MD04G1235800.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000402
Physical Location & Seq
Forward (+)
31469427 .. 31471913
2487 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1235800.v1.1.491

Sequence Viewer

Length: 762 bp
ATGGGTGGCATTCCATGGACTAAGGAAGAGGATCAATTGCTCAGGAAATGCATAGAGCAGCATGGAGAAGGCAAATGGCATCGTCTTCCTCTCTTGGCTGGTCTAAACAGGTGCCGCAAGAGCTGTAGGCTGAGGTGGTTAAACTACCTCCGCCCAAACATCAAAAGAGGAAACTTTGAAGAAGAGGAAGTTGATCTCATCATCAAGCTCCACAGGCTCCTGGGAAACAGGTGGTCATCGGTTGCAGCCAGACTTCCGGGAAGGACCGGTAACGATGTGAAGAACTACTGGAATTGTCACTTGAGCAAAAGGCTAAACGCTCAGCAAGATCATCAAAGTGAATATCATATTAAGAACAAGCATGATGCAGTTAGGAACATTAATAATGGTGTAAAAGTCATAAGATCCCAAGCTTCAAACTCTGCAGGTACAAGCAGCTCAAAGAGGCCGTCATATGCACCAACTCCTCATCAACCAGTTAATGTATTTGTACAAGAGGAAGGTAGCAGCACAGGGCCAAAGCCAAAGCTATGCAATTTTAATGGAAATGGTCAGAATAATAATCAGATATTTGAGAATAATAATAATAATAATAATAGTACTGGGATTAATGCGAGTGACTATCCAATGGATGATGACCTTCCACCATTTGATCAACAAGTTAAAGAATATCATCAAGGTGGCGATGATGGAGATCAGGTCAACAGAAAATGGGAGTGGGACGACTCCATCTTTGCCGACATGGACCTCTGGACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

254

Amino Acids

29.05

Weight (kDa)

7.7

Isoelectric Point (pI)

