FvH4_1g22020
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000402
Physical Location & Seq
Reverse (-)
13950290 .. 13952507
2218 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g22020.t1

Sequence Viewer

Length: 807 bp
ATGGTCTTAGGATACGTACATGTTTTCGAAACCCTATATATTAATTTGCTTCGGTTCTTAGTCAGCAACTCAGCATACAGTGAAATCTGCTTAATTTTCATGGAGGGTTATTTCGGTGTGAGAAAAGGTGCATCGACTAAAGAGGAAGATGAACTTCTGAAACAGTTCATCGAAATTCATGGAGAAGGCAAATGGCATCATGTTCCTCTCAAATCAGGCTTAAACAGATGCAGGAAGAGCTGTAGACTGAGATGGCTGAATTATTTGAAGCCGAATATCAAGAGAGGAGAGTTTGCAGAGGATGAAGTTGATTTGATCATCAGGCTTCATAAGCTTCTAGGAAACAGGTGGTCTTTAATTGCCGGAAGATTGCCAGGAAGAACTGCCAATGATGTGAAGAACTATTGGAATACTTATCAAAGGAAAAAGGATCAAAAGACGGCTTCATACGCAAAGCAACTGAAAGTTAAATCTCAAGAAAATACAAAAGCCACCACAATTGTAAGACCTCGACCACGAACCTTCATCAAAAGGTTCAATTTTACGGAGAGATATGAAAATATAGAGCATAATCATTCAGAAATGAGTTATACCAGTTCTTTACCAACAGCACCACCACAGACTCTACAATTAGAAAATGTAACTGATTGGTGGAAAGATTTCGCAGAAGACAGTACAGAGAGCATTGATAGAACAATGTGTTCTGGTCTTATTGGTTTGGAGGATCATGACTTCTTCACAAACTTTTGGGTCGAAGATACGGTACAATCGGCAAGCAATGATCTAGTCAACATCTCCTACGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

269

Amino Acids

31.38

Weight (kDa)

