Rh3AG305900
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000402
Physical Location & Seq
Forward (+)
37992985 .. 37995467
2483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG305900.1

Sequence Viewer

Length: 756 bp
ATGGATGGGGCTTGTAACAACAACTTGGGTGTGAGAAAAGGTGCTTGGACTAGAGAGGAAGATGATCTTCTCAGGCATTGCATGAAGACTCATGGAGAAGAAAAGTGGCACCGGGTTCCTTCCAAAGCAGGTTTGAACAGATGCAGGAAAAGCTGCAGACTAAGGTGGCTCAACTATCTGAAGCCAAACATCAAAAGAGGTGGCTTTACGGAGGATGAAACTGATCTAATATTTAGGCTTCACAAGCTTTTGGGAAACAGGTGGTCATTAATTGCTGGAAGACTTTCCGGACGAACTGGAAACGATGTGAAAAATTACTGGAACTCCCGACTACGGCTAGATTCTCGAATTAAAAATCATAAATCTCCAGAATCTATAAAGACCACAATAATAAGGCCTCGACCACGAACCTTCTCCAAAAGTTTGTATCCTTTGAACAAGAGAGCTACAATTTTAAAACCTTTTCAATTTGAAGAGAATTTTGGCCGCTCAACACAAGCATCACCAACTTCAGAGAATGAAATCGACTCACCGAAAACCATTTTAGATGACATGGATAGTAGTACTGTTGAAAGAAGCACAAGTGATTCTTGTCGTATGGGGTTCGAGGAAGACCTCTTCACAAATTTTTGGGTTGAAGATATGGCAGAATCATCAAGAACATGTTTCTCATTTACTGAAGGAGAAGTAAGTAACGTAGACTTCTGTTTCAATATGGAACTCTGGAATCATCCAAAAGAAGAAGAGAAAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

251

Amino Acids

29.28

Weight (kDa)

8.81

Isoelectric Point (pI)

