Prupe.6G176300_v2.0.a1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000402
Physical Location & Seq
Forward (+)
18075101 .. 18077102
2002 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G176300.1

Sequence Viewer

Length: 732 bp
ATGGAGGGTAATAATTTATTGAGAGTGAGAAAAGGTGCATGGACTAGAGAGGAAGATGAACTTCTCAGGCAATACATTCAACAGCACGGTGAAGGCAAATGGCAACAGGTTTCTCTCAAAGCAGGCTTGAACAGATGCAGGAAAAGCTGTAGACTGAGGTGGTTGAACTACTTGAGACCAAATATCAAAACAGGAGACTTTGCAGAAGATGAAGTGGATCTCATGGTTAGGCTTCGAAAGCTTTTAGGGAACAGGTGGTCGCTGATTGCTGGAAGACTTCCTGGAAGAACATCAAACCATGTGAAAAACTGCTGGAGTACCCGACTAAGGAAAAATATGTCTTCTGGGGCCGAAAAAGATAAAACCCTAGAAACAACAAAGACAATAATATTAAGGCCTCAACCACGAACCTTCTCCAAAAAGCCAAATTGTTTGAGCAGCCCAGCTCCAACTTTACAGCATATTCAATTACAAGAGAATTTTAACTGGCCATTGCCATCATCACCGCCTATAGAAAATGGAATTGATGAGTGGAAAAGCCAGTTAGCTGATACGAACAGTGTTGAAAGAGCAGTGTGTTCTGGTTTTCAGTTGGAGGAAGATTTCTTCACAAACTTTTGGGTTGAAAATATAGCCCAAAACAAAGGAACTGGTGTAAATTCTGCTGACGAAGGCCTGCTGAGTAACAGTGACTTCTCTTTTCATCTTTGGAATTTTTCAAAAGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

244

Amino Acids

28.05

Weight (kDa)

9.35

Isoelectric Point (pI)

