Rroxscaffold_5G00359700
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000402
Physical Location & Seq
Reverse (-)
39905313 .. 39907409
2097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359700.1

Sequence Viewer

Length: 672 bp
ATGGAGTTGAGAAAAGGTGCATGGACCATAGAGGAAGATCATCTTCTCAGGAAGTGCATTGAAAAACATGGAGAAGGAAGATGGCACAAGATTCCCCTCCAAGCAGGCTTAAAGAGATGCAGAAAGAGCTGCAGAATGAGGTGGTTGAACTACCTGAAGCCAACCATCAAGAGAGGAGAATTTGAAGATGATGAAGTAGATCTAATGGTTAGGCTTTATAAGCTTTTAGGAAACAGGTGGTCATTGATTGCTGGCCGACTTCCAGGAAGAACCTCAAATGATGTGAAAAACTATTGGAGTGCTCGGCGAAGGAGAAATATGAATTTGAACATCGCAAAAGATAAACCTCGAGAAATAACAAGGACCACTATAATAAGACCTCGGCCACGGACATTCACAAAACGTTTACATATTCCCAGTGACAAAGCAGCAACCTCAAAGAATAGTAATATAAACAGATCATTACCTCCGGTACATGGACTTGATGAGTGGAAAATTGTACCAGCGGAACATGTCTCTACAAACTTATGGGTTCAAGATATGGTCTCAATGACCAAAACATGTGTCAATGTTGTCGAACGAAGTTTCGAATCTGACCTTTGGCATTTTCTCCAAGAAGAGATGAGAGAACAAGATGCAGACGATCTAATAAGTCTCAAAATAAAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

223

Amino Acids

26.41

Weight (kDa)

9.94

Isoelectric Point (pI)