61.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 3.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 74 2.2e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 66 - 110 8.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 69 - 119 6.4e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 119
AccB1I GGYRCC 1 cut(s) 108
AccBSI CCGCTC 1 cut(s) 489
AccI GTMKAC 1 cut(s) 699
AccIII TCCGGA 1 cut(s) 287
AciI CCGC 1 cut(s) 487
AcoI YGGCCR 1 cut(s) 484
AcsI RAATTY 2 cut(s) 478, 625
AcuI CTGAAG 3 cut(s) 200, 495, 699
AfaI GTAC 1 cut(s) 565
AfiI CCNNNNNNNGG 1 cut(s) 333
AflIII ACRYGT 1 cut(s) 662
AgsI TTSAA 7 cut(s) 136, 436, 467, 473, 572, 638, 712
AjuI GAANNNNNNNTTGG 4 cut(s) 28, 60, 465, 497
AluBI AGCT 3 cut(s) 153, 247, 446
AluI AGCT 3 cut(s) 153, 247, 446
Aor13HI TCCGGA 1 cut(s) 287
AoxI GGCC 2 cut(s) 395, 484
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 2 cut(s) 478, 625
AseI ATTAAT 1 cut(s) 269
Asp700I GAANNNNTTC 1 cut(s) 283
AsuC2I CCSGG 1 cut(s) 113
AsuHPI GGTGA 2 cut(s) 495, 522
BanI GGYRCC 1 cut(s) 108
BbsI GAAGAC 3 cut(s) 92, 286, 618
BbvI GCAGC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 350
BciVI GTATCC 1 cut(s) 438
BcnI CCSGG 1 cut(s) 113
BfaI CTAG 2 cut(s) 51, 338
BfmI CTRYAG 1 cut(s) 154
BfuAI ACCTGC 1 cut(s) 119
BfuI GTATCC 1 cut(s) 438
BisI GCNGC 2 cut(s) 154, 487
BlsI GCNGC 2 cut(s) 155, 488
BmcAI AGTACT 1 cut(s) 565
Bme1390I CCNGG 1 cut(s) 113
BmiI GGNNCC 2 cut(s) 110, 117
BmrFI CCNGG 1 cut(s) 113
BmsI GCATC 2 cut(s) 131, 509
BpiI GAAGAC 3 cut(s) 92, 286, 618
BpmI CTGGAG 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 113
BsaWI WCCGGW 1 cut(s) 287
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 1 cut(s) 333
Bse1I ACTGG 2 cut(s) 301, 323
Bse3DI GCAATG 1 cut(s) 76
BseAI TCCGGA 1 cut(s) 287
BseGI GGATG 3 cut(s) 10, 220, 730
BseLI CCNNNNNNNGG 1 cut(s) 333
BseMI GCAATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 85
BseNI ACTGG 2 cut(s) 301, 323
BseXI GCAGC 1 cut(s) 140
BshFI GGCC 2 cut(s) 397, 486
BshNI GGYRCC 1 cut(s) 108
BsiSI CCGG 2 cut(s) 112, 288
BslI CCNNNNNNNGG 1 cut(s) 333
BsnI GGCC 2 cut(s) 397, 486
Bsp13I TCCGGA 1 cut(s) 287
Bsp143I GATC 2 cut(s) 64, 223
BspACI CCGC 1 cut(s) 487
BspANI GGCC 2 cut(s) 397, 486
BspCNI CTCAG 1 cut(s) 84
BspEI TCCGGA 1 cut(s) 287
BspLI GGNNCC 2 cut(s) 110, 117
BspMAI CTGCAG 1 cut(s) 158
BspMI ACCTGC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 489
BsrDI GCAATG 1 cut(s) 76
BsrI ACTGG 2 cut(s) 301, 323
BssMI GATC 2 cut(s) 64, 223
Bst4CI ACNGT 1 cut(s) 568
Bst6I CTCTTC 3 cut(s) 468, 623, 738
BstDEI CTNAG 2 cut(s) 71, 161
BstF5I GGATG 3 cut(s) 10, 220, 730
BstKTI GATC 2 cut(s) 67, 226
BstMBI GATC 2 cut(s) 64, 223
BstMWI GCNNNNNNNGC 2 cut(s) 150, 244
BstNSI RCATGY 1 cut(s) 666
BstSCI CCNGG 1 cut(s) 111
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 140
BstV2I GAAGAC 3 cut(s) 92, 286, 618
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 2 cut(s) 397, 486
BtsCI GGATG 3 cut(s) 10, 220, 730
BveI ACCTGC 1 cut(s) 119
Csp6I GTAC 1 cut(s) 564
CspCI CAANNNNNGTGG 2 cut(s) 181, 216
CviAII CATG 5 cut(s) 82, 92, 553, 663, 753
CviQI GTAC 1 cut(s) 564
DdeI CTNAG 2 cut(s) 71, 161
DpnI GATC 2 cut(s) 66, 225
DpnII GATC 2 cut(s) 64, 223
DraI TTTAAA 1 cut(s) 456
EaeI YGGCCR 1 cut(s) 484
Eam1104I CTCTTC 3 cut(s) 468, 623, 738
EarI CTCTTC 3 cut(s) 468, 623, 738
