MD09G1278600.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000402
Physical Location & Seq
Forward (+)
35542733 .. 35549175
6443 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1278600.v1.1.491

Sequence Viewer

Length: 732 bp
ATGGAGGGATATAACGAAAACCTGAGTGTGAGAAAAGGTGCCTGGACTCGAGAGGAAGACAATCTTCTCAGGCAGTGCGTTGAGATTCATGGAGAGGGAAAGTGGAACCAAGTTTCATACAAAGCAGGCTTAAACAGGTGCAGGAAGAGCTGCAGACAAAGATGGTTAAACTATCTGAAGCCAAATATCAAGAGAGGAGACTTTAAAGAGGATGAAGTAGATCTTATAATTAGACTTCACAGGCTTTTGGGAAACAGGTGGTCATTGATTGCTAGAAGACTTCCAGGAAGAACAGCAAATGCTGTGAAAAATTATTGGAACACTCGATTGCGGATCGATTCTCGCATGAAAACGGTGAAAAATAAATCTCAAGAAATGAGAAAGACCAATGTGATAAGACCTCAGCCCCAAAAATTCAACAGAAGTTCATATTACTTAAGCAGTAAAGAACCAATTCTAGACCATATTCAATCAGCAGAAGATTTAAGTACGCCACCACAAACGTCGTCGTCAACAAAGAATGGAAATGATTGGTGGGAGACCTTGTTAGAAGGCGAGGATACTTTTGAAAGAGCTGCATATCCCAGCATTGAGTTAGAGGAAGAACTCTTCACAAGTTTTTGGTTTGATGATCGACTGTCGCCAAGATCATGCGCCAATTTTCCTGAAGGACAAAGTAGAAGTGAATTCTCCTTTAGCACGGACCTTTGGAATCATTCAAAAGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

244

Amino Acids

28.73

Weight (kDa)

8.99

Isoelectric Point (pI)

