Rh4DG196500
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000402
Physical Location & Seq
Reverse (-)
38360227 .. 38360769
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG196500.1

Sequence Viewer

Length: 294 bp
ATGACAAAGACCCCTATAATAAAGCCTCGACCACGGACCTTCACAAAAAGTTTACATATTCCGGGTGACAGAGCAGCAACCTCAAAGAATAGTAATATAAACATATCATTACCTCCAGTAAATGGACTTGATGAGTGGAAAATTGTTCCAGGGGAACATGTCCCTACAAACTTATGGGTTCAAGATATGGCCTCAGTGACCGAAACATGTGTCAATGATGCCAAACGAAGTTTCGAATCTGACCTTTGGCATTTTCTCCAAGAAGAGATGAGAGAACAAGATTCAGACATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

97

Amino Acids

11.06

Weight (kDa)

5.51

Isoelectric Point (pI)

56.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 122
AfiI CCNNNNNNNGG 1 cut(s) 122
AflIII ACRYGT 2 cut(s) 157, 206
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 148
AjuI GAANNNNNNNTTGG 2 cut(s) 215, 247
AoxI GGCC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 74
ArsI GACNNNNNNTTYG 2 cut(s) 195, 227
AspS9I GGNCC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 63
AsuHPI GGTGA 1 cut(s) 77
AsuII TTCGAA 1 cut(s) 234
AvaII GGWCC 1 cut(s) 36
BbvI GCAGC 1 cut(s) 86
BciT130I CCWGG 1 cut(s) 150
BcnI CCSGG 1 cut(s) 63
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 63, 150
Bme18I GGWCC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 63, 150
BmsI GCATC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 32, 149
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 116
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 2 cut(s) 32, 149
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 116
BseXI GCAGC 1 cut(s) 86
BshFI GGCC 1 cut(s) 191
BsiSI CCGG 1 cut(s) 62
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 1 cut(s) 191
Bsp119I TTCGAA 1 cut(s) 234
BspANI GGCC 1 cut(s) 191
BspCNI CTCAG 1 cut(s) 206
BspT104I TTCGAA 1 cut(s) 234
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 2 cut(s) 32, 149
Bst2UI CCWGG 1 cut(s) 150
Bst6I CTCTTC 1 cut(s) 258
BstBI TTCGAA 1 cut(s) 234
BstDEI CTNAG 1 cut(s) 193
BstDSI CCRYGG 1 cut(s) 32
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 2 cut(s) 161, 210
BstSCI CCNGG 2 cut(s) 61, 148
BstV1I GCAGC 1 cut(s) 86
BsuRI GGCC 1 cut(s) 191
BtgI CCRYGG 1 cut(s) 32
BtsIMutI CAGTG 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 36
CviAII CATG 2 cut(s) 158, 207
CviJI RGCY 2 cut(s) 25, 191
CviKI_1 RGCY 2 cut(s) 25, 191
DdeI CTNAG 1 cut(s) 193
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco47I GGWCC 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 148
FaeI CATG 2 cut(s) 161, 210
FaiI YATR 8 cut(s) 17, 57, 98, 104, 159, 175, 188, 208
FaqI GGGAC 1 cut(s) 146
FatI CATG 2 cut(s) 157, 206
Fnu4HI GCNGC 1 cut(s) 75
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
GsuI CTGGAG 1 cut(s) 99
HaeIII GGCC 1 cut(s) 191
HapII CCGG 1 cut(s) 62
Hin1II CATG 2 cut(s) 161, 210
HinfI GANTC 2 cut(s) 236, 281
HpaII CCGG 1 cut(s) 62
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 2 cut(s) 241, 286
Hpy188III TCNNGA 1 cut(s) 182
Hpy8I GTNNAC 1 cut(s) 53
HpyAV CCTTC 1 cut(s) 49
HpyF3I CTNAG 1 cut(s) 193
Hsp92II CATG 2 cut(s) 161, 210
LpnPI CCDG 4 cut(s) 75, 129, 135, 162
Lsp1109I GCAGC 1 cut(s) 86
LweI GCATC 1 cut(s) 208
MaeIII GTNAC 2 cut(s) 65, 196
MboII GAAGA 1 cut(s) 275
MluCI AATT 1 cut(s) 141
MnlI CCTC 4 cut(s) 36, 91, 123, 202
MspI CCGG 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 63, 150
MvaI CCWGG 1 cut(s) 150
NciI CCSGG 1 cut(s) 63
NlaIII CATG 2 cut(s) 161, 210
NmuCI GTSAC 2 cut(s) 65, 196
NspI RCATGY 2 cut(s) 161, 210
NspV TTCGAA 1 cut(s) 234
PciI ACATGT 2 cut(s) 157, 206
PfeI GAWTC 2 cut(s) 236, 281
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 1 cut(s) 76
PscI ACATGT 2 cut(s) 157, 206
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspPI GGNCC 1 cut(s) 36
SatI GCNGC 1 cut(s) 75
Sau96I GGNCC 1 cut(s) 36
ScrFI CCNGG 2 cut(s) 63, 150
SetI ASST 4 cut(s) 41, 83, 115, 246
SfaNI GCATC 1 cut(s) 208
SfuI TTCGAA 1 cut(s) 234
SinI GGWCC 1 cut(s) 36
Sse9I AATT 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 61, 148
TaqI TCGA 2 cut(s) 28, 234
TaqII GACCGA 1 cut(s) 215
TasI AATT 1 cut(s) 141
TfiI GAWTC 2 cut(s) 236, 281
TscAI CASTG 1 cut(s) 201
TseFI GTSAC 2 cut(s) 65, 196
TseI GCWGC 1 cut(s) 74
Tsp45I GTSAC 2 cut(s) 65, 196
TspGWI ACGGA 1 cut(s) 49
TspRI CASTG 1 cut(s) 201
Van91I CCANNNNNTGG 1 cut(s) 122
VpaK11BI GGWCC 1 cut(s) 36
XceI RCATGY 2 cut(s) 161, 210
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.