Prupe.6G355700_v2.0.a1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000402
Physical Location & Seq
Forward (+)
30199433 .. 30200852
1420 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G355700.1

Sequence Viewer

Length: 798 bp
ATGGGTGGCATTCCATGGACAAGGGAAGAAGATCAATTGCTCAGGAAATGCGTAGAGCAGTATGGAGAAGGCAAATGGCATCGTGTCCCTCTCTTGGCTGGTCTAAACAGGTGCCGTAAGAGCTGTAGGCTGAGGTGGTTAAACTATCTCCGCCCAAACATCAAGAGAGGGAGCTTTGAAGAAGAGGAAGTTGATCTCATCATCAAGCTCCACAAGCTCCTAGGGAATAGGTGGTCATTAGTTGCAGCTCGACTTCCGGGAAGGACCGGTAACGATGTGAAGAACTACTGGAATTGTCACTTGAGCAAGAAGCTAAATGCTCAAGAAGCTGAAGACAAGAACAAGCATTGTGCAAGGAATGTGCAAGTCATGAGACCCCCAGCCTCAAACTATGCCAGCACAAACTCAAAGAGGCCATATTCAACAGCTCTAGACCAAGCTCCAAGTAACAATTTTTGTCAACCAGTTAATCTACTAGCACGAGAAGGGGGCAGCAGCAGCAGCACACAAATTCCAACGCCAATGCCAATGCCAATGCCGTGCTATATTGGAGATGGCCAGAATCAGATGTTTCAGGCAGAGCATGATGAGAGCAACAAGAATGTTCCAAGCGTGGAAGAAGAAGATATTAATGATGGGATTAATATGGGTGATTTTCCAATGGAGGGCCTTCCATTTAAAGGAGTTAGAGAACATGATCAAGATGATGATGCTGATGATGATGGGGTCCCCAACCACAACAAATGGGAATGGGACGACTCCATCTTGGGTGACGTGGACCTCTGGACTCATTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

266

Amino Acids

30.22

Weight (kDa)

5.53

Isoelectric Point (pI)

