Rh3BG342300
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000402
Physical Location & Seq
Forward (+)
36780273 .. 36781150
878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG342300.1

Sequence Viewer

Length: 579 bp
ATGAATTTTGATACCGTATATACCAGAGTCTCTAAGATGGTGCTTTTCTTGCGAAGCTTGATTGTCTGGAAAATGTGGTCATTAATTGCTGGAAGACTTCCCGGACGAACTGGAAACGATGTGAAAAATTACTGGAACTCCCGACTACGGCAAGATTCTCGAATTAAAAATCATAAATCTCCAAAATCTATAAAGACCACAATAATAAGGCCTCGACCACGAACCTTCTCCAAAAGTTTGTATCCTTTGAACAAGAGAGCTACAATTTTAAAACCTTTTCAATTTGAAGAGAATTTTGGCCGCTCAACACAAGCATCACCAACTTCAGAGAATGAAATTGACTCACCGAAAACCATTTTAGATGACATGGATGACATGGATAGTAGTACTGTTGAAAGAAGCACAAGTGATTCTTGTCATCTGGGGTTCGAGGAAGACCTCTTCACAAATTTTTGGGTTGAAGATATGGCAGAATCATCAAGAACATGTTTCTCATTTACTGAAGGAGAAGTAAGTAACGTAGACTTCTATTTCAATATGGAACTCTGGAATCATCGAAAAGAAGAAGAGAGAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

192

Amino Acids

22.59

Weight (kDa)

6.85

Isoelectric Point (pI)