61.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 12 - 59 7.5e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 15 - 73 1.9e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 65 - 109 2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 69 - 117 1.1e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 227
AccB1I GGYRCC 1 cut(s) 38
AciI CCGC 1 cut(s) 331
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 2 cut(s) 413, 686
AcuI CTGAAG 2 cut(s) 197, 687
AfaI GTAC 1 cut(s) 490
AflII CTTAAG 1 cut(s) 436
AgsI TTSAA 4 cut(s) 418, 470, 569, 720
AjnI CCWGG 2 cut(s) 41, 283
AluBI AGCT 2 cut(s) 150, 575
AluI AGCT 2 cut(s) 150, 575
Alw26I GTCTC 2 cut(s) 192, 533
AlwI GGATC 1 cut(s) 341
Ama87I CYCGRG 1 cut(s) 48
ApeKI GCWGC 2 cut(s) 150, 575
ApoI RAATTY 2 cut(s) 413, 686
Asp700I GAANNNNTTC 1 cut(s) 453
AspLEI GCGC 1 cut(s) 656
AspS9I GGNCC 1 cut(s) 703
AsuHPI GGTGA 1 cut(s) 367
AvaI CYCGRG 1 cut(s) 48
AvaII GGWCC 1 cut(s) 703
BanI GGYRCC 1 cut(s) 38
BbsI GAAGAC 2 cut(s) 63, 283
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 2 cut(s) 137, 562
BccI CCATC 1 cut(s) 156
BciT130I CCWGG 2 cut(s) 43, 285
BciVI GTATCC 1 cut(s) 553
BcoDI GTCTC 2 cut(s) 192, 533
BfaI CTAG 2 cut(s) 273, 458
BfmI CTRYAG 1 cut(s) 151
BfrI CTTAAG 1 cut(s) 436
BfuI GTATCC 1 cut(s) 553
BglII AGATCT 1 cut(s) 220
BisI GCNGC 2 cut(s) 151, 576
BlsI GCNGC 2 cut(s) 152, 577
Bme1390I CCNGG 2 cut(s) 43, 285
Bme18I GGWCC 1 cut(s) 703
BmeT110I CYCGRG 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 703
BmiI GGNNCC 2 cut(s) 40, 107
BmrFI CCNGG 2 cut(s) 43, 285
BpiI GAAGAC 2 cut(s) 63, 283
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 354
Bsa29I ATCGAT 1 cut(s) 336
BsaI GGTCTC 1 cut(s) 533
BsaXI ACNNNNNCTCC 2 cut(s) 530, 560
BseBI CCWGG 2 cut(s) 43, 285
BseCI ATCGAT 1 cut(s) 336
BseGI GGATG 1 cut(s) 217
BseMII CTCAG 3 cut(s) 14, 82, 416
BseRI GAGGAG 1 cut(s) 210
BseXI GCAGC 2 cut(s) 137, 562
BseYI CCCAGC 1 cut(s) 584
BsgI GTGCAG 1 cut(s) 160
BshNI GGYRCC 1 cut(s) 38
BshVI ATCGAT 1 cut(s) 336
BsiHKCI CYCGRG 1 cut(s) 48
BsmAI GTCTC 2 cut(s) 192, 533
Bso31I GGTCTC 1 cut(s) 533
BsoBI CYCGRG 1 cut(s) 48
Bsp143I GATC 4 cut(s) 220, 333, 631, 647
BspACI CCGC 1 cut(s) 331
BspCNI CTCAG 3 cut(s) 15, 81, 415
BspDI ATCGAT 1 cut(s) 336
BspLI GGNNCC 2 cut(s) 40, 107
BspMAI CTGCAG 1 cut(s) 155
BspPI GGATC 1 cut(s) 341
BspQI GCTCTTC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 38
BspTI CTTAAG 1 cut(s) 436
BspTNI GGTCTC 1 cut(s) 533
BssMI GATC 4 cut(s) 220, 333, 631, 647
Bst2UI CCWGG 2 cut(s) 43, 285
Bst4CI ACNGT 2 cut(s) 355, 639
Bst6I CTCTTC 2 cut(s) 140, 614
BstAFI CTTAAG 1 cut(s) 436
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 3 cut(s) 23, 68, 402
BstF5I GGATG 1 cut(s) 217
BstHHI GCGC 1 cut(s) 656
BstKTI GATC 4 cut(s) 223, 336, 634, 650
BstMAI GTCTC 2 cut(s) 192, 533
BstMBI GATC 4 cut(s) 220, 333, 631, 647
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 2 cut(s) 43, 285
BstSCI CCNGG 2 cut(s) 41, 283
BstSFI CTRYAG 1 cut(s) 151
BstV1I GCAGC 2 cut(s) 137, 562
BstV2I GAAGAC 2 cut(s) 63, 283
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
Bsu15I ATCGAT 1 cut(s) 336
BsuI GTATCC 1 cut(s) 553
BsuTUI ATCGAT 1 cut(s) 336
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 80
BtsIMutI CAGTG 1 cut(s) 80
Cac8I GCNNGC 1 cut(s) 127
CfoI GCGC 1 cut(s) 656
Cfr13I GGNCC 1 cut(s) 703
ClaI ATCGAT 1 cut(s) 336
Csp6I GTAC 1 cut(s) 489
CviAII CATG 3 cut(s) 89, 346, 651
CviJI RGCY 6 cut(s) 129, 150, 181, 244, 406, 575
CviKI_1 RGCY 6 cut(s) 129, 150, 181, 244, 406, 575
CviQI GTAC 1 cut(s) 489
DdeI CTNAG 3 cut(s) 23, 68, 402
DpnI GATC 4 cut(s) 222, 335, 633, 649
DpnII GATC 4 cut(s) 220, 333, 631, 647
DraI TTTAAA 1 cut(s) 205
Eam1104I CTCTTC 2 cut(s) 140, 614
