Rh4DG197000
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000402
Physical Location & Seq
Forward (+)
38421341 .. 38425660
4320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG197000.1

Sequence Viewer

Length: 435 bp
ATGGCACAAGATTCCTCTCCAAGCAGGTGGTCATTGATTGCTGGCCGACTTCCAGGAAGAACCTCAAATGATGTGAAAAACTATTGGAATGCTCGGCGAAGGAGAAATGAATTGAACATCGAAAAAGATAAATCTCGACAAATGACAAAGACCCCTATAATAAAGCCTCGACCACGGACCTTCACAAAAAGTTTACATATTTCGGGTGACAGAGCAGCAACCTCAAAGAATAGTAATATAAACATATCATTACCTCCAGTAAATGGACTTGATGAGTGGAAAATTGTACCAGTGGAACATGTCTCTACAAACTTATGGGTTCAAGATATGGCCTCAGTGACCGAAAAATGTGTCAATGTTGCCGAGCGAAGTTTCGAATCTGACCTTTGGCATTTTCTCCAAGAAGAGATGAGAGAACAAGATTTAGACATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

144

Amino Acids

16.66

Weight (kDa)

9.2

Isoelectric Point (pI)

75.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 8 - 30 1.8e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 15
AccB7I CCANNNNNTGG 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 43
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 263
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 2 cut(s) 115, 323
AjnI CCWGG 1 cut(s) 52
Alw26I GTCTC 1 cut(s) 307
AoxI GGCC 2 cut(s) 43, 330
ApeKI GCWGC 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 336, 368
AspS9I GGNCC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 218
AsuII TTCGAA 1 cut(s) 375
AvaII GGWCC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 227
BciT130I CCWGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 307
BfuAI ACCTGC 1 cut(s) 15
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 54
Bme18I GGWCC 1 cut(s) 177
BmgT120I GGNCC 1 cut(s) 177
BmrFI CCNGG 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 240
Bpu14I TTCGAA 1 cut(s) 375
BsaJI CCNNGG 1 cut(s) 173
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 2 cut(s) 257, 290
BseBI CCWGG 1 cut(s) 54
BseDI CCNNGG 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMII CTCAG 1 cut(s) 348
BseNI ACTGG 2 cut(s) 257, 290
BseXI GCAGC 1 cut(s) 227
BshFI GGCC 2 cut(s) 45, 332
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 307
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 2 cut(s) 45, 332
Bsp119I TTCGAA 1 cut(s) 375
BspANI GGCC 2 cut(s) 45, 332
BspCNI CTCAG 1 cut(s) 347
BspMI ACCTGC 1 cut(s) 15
BspT104I TTCGAA 1 cut(s) 375
BsrI ACTGG 2 cut(s) 257, 290
BssECI CCNNGG 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 54
Bst6I CTCTTC 1 cut(s) 399
BstBI TTCGAA 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 43
BstDEI CTNAG 1 cut(s) 334
BstDSI CCRYGG 1 cut(s) 173
BstMAI GTCTC 1 cut(s) 307
BstNI CCWGG 1 cut(s) 54
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 52
BstV1I GCAGC 1 cut(s) 227
BstXI CCANNNNNNTGG 1 cut(s) 27
BsuRI GGCC 2 cut(s) 45, 332
BtgI CCRYGG 1 cut(s) 173
BtsIMutI CAGTG 2 cut(s) 297, 342
BveI ACCTGC 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 43
Cfr13I GGNCC 1 cut(s) 177
Csp6I GTAC 1 cut(s) 287
CviAII CATG 1 cut(s) 299
CviJI RGCY 3 cut(s) 45, 166, 332
CviKI_1 RGCY 3 cut(s) 45, 166, 332
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 1 cut(s) 334
EaeI YGGCCR 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 52
FaeI CATG 1 cut(s) 302
FaiI YATR 7 cut(s) 158, 198, 239, 245, 300, 316, 329
FatI CATG 1 cut(s) 298
Fnu4HI GCNGC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 216
GluI GCNGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 2 cut(s) 45, 332
Hin1II CATG 1 cut(s) 302
HinfI GANTC 2 cut(s) 11, 377
HphI GGTGA 1 cut(s) 218
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 2 cut(s) 382, 434
Hpy188III TCNNGA 2 cut(s) 135, 323
Hpy8I GTNNAC 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 93, 190
HpyF3I CTNAG 1 cut(s) 334
Hsp92II CATG 1 cut(s) 302
LpnPI CCDG 6 cut(s) 10, 27, 39, 66, 270, 303
Lsp1109I GCAGC 1 cut(s) 227
MaeIII GTNAC 2 cut(s) 206, 337
MboII GAAGA 2 cut(s) 69, 416
MluCI AATT 2 cut(s) 110, 282
MnlI CCTC 6 cut(s) 25, 73, 177, 232, 264, 343
MspR9I CCNGG 1 cut(s) 54
Mva1269I GAATGC 1 cut(s) 94
MvaI CCWGG 1 cut(s) 54
NlaIII CATG 1 cut(s) 302
NmeAIII GCCGAG 2 cut(s) 73, 388
NmuCI GTSAC 2 cut(s) 206, 337
NspI RCATGY 1 cut(s) 302
NspV TTCGAA 1 cut(s) 375
PaqCI CACCTGC 1 cut(s) 15
PciI ACATGT 1 cut(s) 298
PctI GAATGC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 11, 377
PflMI CCANNNNNTGG 1 cut(s) 263
PfoI TCCNGGA 1 cut(s) 52
PkrI GCNGC 1 cut(s) 217
PscI ACATGT 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 52
PspGI CCWGG 1 cut(s) 52
PspPI GGNCC 1 cut(s) 177
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
SatI GCNGC 1 cut(s) 216
Sau96I GGNCC 1 cut(s) 177
ScrFI CCNGG 1 cut(s) 54
SetI ASST 6 cut(s) 29, 65, 182, 224, 256, 387
SfuI TTCGAA 1 cut(s) 375
SinI GGWCC 1 cut(s) 177
Sse9I AATT 2 cut(s) 110, 282
StyD4I CCNGG 1 cut(s) 52
TaqI TCGA 4 cut(s) 120, 136, 169, 375
TaqII GACCGA 1 cut(s) 356
TasI AATT 2 cut(s) 110, 282
TfiI GAWTC 2 cut(s) 11, 377
TscAI CASTG 2 cut(s) 297, 342
TseFI GTSAC 2 cut(s) 206, 337
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 2 cut(s) 206, 337
TspDTI ATGAA 1 cut(s) 123
TspGWI ACGGA 1 cut(s) 190
TspRI CASTG 2 cut(s) 297, 342
Van91I CCANNNNNTGG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 177
XceI RCATGY 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.