8.54

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 46 - 89 3.1e-13 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 46 - 103 4.6e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 95 - 139 1.7e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 100 - 147 2e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 244
AclWI GGATC 2 cut(s) 438, 732
AcsI RAATTY 1 cut(s) 174
AfaI GTAC 3 cut(s) 18, 676, 765
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 2 cut(s) 268, 538
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 2 cut(s) 240, 334
AluI AGCT 2 cut(s) 240, 334
AlwI GGATC 2 cut(s) 438, 732
ApoI RAATTY 1 cut(s) 174
AseI ATTAAT 1 cut(s) 42
Asp700I GAANNNNTTC 2 cut(s) 164, 659
AsuII TTCGAA 1 cut(s) 27
BarI GAAGNNNNNNTAC 2 cut(s) 747, 779
BbsI GAAGAC 1 cut(s) 675
BccI CCATC 1 cut(s) 246
BceAI ACGGC 1 cut(s) 456
BciT130I CCWGG 1 cut(s) 375
BciVI GTATCC 1 cut(s) 5
BclI TGATCA 1 cut(s) 315
BfaI CTAG 2 cut(s) 338, 785
BfmI CTRYAG 1 cut(s) 241
BfuI GTATCC 1 cut(s) 5
Bme1390I CCNGG 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 3 cut(s) 140, 205, 218
BpiI GAAGAC 1 cut(s) 675
Bpu14I TTCGAA 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 459
BsaAI YACGTR 2 cut(s) 16, 802
Bse1I ACTGG 1 cut(s) 594
Bse3DI GCAATG 1 cut(s) 784
BseBI CCWGG 1 cut(s) 375
BseGI GGATG 1 cut(s) 307
BseMI GCAATG 1 cut(s) 784
BseMII CTCAG 2 cut(s) 84, 239
BseNI ACTGG 1 cut(s) 594
BseRI GAGGAG 1 cut(s) 300
BsiSI CCGG 1 cut(s) 363
Bsp119I TTCGAA 1 cut(s) 27
Bsp143I GATC 4 cut(s) 315, 430, 724, 781
BspCNI CTCAG 2 cut(s) 83, 240
BspHI TCATGA 1 cut(s) 727
BspPI GGATC 2 cut(s) 438, 732
BspQI GCTCTTC 1 cut(s) 230
BspT104I TTCGAA 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 784
BsrI ACTGG 1 cut(s) 594
BssMI GATC 4 cut(s) 315, 430, 724, 781
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 4 cut(s) 80, 165, 674, 763
Bst6I CTCTTC 1 cut(s) 230
BstBAI YACGTR 2 cut(s) 16, 802
BstBI TTCGAA 1 cut(s) 27
BstC8I GCNNGC 1 cut(s) 775
BstDEI CTNAG 4 cut(s) 7, 58, 70, 248
BstF5I GGATG 1 cut(s) 307
BstKTI GATC 4 cut(s) 318, 433, 727, 784
BstMBI GATC 4 cut(s) 315, 430, 724, 781
BstMWI GCNNNNNNNGC 3 cut(s) 237, 331, 449
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 1 cut(s) 373
BstSFI CTRYAG 1 cut(s) 241
BstSNI TACGTA 2 cut(s) 16, 802
BstV2I GAAGAC 1 cut(s) 675
BsuI GTATCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 307
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 775
CciI TCATGA 1 cut(s) 727
Csp6I GTAC 3 cut(s) 17, 675, 764
CspCI CAANNNNNGTGG 2 cut(s) 481, 516
CviAII CATG 5 cut(s) 20, 100, 179, 200, 728
CviJI RGCY 8 cut(s) 219, 240, 256, 271, 325, 334, 443, 491
CviKI_1 RGCY 8 cut(s) 219, 240, 256, 271, 325, 334, 443, 491
CviQI GTAC 3 cut(s) 17, 675, 764
DdeI CTNAG 4 cut(s) 7, 58, 70, 248
DpnI GATC 4 cut(s) 317, 432, 726, 783
DpnII GATC 4 cut(s) 315, 430, 724, 781
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco105I TACGTA 2 cut(s) 16, 802
EcoRII CCWGG 1 cut(s) 373
FaeI CATG 5 cut(s) 23, 103, 182, 203, 731
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 5 cut(s) 19, 99, 178, 199, 727
FbaI TGATCA 1 cut(s) 315