58.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 5 - 52 2.5e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 8 - 67 3e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 58 - 99 1.4e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
AciI CCGC 1 cut(s) 506
AclI AACGTT 1 cut(s) 403
AcoI YGGCCR 2 cut(s) 253, 383
AcsI RAATTY 2 cut(s) 179, 322
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 2 cut(s) 474, 501
AfiI CCNNNNNNNGG 1 cut(s) 476
AflIII ACRYGT 2 cut(s) 511, 560
AgsI TTSAA 5 cut(s) 62, 148, 185, 328, 536
AjnI CCWGG 1 cut(s) 262
AluBI AGCT 2 cut(s) 129, 223
AluI AGCT 2 cut(s) 129, 223
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 3 cut(s) 520, 550, 659
Ama87I CYCGRG 1 cut(s) 348
AoxI GGCC 2 cut(s) 253, 383
ApeKI GCWGC 2 cut(s) 129, 428
ApoI RAATTY 2 cut(s) 179, 322
ArsI GACNNNNNNTTYG 2 cut(s) 549, 581
AspS9I GGNCC 2 cut(s) 24, 363
AsuII TTCGAA 1 cut(s) 588
AvaI CYCGRG 1 cut(s) 348
AvaII GGWCC 2 cut(s) 24, 363
Bbv12I GWGCWC 1 cut(s) 304
BbvI GCAGC 2 cut(s) 116, 440
BccI CCATC 2 cut(s) 75, 173
BciT130I CCWGG 1 cut(s) 264
BcoDI GTCTC 3 cut(s) 520, 550, 659
BfmI CTRYAG 1 cut(s) 130
BglII AGATCT 1 cut(s) 199
BisI GCNGC 2 cut(s) 130, 429
BlsI GCNGC 2 cut(s) 131, 430
Bme1390I CCNGG 1 cut(s) 264
Bme18I GGWCC 2 cut(s) 24, 363
BmeT110I CYCGRG 1 cut(s) 348
BmgT120I GGNCC 2 cut(s) 24, 363
BmrFI CCNGG 1 cut(s) 264
BmrI ACTGGG 1 cut(s) 411
BmsI GCATC 2 cut(s) 107, 625
BmuI ACTGGG 1 cut(s) 411
Bpu14I TTCGAA 1 cut(s) 588
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 2 cut(s) 380, 386
BsaWI WCCGGW 1 cut(s) 469
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 1 cut(s) 417
BseBI CCWGG 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 380, 386
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMII CTCAG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 417
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 116, 440
BshFI GGCC 2 cut(s) 255, 385
BsiHKAI GWGCWC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 348
BsiSI CCGG 1 cut(s) 470
BslI CCNNNNNNNGG 1 cut(s) 476
BsmAI GTCTC 3 cut(s) 520, 550, 659
BsnI GGCC 2 cut(s) 255, 385
Bso31I GGTCTC 1 cut(s) 550
BsoBI CYCGRG 1 cut(s) 348
Bsp119I TTCGAA 1 cut(s) 588
Bsp1286I GDGCHC 1 cut(s) 304
Bsp143I GATC 4 cut(s) 37, 199, 458, 643
BspACI CCGC 1 cut(s) 506
BspANI GGCC 2 cut(s) 255, 385
BspCNI CTCAG 1 cut(s) 60
BspMAI CTGCAG 1 cut(s) 134
BspT104I TTCGAA 1 cut(s) 588
BspTNI GGTCTC 1 cut(s) 550
BsrI ACTGG 1 cut(s) 417
BssECI CCNNGG 2 cut(s) 380, 386
BssMI GATC 4 cut(s) 37, 199, 458, 643
Bst2UI CCWGG 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 612
BstBI TTCGAA 1 cut(s) 588
BstC8I GCNNGC 2 cut(s) 106, 253
BstDEI CTNAG 1 cut(s) 47
BstDSI CCRYGG 1 cut(s) 386
BstKTI GATC 4 cut(s) 40, 202, 461, 646
BstMAI GTCTC 3 cut(s) 520, 550, 659
BstMBI GATC 4 cut(s) 37, 199, 458, 643
BstMWI GCNNNNNNNGC 2 cut(s) 126, 220
BstNI CCWGG 1 cut(s) 264
BstNSI RCATGY 2 cut(s) 515, 564
BstSCI CCNGG 1 cut(s) 262
BstSFI CTRYAG 1 cut(s) 130
BstV1I GCAGC 2 cut(s) 116, 440
BstX2I RGATCY 1 cut(s) 199
BstYI RGATCY 1 cut(s) 199
BsuRI GGCC 2 cut(s) 255, 385
BtgI CCRYGG 1 cut(s) 386
BtgZI GCGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 424
Cac8I GCNNGC 2 cut(s) 106, 253
Cfr13I GGNCC 2 cut(s) 24, 363
Csp6I GTAC 2 cut(s) 473, 500
CviAII CATG 5 cut(s) 21, 68, 476, 512, 561
CviJI RGCY 7 cut(s) 108, 129, 160, 214, 223, 255, 385