46.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 151
AciI CCGC 1 cut(s) 506
AclWI GGATC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 488
AcsI RAATTY 3 cut(s) 478, 658, 712
AfaI GTAC 1 cut(s) 319
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 7 cut(s) 80, 130, 166, 467, 566, 626, 720
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 4 cut(s) 147, 241, 446, 548
AluI AGCT 4 cut(s) 147, 241, 446, 548
Alw26I GTCTC 2 cut(s) 169, 189
AlwI GGATC 1 cut(s) 225
AoxI GGCC 4 cut(s) 348, 395, 488, 673
ApeKI GCWGC 1 cut(s) 438
ApoI RAATTY 3 cut(s) 478, 658, 712
AspS9I GGNCC 1 cut(s) 348
AsuHPI GGTGA 2 cut(s) 101, 495
AsuII TTCGAA 1 cut(s) 235
BalI TGGCCA 1 cut(s) 490
BbsI GAAGAC 2 cut(s) 280, 333
BbvI GCAGC 1 cut(s) 450
BccI CCATC 1 cut(s) 505
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 169, 189
BfaI CTAG 2 cut(s) 45, 368
BfmI CTRYAG 2 cut(s) 148, 510
BisI GCNGC 1 cut(s) 439
BlsI GCNGC 1 cut(s) 440
Bme1390I CCNGG 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 348
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 1 cut(s) 125
BpiI GAAGAC 2 cut(s) 280, 333
BpmI CTGGAG 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 193
BsaI GGTCTC 1 cut(s) 169
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 3 cut(s) 491, 541, 655
Bse3DI GCAATG 1 cut(s) 491
BseBI CCWGG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMI GCAATG 1 cut(s) 491
BseMII CTCAG 3 cut(s) 79, 146, 671
BseNI ACTGG 3 cut(s) 491, 541, 655
BseXI GCAGC 1 cut(s) 450
BseYI CCCAGC 1 cut(s) 442
BshFI GGCC 4 cut(s) 350, 397, 490, 675
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 2 cut(s) 169, 189
BsnI GGCC 4 cut(s) 350, 397, 490, 675
Bso31I GGTCTC 1 cut(s) 169
Bsp119I TTCGAA 1 cut(s) 235
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 1 cut(s) 506
BspANI GGCC 4 cut(s) 350, 397, 490, 675
BspCNI CTCAG 3 cut(s) 78, 147, 672
BspLI GGNNCC 1 cut(s) 349
BspPI GGATC 1 cut(s) 225
BspT104I TTCGAA 1 cut(s) 235
BspTNI GGTCTC 1 cut(s) 169
BsrDI GCAATG 1 cut(s) 491
BsrI ACTGG 3 cut(s) 491, 541, 655
BssMI GATC 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 3 cut(s) 89, 560, 689
BstBI TTCGAA 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 124, 677
BstDEI CTNAG 4 cut(s) 65, 155, 326, 680
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 2 cut(s) 169, 189
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 144, 238
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 2 cut(s) 148, 510
BstV1I GCAGC 1 cut(s) 450
BstV2I GAAGAC 2 cut(s) 280, 333
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 4 cut(s) 350, 397, 490, 675
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 3 cut(s) 565, 579, 694
Cac8I GCNNGC 2 cut(s) 124, 677
Cfr13I GGNCC 1 cut(s) 348
Csp6I GTAC 1 cut(s) 318
CviAII CATG 3 cut(s) 39, 223, 299
CviQI GTAC 1 cut(s) 318
DdeI CTNAG 4 cut(s) 65, 155, 326, 680
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 488
Eco147I AGGCCT 2 cut(s) 397, 675
Eco31I GGTCTC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 280
FaeI CATG 3 cut(s) 42, 226, 302
FaiI YATR 7 cut(s) 40, 224, 300, 338, 462, 512, 632
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FatI CATG 3 cut(s) 38, 222, 298
FblI GTMKAC 1 cut(s) 151
Fnu4HI GCNGC 1 cut(s) 439
Fsp4HI GCNGC 1 cut(s) 439
FspBI CTAG 2 cut(s) 45, 368
GluI GCNGC 1 cut(s) 439
GsaI CCCAGC 1 cut(s) 446
GsuI CTGGAG 1 cut(s) 334
HaeIII GGCC 4 cut(s) 350, 397, 490, 675
Hin1II CATG 3 cut(s) 42, 226, 302
HindIII AAGCTT 1 cut(s) 239
HphI GGTGA 2 cut(s) 101, 495
Hpy166II GTNNAC 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 152
HpyAV CCTTC 3 cut(s) 86, 421, 665
HpyCH4III ACNGT 3 cut(s) 89, 560, 689
HpyCH4V TGCA 3 cut(s) 38, 138, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 238
HpyF3I CTNAG 4 cut(s) 65, 155, 326, 680
Hsp92II CATG 3 cut(s) 42, 226, 302
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 1 cut(s) 451
Lsp1109I GCAGC 1 cut(s) 450
LweI GCATC 1 cut(s) 125
MaeI CTAG 2 cut(s) 45, 368
MaeIII GTNAC 2 cut(s) 683, 689
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 7 cut(s) 65, 218, 285, 297, 333, 598, 611
MflI RGATCY 1 cut(s) 217
MlsI TGGCCA 1 cut(s) 490
MluCI AATT 7 cut(s) 13, 427, 467, 478, 522, 658, 712
MluNI TGGCCA 1 cut(s) 490
MmeI TCCRAC 2 cut(s) 473, 573
MnlI CCTC 4 cut(s) 43, 150, 408, 589
Mox20I TGGCCA 1 cut(s) 490
MscI TGGCCA 1 cut(s) 490
MseI TTAA 2 cut(s) 392, 483
Msp20I TGGCCA 1 cut(s) 490
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 144, 238
NdeII GATC 1 cut(s) 217
NlaIII CATG 3 cut(s) 42, 226, 302
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 689
NspV TTCGAA 1 cut(s) 235
PceI AGGCCT 2 cut(s) 397, 675
PfoI TCCNGGA 1 cut(s) 280
PkrI GCNGC 1 cut(s) 440
Psp6I CCWGG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 442
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 348
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SaqAI TTAA 2 cut(s) 392, 483
SatI GCNGC 1 cut(s) 439
Sau3AI GATC 1 cut(s) 217
Sau96I GGNCC 1 cut(s) 348
ScrFI CCNGG 1 cut(s) 282
SetI ASST 9 cut(s) 37, 111, 149, 161, 243, 257, 413, 448, 550
SfaNI GCATC 1 cut(s) 125
SfcI CTRYAG 2 cut(s) 148, 510
SfuI TTCGAA 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 7 cut(s) 13, 427, 467, 478, 522, 658, 712
SseBI AGGCCT 2 cut(s) 397, 675
SsiI CCGC 1 cut(s) 506
SspI AATATT 1 cut(s) 390
SspMI CTAG 2 cut(s) 45, 368
StuI AGGCCT 2 cut(s) 397, 675
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 3 cut(s) 89, 560, 689
TaqI TCGA 1 cut(s) 235
TasI AATT 7 cut(s) 13, 427, 467, 478, 522, 658, 712
Tru1I TTAA 2 cut(s) 392, 483
Tru9I TTAA 2 cut(s) 392, 483
TscAI CASTG 3 cut(s) 565, 579, 694
TseFI GTSAC 1 cut(s) 689
TseI GCWGC 1 cut(s) 438
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 3 cut(s) 72, 225, 692
TspRI CASTG 3 cut(s) 565, 579, 694
XapI RAATTY 3 cut(s) 478, 658, 712
XmiI GTMKAC 1 cut(s) 151
XspI CTAG 2 cut(s) 45, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.