FblI GTMKAC 1 cut(s) 244
FokI GGATG 1 cut(s) 314
FspBI CTAG 2 cut(s) 338, 785
HapII CCGG 1 cut(s) 363
Hin1II CATG 5 cut(s) 23, 103, 182, 203, 731
HincII GTYRAC 1 cut(s) 790
HindII GTYRAC 1 cut(s) 790
HindIII AAGCTT 1 cut(s) 332
HinfI GANTC 1 cut(s) 622
HpaII CCGG 1 cut(s) 363
Hpy166II GTNNAC 2 cut(s) 245, 790
Hpy188I TCNGA 2 cut(s) 159, 580
Hpy188III TCNNGA 3 cut(s) 280, 476, 728
Hpy8I GTNNAC 2 cut(s) 245, 790
HpyAV CCTTC 2 cut(s) 179, 532
HpyCH4III ACNGT 4 cut(s) 80, 165, 674, 763
HpyCH4IV ACGT 2 cut(s) 15, 801
HpyCH4V TGCA 3 cut(s) 131, 231, 296
HpyF10VI GCNNNNNNNGC 3 cut(s) 237, 331, 449
HpyF3I CTNAG 4 cut(s) 7, 58, 70, 248
HpySE526I ACGT 2 cut(s) 15, 801
Hsp92II CATG 5 cut(s) 23, 103, 182, 203, 731
Ksp22I TGATCA 1 cut(s) 315
Kzo9I GATC 4 cut(s) 315, 430, 724, 781
LguI GCTCTTC 1 cut(s) 230
LpnPI CCDG 9 cut(s) 201, 217, 307, 331, 360, 376, 387, 607, 690
LweI GCATC 3 cut(s) 140, 205, 218
MaeI CTAG 2 cut(s) 338, 785
MaeII ACGT 2 cut(s) 15, 801
MaeIII GTNAC 1 cut(s) 640
MalI GATC 4 cut(s) 317, 432, 726, 783
MboI GATC 4 cut(s) 315, 430, 724, 781
MboII GAAGA 8 cut(s) 158, 247, 378, 390, 409, 680, 727, 767
MfeI CAATTG 1 cut(s) 498
MluCI AATT 8 cut(s) 43, 93, 174, 259, 357, 498, 538, 629
MlyI GAGTC 1 cut(s) 616
MnlI CCTC 7 cut(s) 97, 136, 216, 278, 292, 519, 715
MroXI GAANNNNTTC 2 cut(s) 164, 659
MseI TTAA 5 cut(s) 42, 92, 221, 356, 468
MspI CCGG 1 cut(s) 363
MspR9I CCNGG 1 cut(s) 375
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 3 cut(s) 237, 331, 449
NdeII GATC 4 cut(s) 315, 430, 724, 781
NlaIII CATG 5 cut(s) 23, 103, 182, 203, 731
NspI RCATGY 1 cut(s) 23
NspV TTCGAA 1 cut(s) 27
PagI TCATGA 1 cut(s) 727
PciI ACATGT 1 cut(s) 19
PciSI GCTCTTC 1 cut(s) 230
PdmI GAANNNNTTC 2 cut(s) 164, 659
PleI GAGTC 1 cut(s) 616
PpsI GAGTC 1 cut(s) 616
Ppu21I YACGTR 2 cut(s) 16, 802
PscI ACATGT 1 cut(s) 19
PshBI ATTAAT 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
RsaI GTAC 3 cut(s) 18, 676, 765
RsaNI GTAC 3 cut(s) 17, 675, 764
SapI GCTCTTC 1 cut(s) 230
SaqAI TTAA 5 cut(s) 42, 92, 221, 356, 468
Sau3AI GATC 4 cut(s) 315, 430, 724, 781
SchI GAGTC 1 cut(s) 616
ScrFI CCNGG 1 cut(s) 375
SetI ASST 9 cut(s) 18, 130, 242, 336, 350, 511, 524, 536, 804
SfaNI GCATC 3 cut(s) 140, 205, 218
SfcI CTRYAG 1 cut(s) 241
SfuI TTCGAA 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 474
SmoI CTYRAG 1 cut(s) 474
SnaBI TACGTA 2 cut(s) 16, 802
Sse9I AATT 8 cut(s) 43, 93, 174, 259, 357, 498, 538, 629
SspMI CTAG 2 cut(s) 338, 785
StyD4I CCNGG 1 cut(s) 373
TaaI ACNGT 4 cut(s) 80, 165, 674, 763
TaiI ACGT 2 cut(s) 18, 804
TaqI TCGA 5 cut(s) 27, 134, 171, 511, 753
TasI AATT 8 cut(s) 43, 93, 174, 259, 357, 498, 538, 629
TatI WGTACW 1 cut(s) 674
Tru1I TTAA 5 cut(s) 42, 92, 221, 356, 468
Tru9I TTAA 5 cut(s) 42, 92, 221, 356, 468
TscAI CASTG 1 cut(s) 85
TspDTI ATGAA 9 cut(s) 88, 157, 165, 167, 317, 318, 435, 514, 570
TspGWI ACGGA 1 cut(s) 560
TspRI CASTG 1 cut(s) 85
VspI ATTAAT 1 cut(s) 42
XapI RAATTY 1 cut(s) 174
XceI RCATGY 1 cut(s) 23
XmiI GTMKAC 1 cut(s) 244
XmnI GAANNNNTTC 2 cut(s) 164, 659
XspI CTAG 2 cut(s) 338, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.