61.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 26 - 48 1.9e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 303
AccI GTMKAC 1 cut(s) 522
AciI CCGC 1 cut(s) 301
AcoI YGGCCR 1 cut(s) 298
AcsI RAATTY 3 cut(s) 4, 292, 448
AcuI CTGAAG 2 cut(s) 309, 522
AfaI GTAC 1 cut(s) 388
AfiI CCNNNNNNNGG 1 cut(s) 147
AflIII ACRYGT 1 cut(s) 485
AgsI TTSAA 6 cut(s) 250, 281, 287, 395, 461, 535
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AluBI AGCT 2 cut(s) 57, 260
AluI AGCT 2 cut(s) 57, 260
Alw26I GTCTC 1 cut(s) 34
AoxI GGCC 2 cut(s) 209, 298
ApoI RAATTY 3 cut(s) 4, 292, 448
AseI ATTAAT 1 cut(s) 83
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 309, 336
BbsI GAAGAC 2 cut(s) 100, 441
BccI CCATC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 140, 174
BciVI GTATCC 1 cut(s) 252
BcnI CCSGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 34
BfuI GTATCC 1 cut(s) 252
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
BmcAI AGTACT 1 cut(s) 388
Bme1390I CCNGG 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 102
BmsI GCATC 1 cut(s) 323
BpiI GAAGAC 2 cut(s) 100, 441
BpuMI CCSGG 1 cut(s) 102
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 147
Bse1I ACTGG 2 cut(s) 115, 137
BseGI GGATG 1 cut(s) 376
BseLI CCNNNNNNNGG 1 cut(s) 147
BseNI ACTGG 2 cut(s) 115, 137
BshFI GGCC 2 cut(s) 211, 300
BsiSI CCGG 1 cut(s) 102
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 1 cut(s) 34
BsnI GGCC 2 cut(s) 211, 300
BspACI CCGC 1 cut(s) 301
BspANI GGCC 2 cut(s) 211, 300
BsrBI CCGCTC 1 cut(s) 303
BsrI ACTGG 2 cut(s) 115, 137
Bst4CI ACNGT 2 cut(s) 16, 391
Bst6I CTCTTC 3 cut(s) 282, 446, 561
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 1 cut(s) 376
BstMAI GTCTC 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 49
BstNSI RCATGY 1 cut(s) 489
BstSCI CCNGG 1 cut(s) 100
BstV2I GAAGAC 2 cut(s) 100, 441
BsuI GTATCC 1 cut(s) 252
BsuRI GGCC 2 cut(s) 211, 300
BtsCI GGATG 1 cut(s) 376
Csp6I GTAC 1 cut(s) 387
CviAII CATG 4 cut(s) 367, 376, 486, 576
CviJI RGCY 4 cut(s) 57, 211, 260, 300
CviKI_1 RGCY 4 cut(s) 57, 211, 260, 300
CviQI GTAC 1 cut(s) 387
DdeI CTNAG 1 cut(s) 33
DraI TTTAAA 1 cut(s) 270
EaeI YGGCCR 1 cut(s) 298
Eam1104I CTCTTC 3 cut(s) 282, 446, 561
EarI CTCTTC 3 cut(s) 282, 446, 561
Eco147I AGGCCT 1 cut(s) 211
Eco57I CTGAAG 2 cut(s) 309, 522
FaeI CATG 4 cut(s) 370, 379, 489, 579
FalI AAGNNNNNCTT 2 cut(s) 397, 429
FatI CATG 4 cut(s) 366, 375, 485, 575
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 301
GluI GCNGC 1 cut(s) 301
HaeIII GGCC 2 cut(s) 211, 300
HapII CCGG 1 cut(s) 102
Hin1II CATG 4 cut(s) 370, 379, 489, 579
HindIII AAGCTT 1 cut(s) 55
HinfI GANTC 6 cut(s) 27, 155, 341, 410, 473, 550
HpaII CCGG 1 cut(s) 102
HphI GGTGA 2 cut(s) 309, 336
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 5 cut(s) 67, 141, 159, 480, 547
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 2 cut(s) 235, 497
HpyCH4III ACNGT 2 cut(s) 16, 391
HpyCH4IV ACGT 1 cut(s) 519
HpyF10VI GCNNNNNNNGC 1 cut(s) 49
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 519
Hsp92II CATG 4 cut(s) 370, 379, 489, 579
LpnPI CCDG 8 cut(s) 37, 52, 75, 96, 115, 118, 407, 532
LweI GCATC 1 cut(s) 323
MaeII ACGT 1 cut(s) 519
MaeIII GTNAC 1 cut(s) 515
MbiI CCGCTC 1 cut(s) 303
MboII GAAGA 7 cut(s) 105, 299, 433, 446, 473, 575, 578
MluCI AATT 9 cut(s) 4, 84, 127, 162, 264, 281, 292, 336, 448
MlyI GAGTC 2 cut(s) 36, 335
MnlI CCTC 3 cut(s) 222, 424, 449
MseI TTAA 3 cut(s) 83, 165, 269
MspI CCGG 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 49
NciI CCSGG 1 cut(s) 102
NlaIII CATG 4 cut(s) 370, 379, 489, 579
NspI RCATGY 1 cut(s) 489
PceI AGGCCT 1 cut(s) 211
PciI ACATGT 1 cut(s) 485
PfeI GAWTC 4 cut(s) 155, 410, 473, 550
PfoI TCCNGGA 1 cut(s) 100
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 2 cut(s) 35, 335
PpsI GAGTC 2 cut(s) 35, 335
PscI ACATGT 1 cut(s) 485
PshBI ATTAAT 1 cut(s) 83
RsaI GTAC 1 cut(s) 388
RsaNI GTAC 1 cut(s) 387
SaqAI TTAA 3 cut(s) 83, 165, 269
SatI GCNGC 1 cut(s) 301
ScaI AGTACT 1 cut(s) 388
SchI GAGTC 2 cut(s) 36, 335
ScrFI CCNGG 1 cut(s) 102
SetI ASST 6 cut(s) 59, 227, 262, 277, 441, 522
SfaNI GCATC 1 cut(s) 323
Sse9I AATT 9 cut(s) 4, 84, 127, 162, 264, 281, 292, 336, 448
SseBI AGGCCT 1 cut(s) 211
SsiI CCGC 1 cut(s) 301
StuI AGGCCT 1 cut(s) 211
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 2 cut(s) 16, 391
TaiI ACGT 1 cut(s) 522
TaqI TCGA 4 cut(s) 160, 214, 429, 556
TasI AATT 9 cut(s) 4, 84, 127, 162, 264, 281, 292, 336, 448
TatI WGTACW 1 cut(s) 386
TauI GCSGC 1 cut(s) 303
TfiI GAWTC 4 cut(s) 155, 410, 473, 550
Tru1I TTAA 3 cut(s) 83, 165, 269
Tru9I TTAA 3 cut(s) 83, 165, 269
TspDTI ATGAA 2 cut(s) 17, 348
VspI ATTAAT 1 cut(s) 83
XapI RAATTY 3 cut(s) 4, 292, 448
XceI RCATGY 1 cut(s) 489
XmiI GTMKAC 1 cut(s) 522
ZrmI AGTACT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.