EarI CTCTTC 2 cut(s) 140, 614
Eco31I GGTCTC 1 cut(s) 533
Eco47I GGWCC 1 cut(s) 703
Eco57I CTGAAG 2 cut(s) 197, 687
Eco88I CYCGRG 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 686
EcoRII CCWGG 2 cut(s) 41, 283
FaeI CATG 3 cut(s) 92, 349, 654
FaiI YATR 9 cut(s) 12, 90, 118, 227, 347, 430, 465, 580, 652
FalI AAGNNNNNCTT 4 cut(s) 48, 80, 207, 239
FatI CATG 3 cut(s) 88, 345, 650
Fnu4HI GCNGC 2 cut(s) 151, 576
FokI GGATG 1 cut(s) 224
Fsp4HI GCNGC 2 cut(s) 151, 576
FspBI CTAG 2 cut(s) 273, 458
GlaI GCGC 1 cut(s) 655
GluI GCNGC 2 cut(s) 151, 576
GsaI CCCAGC 1 cut(s) 588
HhaI GCGC 1 cut(s) 656
Hin1II CATG 3 cut(s) 92, 349, 654
Hin6I GCGC 1 cut(s) 654
HinP1I GCGC 1 cut(s) 654
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HinfI GANTC 4 cut(s) 46, 85, 338, 712
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 1 cut(s) 513
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 5 cut(s) 50, 190, 371, 458, 665
Hpy8I GTNNAC 1 cut(s) 513
Hpy99I CGWCG 2 cut(s) 508, 511
HpyAV CCTTC 2 cut(s) 545, 662
HpyCH4III ACNGT 2 cut(s) 355, 639
HpyCH4IV ACGT 1 cut(s) 503
HpyCH4V TGCA 3 cut(s) 141, 153, 578
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 3 cut(s) 23, 68, 402
HpySE526I ACGT 1 cut(s) 503
Hsp92II CATG 3 cut(s) 92, 349, 654
HspAI GCGC 1 cut(s) 654
Kzo9I GATC 4 cut(s) 220, 333, 631, 647
LguI GCTCTTC 1 cut(s) 140
Lsp1109I GCAGC 2 cut(s) 137, 562
MaeI CTAG 2 cut(s) 273, 458
MaeII ACGT 1 cut(s) 503
MalI GATC 4 cut(s) 222, 335, 633, 649
MboI GATC 4 cut(s) 220, 333, 631, 647
MboII GAAGA 8 cut(s) 56, 68, 157, 288, 300, 491, 601, 614
MflI RGATCY 1 cut(s) 220
MluCI AATT 6 cut(s) 228, 310, 413, 453, 658, 686
MlyI GAGTC 1 cut(s) 40
MnlI CCTC 7 cut(s) 46, 88, 188, 202, 411, 550, 592
MroXI GAANNNNTTC 1 cut(s) 453
MseI TTAA 5 cut(s) 131, 167, 204, 437, 485
MspCI CTTAAG 1 cut(s) 436
MspR9I CCNGG 2 cut(s) 43, 285
MvaI CCWGG 2 cut(s) 43, 285
MwoI GCNNNNNNNGC 1 cut(s) 147
NdeII GATC 4 cut(s) 220, 333, 631, 647
NlaIII CATG 3 cut(s) 92, 349, 654
NlaIV GGNNCC 2 cut(s) 40, 107
PaeR7I CTCGAG 1 cut(s) 48
PciSI GCTCTTC 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 453
PfeI GAWTC 3 cut(s) 85, 338, 712
PfoI TCCNGGA 1 cut(s) 283
PkrI GCNGC 2 cut(s) 152, 577
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PsiI TTATAA 1 cut(s) 227
Psp6I CCWGG 2 cut(s) 41, 283
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 2 cut(s) 41, 283
PspN4I GGNNCC 2 cut(s) 40, 107
PspPI GGNCC 1 cut(s) 703
PstI CTGCAG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 1 cut(s) 490
RsaNI GTAC 1 cut(s) 489
SapI GCTCTTC 1 cut(s) 140
SaqAI TTAA 5 cut(s) 131, 167, 204, 437, 485
SatI GCNGC 2 cut(s) 151, 576
Sau3AI GATC 4 cut(s) 220, 333, 631, 647
Sau96I GGNCC 1 cut(s) 703
SchI GAGTC 1 cut(s) 40
ScrFI CCNGG 2 cut(s) 43, 285
SfcI CTRYAG 1 cut(s) 151
Sfr274I CTCGAG 1 cut(s) 48
SinI GGWCC 1 cut(s) 703
SlaI CTCGAG 1 cut(s) 48
SmlI CTYRAG 3 cut(s) 48, 369, 436
SmoI CTYRAG 3 cut(s) 48, 369, 436
Sse9I AATT 6 cut(s) 228, 310, 413, 453, 658, 686
SsiI CCGC 1 cut(s) 331
SspMI CTAG 2 cut(s) 273, 458
StyD4I CCNGG 2 cut(s) 41, 283
TaaI ACNGT 2 cut(s) 355, 639
TaiI ACGT 1 cut(s) 506
TaqI TCGA 4 cut(s) 49, 325, 336, 634
TasI AATT 6 cut(s) 228, 310, 413, 453, 658, 686
TfiI GAWTC 3 cut(s) 85, 338, 712
Tru1I TTAA 5 cut(s) 131, 167, 204, 437, 485
Tru9I TTAA 5 cut(s) 131, 167, 204, 437, 485
TscAI CASTG 1 cut(s) 80
TseI GCWGC 2 cut(s) 150, 575
TspDTI ATGAA 5 cut(s) 77, 105, 228, 362, 417
TspGWI ACGGA 1 cut(s) 716
TspRI CASTG 1 cut(s) 80
Vha464I CTTAAG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 703
XapI RAATTY 2 cut(s) 413, 686
XbaI TCTAGA 1 cut(s) 457
XhoI CTCGAG 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 453
XspI CTAG 2 cut(s) 273, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.