51.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 50 9.7e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 6 - 64 3.8e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 56 - 100 1.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 59 - 115 2.1e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 416
AccB1I GGYRCC 1 cut(s) 111
AciI CCGC 2 cut(s) 115, 151
AclWI GGATC 2 cut(s) 39, 399
AfaI GTAC 3 cut(s) 430, 492, 601
AgeI ACCGGT 1 cut(s) 266
AgsI TTSAA 2 cut(s) 179, 417
AjnI CCWGG 1 cut(s) 219
AluBI AGCT 5 cut(s) 123, 208, 413, 438, 529
AluI AGCT 5 cut(s) 123, 208, 413, 438, 529
AlwI GGATC 2 cut(s) 39, 399
AoxI GGCC 2 cut(s) 446, 515
ApeKI GCWGC 4 cut(s) 58, 245, 435, 507
ArsI GACNNNNNNTTYG 4 cut(s) 434, 466, 716, 748
AseI ATTAAT 2 cut(s) 381, 609
AsiGI ACCGGT 1 cut(s) 266
AspS9I GGNCC 3 cut(s) 264, 515, 745
AsuC2I CCSGG 1 cut(s) 258
AvaII GGWCC 2 cut(s) 264, 745
BanI GGYRCC 1 cut(s) 111
BbsI GAAGAC 1 cut(s) 77
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 4 cut(s) 70, 257, 447, 519
BccI CCATC 2 cut(s) 683, 737
BceAI ACGGC 1 cut(s) 433
BciT130I CCWGG 1 cut(s) 221
BclI TGATCA 1 cut(s) 652
BcnI CCSGG 1 cut(s) 258
BfmI CTRYAG 2 cut(s) 124, 423
BfuAI ACCTGC 1 cut(s) 416
BisI GCNGC 5 cut(s) 59, 115, 246, 436, 508
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 5 cut(s) 60, 116, 247, 437, 509
BmcAI AGTACT 1 cut(s) 601
Bme1390I CCNGG 2 cut(s) 221, 258
Bme18I GGWCC 2 cut(s) 264, 745
BmgT120I GGNCC 3 cut(s) 264, 515, 745
BmiI GGNNCC 2 cut(s) 113, 218
BmrFI CCNGG 2 cut(s) 221, 258
BmrI ACTGGG 1 cut(s) 612
BmsI GCATC 2 cut(s) 88, 355
BmuI ACTGGG 1 cut(s) 612
BpiI GAAGAC 1 cut(s) 77
Bpu10I CCTNAGC 2 cut(s) 41, 131
Bpu1102I GCTNAGC 1 cut(s) 321
BpuEI CTTGAG 1 cut(s) 322
BpuMI CCSGG 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 693
BsaJI CCNNGG 2 cut(s) 14, 220
BsaWI WCCGGW 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 684, 714
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 3 cut(s) 293, 476, 607
Bse8I GATNNNNATC 1 cut(s) 693
BseBI CCWGG 1 cut(s) 221
BseDI CCNNGG 2 cut(s) 14, 220
BseGI GGATG 1 cut(s) 637
BseJI GATNNNNATC 1 cut(s) 693
BseMII CTCAG 3 cut(s) 55, 122, 335
BseNI ACTGG 3 cut(s) 293, 476, 607
BseRI GAGGAG 1 cut(s) 456
BseXI GCAGC 4 cut(s) 70, 257, 447, 519
BshFI GGCC 2 cut(s) 448, 517
BshNI GGYRCC 1 cut(s) 111
BshTI ACCGGT 1 cut(s) 266
BsiSI CCGG 2 cut(s) 257, 267
BslFI GGGAC 1 cut(s) 734
BsmFI GGGAC 1 cut(s) 734
BsmI GAATGC 1 cut(s) 9
BsnI GGCC 2 cut(s) 448, 517
Bsp1407I TGTACA 1 cut(s) 490
Bsp143I GATC 6 cut(s) 31, 193, 328, 404, 652, 694
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 1 cut(s) 14
BspACI CCGC 2 cut(s) 115, 151
BspANI GGCC 2 cut(s) 448, 517
BspCNI CTCAG 3 cut(s) 54, 123, 334
BspLI GGNNCC 2 cut(s) 113, 218
BspMAI CTGCAG 1 cut(s) 427
BspMI ACCTGC 1 cut(s) 416
BspPI GGATC 2 cut(s) 39, 399
BspT107I GGYRCC 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 266
BsrGI TGTACA 1 cut(s) 490
BsrI ACTGG 3 cut(s) 293, 476, 607
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 14, 220
BssMI GATC 6 cut(s) 31, 193, 328, 404, 652, 694
BssT1I CCWWGG 1 cut(s) 14
Bst2UI CCWGG 1 cut(s) 221
Bst6I CTCTTC 2 cut(s) 21, 177
BstAUI TGTACA 1 cut(s) 490
BstDEI CTNAG 4 cut(s) 21, 41, 131, 321
BstDSI CCRYGG 1 cut(s) 14
BstF5I GGATG 1 cut(s) 637
BstKTI GATC 6 cut(s) 34, 196, 331, 407, 655, 697
BstMBI GATC 6 cut(s) 31, 193, 328, 404, 652, 694
BstMWI GCNNNNNNNGC 2 cut(s) 120, 214
BstNI CCWGG 1 cut(s) 221
BstSCI CCNGG 2 cut(s) 219, 256
BstSFI CTRYAG 2 cut(s) 124, 423
BstV1I GCAGC 4 cut(s) 70, 257, 447, 519
BstV2I GAAGAC 1 cut(s) 77
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 2 cut(s) 448, 517
BtgI CCRYGG 1 cut(s) 14
BtgZI GCGATG 1 cut(s) 699
BtsCI GGATG 1 cut(s) 637
BveI ACCTGC 1 cut(s) 416
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 3 cut(s) 264, 515, 745
Csp6I GTAC 3 cut(s) 429, 491, 600
CspAI ACCGGT 1 cut(s) 266