CviKI_1 RGCY 7 cut(s) 108, 129, 160, 214, 223, 255, 385
CviQI GTAC 2 cut(s) 473, 500
DdeI CTNAG 1 cut(s) 47
DpnI GATC 4 cut(s) 39, 201, 460, 645
DpnII GATC 4 cut(s) 37, 199, 458, 643
EaeI YGGCCR 2 cut(s) 253, 383
Eam1104I CTCTTC 1 cut(s) 612
EarI CTCTTC 1 cut(s) 612
Eco31I GGTCTC 1 cut(s) 550
Eco47I GGWCC 2 cut(s) 24, 363
Eco57I CTGAAG 1 cut(s) 176
Eco88I CYCGRG 1 cut(s) 348
EcoRII CCWGG 1 cut(s) 262
FaeI CATG 5 cut(s) 24, 71, 479, 515, 564
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FatI CATG 5 cut(s) 20, 67, 475, 511, 560
Fnu4HI GCNGC 2 cut(s) 130, 429
Fsp4HI GCNGC 2 cut(s) 130, 429
GluI GCNGC 2 cut(s) 130, 429
HaeIII GGCC 2 cut(s) 255, 385
HapII CCGG 1 cut(s) 470
Hin1II CATG 5 cut(s) 24, 71, 479, 515, 564
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 2 cut(s) 91, 590
HpaII CCGG 1 cut(s) 470
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 1 cut(s) 595
Hpy188III TCNNGA 4 cut(s) 49, 169, 350, 536
Hpy8I GTNNAC 1 cut(s) 407
HpyAV CCTTC 2 cut(s) 68, 303
HpyCH4IV ACGT 1 cut(s) 403
HpyCH4V TGCA 5 cut(s) 20, 57, 120, 132, 638
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 220
HpyF3I CTNAG 1 cut(s) 47
HpySE526I ACGT 1 cut(s) 403
Hsp92II CATG 5 cut(s) 24, 71, 479, 515, 564
Kzo9I GATC 4 cut(s) 37, 199, 458, 643
Lsp1109I GCAGC 2 cut(s) 116, 440
LweI GCATC 2 cut(s) 107, 625
MaeII ACGT 1 cut(s) 403
MaeIII GTNAC 1 cut(s) 419
MalI GATC 4 cut(s) 39, 201, 460, 645
MboI GATC 4 cut(s) 37, 199, 458, 643
MboII GAAGA 6 cut(s) 35, 47, 90, 197, 279, 629
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 1 cut(s) 304
MluCI AATT 4 cut(s) 179, 322, 495, 667
MnlI CCTC 9 cut(s) 25, 107, 132, 167, 283, 357, 390, 445, 477
MseI TTAA 1 cut(s) 110
MspA1I CMGCKG 1 cut(s) 506
MspI CCGG 1 cut(s) 470
MspR9I CCNGG 1 cut(s) 264
MvaI CCWGG 1 cut(s) 264
MwoI GCNNNNNNNGC 2 cut(s) 126, 220
NdeII GATC 4 cut(s) 37, 199, 458, 643
NlaIII CATG 5 cut(s) 24, 71, 479, 515, 564
NmeAIII GCCGAG 2 cut(s) 283, 361
NmuCI GTSAC 1 cut(s) 419
NspI RCATGY 2 cut(s) 515, 564
NspV TTCGAA 1 cut(s) 588
PaeR7I CTCGAG 1 cut(s) 348
PciI ACATGT 2 cut(s) 511, 560
PfeI GAWTC 2 cut(s) 91, 590
PfoI TCCNGGA 1 cut(s) 262
PkrI GCNGC 2 cut(s) 131, 430
PscI ACATGT 2 cut(s) 511, 560
PsiI TTATAA 1 cut(s) 219
Psp1406I AACGTT 1 cut(s) 403
Psp6I CCWGG 1 cut(s) 262
PspGI CCWGG 1 cut(s) 262
PspPI GGNCC 2 cut(s) 24, 363
PstI CTGCAG 1 cut(s) 134
PsuI RGATCY 1 cut(s) 199
RsaI GTAC 2 cut(s) 474, 501
RsaNI GTAC 2 cut(s) 473, 500
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 2 cut(s) 130, 429
Sau3AI GATC 4 cut(s) 37, 199, 458, 643
Sau96I GGNCC 2 cut(s) 24, 363
ScrFI CCNGG 1 cut(s) 264
SduI GDGCHC 1 cut(s) 304
SfaNI GCATC 2 cut(s) 107, 625
SfcI CTRYAG 1 cut(s) 130
Sfr274I CTCGAG 1 cut(s) 348
SfuI TTCGAA 1 cut(s) 588
SinI GGWCC 2 cut(s) 24, 363
SlaI CTCGAG 1 cut(s) 348
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
Sse9I AATT 4 cut(s) 179, 322, 495, 667
SsiI CCGC 1 cut(s) 506
StyD4I CCNGG 1 cut(s) 262
TaiI ACGT 1 cut(s) 406
TaqI TCGA 3 cut(s) 349, 576, 588
TasI AATT 4 cut(s) 179, 322, 495, 667
TfiI GAWTC 2 cut(s) 91, 590
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 2 cut(s) 129, 428
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 2 cut(s) 207, 335
TspGWI ACGGA 1 cut(s) 403
TspRI CASTG 1 cut(s) 424
VpaK11BI GGWCC 2 cut(s) 24, 363
XapI RAATTY 2 cut(s) 179, 322
XceI RCATGY 2 cut(s) 515, 564
XhoI CTCGAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.