cut(s) 571
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 4 cut(s) 98, 231, 392, 534
TspGWI ACGGA 3 cut(s) 108, 224, 569
TspRI CASTG 1 cut(s) 571
VspI ATTAAT 1 cut(s) 269
XapI RAATTY 1 cut(s) 478
XceI RCATGY 1 cut(s) 666
XmiI GTMKAC 1 cut(s) 699
XspI CTAG 2 cut(s) 51, 338
ZraI GACGTC 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.