Eco147I AGGCCT 1 cut(s) 397
Eco57I CTGAAG 3 cut(s) 200, 495, 699
FaeI CATG 5 cut(s) 85, 95, 556, 666, 756
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 574, 606
FatI CATG 5 cut(s) 81, 91, 552, 662, 752
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 2 cut(s) 154, 487
FokI GGATG 3 cut(s) 17, 227, 717
Fsp4HI GCNGC 2 cut(s) 154, 487
FspBI CTAG 2 cut(s) 51, 338
GluI GCNGC 2 cut(s) 154, 487
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 2 cut(s) 397, 486
HapII CCGG 2 cut(s) 112, 288
Hin1II CATG 5 cut(s) 85, 95, 556, 666, 756
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 7 cut(s) 88, 341, 371, 527, 587, 650, 727
HpaII CCGG 2 cut(s) 112, 288
HphI GGTGA 2 cut(s) 495, 522
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 2 cut(s) 180, 514
Hpy188III TCNNGA 6 cut(s) 288, 327, 345, 368, 657, 724
Hpy8I GTNNAC 1 cut(s) 700
HpyAV CCTTC 3 cut(s) 129, 421, 674
HpyCH4III ACNGT 1 cut(s) 568
HpyCH4IV ACGT 1 cut(s) 696
HpyCH4V TGCA 3 cut(s) 81, 144, 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 244
HpyF3I CTNAG 2 cut(s) 71, 161
HpySE526I ACGT 1 cut(s) 696
Hsp92II CATG 5 cut(s) 85, 95, 556, 666, 756
Kpn2I TCCGGA 1 cut(s) 287
Kzo9I GATC 2 cut(s) 64, 223
Lsp1109I GCAGC 1 cut(s) 140
LweI GCATC 2 cut(s) 131, 509
MaeI CTAG 2 cut(s) 51, 338
MaeII ACGT 1 cut(s) 696
MaeIII GTNAC 2 cut(s) 14, 692
MalI GATC 2 cut(s) 66, 225
MbiI CCGCTC 1 cut(s) 489
MboI GATC 2 cut(s) 64, 223
MluCI AATT 7 cut(s) 270, 313, 348, 450, 467, 478, 625
MlyI GAGTC 2 cut(s) 82, 521
MnlI CCTC 6 cut(s) 49, 191, 205, 408, 601, 626
MroI TCCGGA 1 cut(s) 287
MroXI GAANNNNTTC 1 cut(s) 283
MseI TTAA 3 cut(s) 269, 351, 455
MspI CCGG 2 cut(s) 112, 288
MspR9I CCNGG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 150, 244
NciI CCSGG 1 cut(s) 113
NdeII GATC 2 cut(s) 64, 223
NlaIII CATG 5 cut(s) 85, 95, 556, 666, 756
NlaIV GGNNCC 2 cut(s) 110, 117
NspI RCATGY 1 cut(s) 666
PceI AGGCCT 1 cut(s) 397
PciI ACATGT 1 cut(s) 662
PdmI GAANNNNTTC 1 cut(s) 283
PfeI GAWTC 5 cut(s) 341, 371, 587, 650, 727
PkrI GCNGC 2 cut(s) 155, 488
PleI GAGTC 2 cut(s) 82, 521
PpsI GAGTC 2 cut(s) 82, 521
PscI ACATGT 1 cut(s) 662
PshBI ATTAAT 1 cut(s) 269
PspN4I GGNNCC 2 cut(s) 110, 117
PstI CTGCAG 1 cut(s) 158
RsaI GTAC 1 cut(s) 565
RsaNI GTAC 1 cut(s) 564
SaqAI TTAA 3 cut(s) 269, 351, 455
SatI GCNGC 2 cut(s) 154, 487
Sau3AI GATC 2 cut(s) 64, 223
ScaI AGTACT 1 cut(s) 565
SchI GAGTC 2 cut(s) 82, 521
ScrFI CCNGG 1 cut(s) 113
SfaNI GCATC 2 cut(s) 131, 509
SfcI CTRYAG 1 cut(s) 154
Sse9I AATT 7 cut(s) 270, 313, 348, 450, 467, 478, 625
SseBI AGGCCT 1 cut(s) 397
SsiI CCGC 1 cut(s) 487
SspI AATATT 1 cut(s) 231
SspMI CTAG 2 cut(s) 51, 338
StuI AGGCCT 1 cut(s) 397
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 568
TaiI ACGT 1 cut(s) 699
TaqI TCGA 4 cut(s) 346, 400, 525, 606
TasI AATT 7 cut(s) 270, 313, 348, 450, 467, 478, 625
TatI WGTACW 1 cut(s) 563
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 5 cut(s) 341, 371, 587, 650, 727
Tru1I TTAA 3 cut(s) 269, 351, 455
Tru9I TTAA 3 cut(s) 269, 351, 455
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 3 cut(s) 98, 231, 534
TspGWI ACGGA 1 cut(s) 224
VspI ATTAAT 1 cut(s) 269
XapI RAATTY 2 cut(s) 478, 625
XceI RCATGY 1 cut(s) 666
XmiI GTMKAC 1 cut(s) 699
XmnI GAANNNNTTC 1 cut(s) 283
XspI CTAG 2 cut(s) 51, 338
ZrmI AGTACT 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.