CviAII CATG 4 cut(s) 15, 62, 362, 742
CviQI GTAC 3 cut(s) 429, 491, 600
DdeI CTNAG 4 cut(s) 21, 41, 131, 321
DpnI GATC 6 cut(s) 33, 195, 330, 406, 654, 696
DpnII GATC 6 cut(s) 31, 193, 328, 404, 652, 694
Eam1104I CTCTTC 2 cut(s) 21, 177
EarI CTCTTC 2 cut(s) 21, 177
EciI GGCGGA 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 14
Eco47I GGWCC 2 cut(s) 264, 745
EcoRII CCWGG 1 cut(s) 219
EcoT14I CCWWGG 1 cut(s) 14
EcoT22I ATGCAT 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 14
FaeI CATG 4 cut(s) 18, 65, 365, 745
FaqI GGGAC 1 cut(s) 734
FatI CATG 4 cut(s) 14, 61, 361, 741
FauNDI CATATG 1 cut(s) 454
FbaI TGATCA 1 cut(s) 652
Fnu4HI GCNGC 5 cut(s) 59, 115, 246, 436, 508
FokI GGATG 1 cut(s) 644
Fsp4HI GCNGC 5 cut(s) 59, 115, 246, 436, 508
GluI GCNGC 5 cut(s) 59, 115, 246, 436, 508
HaeIII GGCC 2 cut(s) 448, 517
HapII CCGG 2 cut(s) 257, 267
Hin1II CATG 4 cut(s) 18, 65, 365, 745
HincII GTYRAC 1 cut(s) 703
HindII GTYRAC 1 cut(s) 703
HindIII AAGCTT 1 cut(s) 411
HinfI GANTC 1 cut(s) 725
HpaII CCGG 2 cut(s) 257, 267
Hpy166II GTNNAC 1 cut(s) 703
Hpy188I TCNGA 2 cut(s) 555, 567
Hpy188III TCNNGA 2 cut(s) 43, 751
Hpy8I GTNNAC 1 cut(s) 703
HpyAV CCTTC 4 cut(s) 62, 255, 494, 650
HpyCH4V TGCA 6 cut(s) 51, 245, 368, 425, 458, 534
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 214
HpyF3I CTNAG 4 cut(s) 21, 41, 131, 321
Hsp92II CATG 4 cut(s) 18, 65, 365, 745
Ksp22I TGATCA 1 cut(s) 652
Kzo9I GATC 6 cut(s) 31, 193, 328, 404, 652, 694
LmnI GCTCC 2 cut(s) 213, 222
Lsp1109I GCAGC 4 cut(s) 70, 257, 447, 519
LweI GCATC 2 cut(s) 88, 355
MaeIII GTNAC 3 cut(s) 269, 296, 617
MalI GATC 6 cut(s) 33, 195, 330, 406, 654, 696
MboI GATC 6 cut(s) 31, 193, 328, 404, 652, 694
MboII GAAGA 5 cut(s) 38, 77, 191, 194, 292
MfeI CAATTG 1 cut(s) 35
MflI RGATCY 1 cut(s) 404
MluCI AATT 3 cut(s) 35, 292, 535
MlyI GAGTC 1 cut(s) 719
Mph1103I ATGCAT 1 cut(s) 53
MseI TTAA 8 cut(s) 140, 351, 381, 480, 540, 609, 663, 760
MslI CAYNNNNRTG 2 cut(s) 336, 678
MspI CCGG 2 cut(s) 257, 267
MspR9I CCNGG 2 cut(s) 221, 258
MunI CAATTG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 9
MvaI CCWGG 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 120, 214
NciI CCSGG 1 cut(s) 258
NcoI CCATGG 1 cut(s) 14
NdeI CATATG 1 cut(s) 454
NdeII GATC 6 cut(s) 31, 193, 328, 404, 652, 694
NlaIII CATG 4 cut(s) 18, 65, 365, 745
NlaIV GGNNCC 2 cut(s) 113, 218
NmuCI GTSAC 2 cut(s) 296, 617
NsiI ATGCAT 1 cut(s) 53
PctI GAATGC 1 cut(s) 9
PfoI TCCNGGA 1 cut(s) 256
PinAI ACCGGT 1 cut(s) 266
PkrI GCNGC 5 cut(s) 60, 116, 247, 437, 509
PleI GAGTC 1 cut(s) 719
PpsI GAGTC 1 cut(s) 719
PshBI ATTAAT 2 cut(s) 381, 609
Psp6I CCWGG 1 cut(s) 219
PspGI CCWGG 1 cut(s) 219
PspN4I GGNNCC 2 cut(s) 113, 218
PspPI GGNCC 3 cut(s) 264, 515, 745
PstI CTGCAG 1 cut(s) 427
PsuI RGATCY 1 cut(s) 404
RsaI GTAC 3 cut(s) 430, 492, 601
RsaNI GTAC 3 cut(s) 429, 491, 600
RseI CAYNNNNRTG 2 cut(s) 336, 678
SaqAI TTAA 8 cut(s) 140, 351, 381, 480, 540, 609, 663, 760
SatI GCNGC 5 cut(s) 59, 115, 246, 436, 508
Sau3AI GATC 6 cut(s) 31, 193, 328, 404, 652, 694
Sau96I GGNCC 3 cut(s) 264, 515, 745
ScaI AGTACT 1 cut(s) 601
SchI GAGTC 1 cut(s) 719
ScrFI CCNGG 2 cut(s) 221, 258
SfaNI GCATC 2 cut(s) 88, 355
SfcI CTRYAG 2 cut(s) 124, 423
SinI GGWCC 2 cut(s) 264, 745
SmiMI CAYNNNNRTG 2 cut(s) 336, 678
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 3 cut(s) 35, 292, 535
SsiI CCGC 2 cut(s) 115, 151
StyD4I CCNGG 2 cut(s) 219, 256
StyI CCWWGG 1 cut(s) 14
TasI AATT 3 cut(s) 35, 292, 535
TatI WGTACW 2 cut(s) 490, 599
TauI GCSGC 1 cut(s) 117
Tru1I TTAA 8 cut(s) 140, 351, 381, 480, 540, 609, 663, 760
Tru9I TTAA 8 cut(s) 140, 351, 381, 480, 540, 609, 663, 760
TseFI GTSAC 2 cut(s) 296, 617
TseI GCWGC 4 cut(s) 58, 245, 435, 507
Tsp45I GTSAC 2 cut(s) 296, 617
VpaK11BI GGWCC 2 cut(s) 264, 745
VspI ATTAAT 2 cut(s) 381, 609
ZrmI AGTACT 1 cut(s) 601
Zsp2I ATGCAT 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.