50.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 111
AciI CCGC 1 cut(s) 151
AcoI YGGCCR 1 cut(s) 556
AcsI RAATTY 1 cut(s) 510
AcuI CTGAAG 1 cut(s) 351
AfiI CCNNNNNNNGG 3 cut(s) 94, 665, 680
AgeI ACCGGT 1 cut(s) 266
AgsI TTSAA 2 cut(s) 179, 423
AjiI CACGTC 1 cut(s) 775
AluBI AGCT 9 cut(s) 123, 174, 208, 217, 248, 313, 329, 428, 440
AluI AGCT 9 cut(s) 123, 174, 208, 217, 248, 313, 329, 428, 440
Alw26I GTCTC 1 cut(s) 367
AoxI GGCC 3 cut(s) 413, 556, 667
ApeKI GCWGC 5 cut(s) 245, 492, 495, 498, 501
ApoI RAATTY 1 cut(s) 510
AseI ATTAAT 2 cut(s) 630, 642
AsiGI ACCGGT 1 cut(s) 266
AspA2I CCTAGG 1 cut(s) 220
AspS9I GGNCC 4 cut(s) 264, 667, 727, 778
AsuC2I CCSGG 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 662, 782
AvaII GGWCC 3 cut(s) 264, 727, 778
AvrII CCTAGG 1 cut(s) 220
BalI TGGCCA 1 cut(s) 558
BanI GGYRCC 1 cut(s) 111
BauI CACGAG 1 cut(s) 480
BbsI GAAGAC 1 cut(s) 339
BbvCI CCTCAGC 1 cut(s) 131
BbvI GCAGC 5 cut(s) 257, 504, 507, 510, 513
BccI CCATC 4 cut(s) 548, 629, 716, 770
BceAI ACGGC 2 cut(s) 99, 523
BclI TGATCA 1 cut(s) 697
BcnI CCSGG 1 cut(s) 258
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 3 cut(s) 221, 431, 476
BfmI CTRYAG 1 cut(s) 124
BisI GCNGC 5 cut(s) 246, 493, 496, 499, 502
BlnI CCTAGG 1 cut(s) 220
BlsI GCNGC 5 cut(s) 247, 494, 497, 500, 503
Bme1390I CCNGG 1 cut(s) 258
Bme18I GGWCC 3 cut(s) 264, 727, 778
BmgBI CACGTC 1 cut(s) 775
BmgT120I GGNCC 4 cut(s) 264, 667, 727, 778
BmiI GGNNCC 3 cut(s) 113, 728, 729
BmrFI CCNGG 1 cut(s) 258
BmsI GCATC 2 cut(s) 88, 700
BpiI GAAGAC 1 cut(s) 339
Bpu10I CCTNAGC 2 cut(s) 41, 131
BpuEI CTTGAG 2 cut(s) 306, 322
BpuMI CCSGG 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 367
BsaJI CCNNGG 2 cut(s) 14, 220
BsaWI WCCGGW 1 cut(s) 266
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 665, 680
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 2 cut(s) 293, 464
BseDI CCNNGG 2 cut(s) 14, 220
BseLI CCNNNNNNNGG 3 cut(s) 94, 665, 680
BseMII CTCAG 2 cut(s) 55, 122
BseNI ACTGG 2 cut(s) 293, 464
BseXI GCAGC 5 cut(s) 257, 504, 507, 510, 513
BseYI CCCAGC 1 cut(s) 379
BshFI GGCC 3 cut(s) 415, 558, 669
BshNI GGYRCC 1 cut(s) 111
BshTI ACCGGT 1 cut(s) 266
BsiSI CCGG 2 cut(s) 257, 267
BslFI GGGAC 3 cut(s) 71, 713, 767
BslI CCNNNNNNNGG 3 cut(s) 94, 665, 680
BsmAI GTCTC 1 cut(s) 367
BsmFI GGGAC 3 cut(s) 71, 713, 767
BsmI GAATGC 1 cut(s) 9
BsnI GGCC 3 cut(s) 415, 558, 669
Bso31I GGTCTC 1 cut(s) 367
Bsp143I GATC 3 cut(s) 31, 193, 697
Bsp19I CCATGG 1 cut(s) 14
BspACI CCGC 1 cut(s) 151
BspANI GGCC 3 cut(s) 415, 558, 669
BspCNI CTCAG 2 cut(s) 54, 123
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 3 cut(s) 113, 728, 729
BspT107I GGYRCC 1 cut(s) 111
BspTNI GGTCTC 1 cut(s) 367
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 2 cut(s) 293, 464
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 2 cut(s) 14, 220
BssMI GATC 3 cut(s) 31, 193, 697
BssSI CACGAG 1 cut(s) 480
BssT1I CCWWGG 2 cut(s) 14, 220
Bst2BI CACGAG 1 cut(s) 480
Bst6I CTCTTC 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 397
BstDEI CTNAG 2 cut(s) 41, 131
BstDSI CCRYGG 1 cut(s) 14
BstKTI GATC 3 cut(s) 34, 196, 700
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 3 cut(s) 31, 193, 697
BstMWI GCNNNNNNNGC 5 cut(s) 120, 214, 326, 498, 501
BstSCI CCNGG 1 cut(s) 256
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 5 cut(s) 257, 504, 507, 510, 513
BstV2I GAAGAC 1 cut(s) 339
BsuRI GGCC 3 cut(s) 415, 558, 669
BtgI CCRYGG 1 cut(s) 14
BtrI CACGTC 1 cut(s) 775
Cac8I GCNNGC 1 cut(s) 397
CciI TCATGA 1 cut(s) 369
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 4 cut(s) 264, 667, 727, 778
CspAI ACCGGT 1 cut(s) 266
CviAII CATG 4 cut(s) 15, 370, 584, 695
DdeI CTNAG 2 cut(s) 41, 131
DpnI GATC 3 cut(s) 33, 195, 699
DpnII GATC 3 cut(s) 31, 193, 697
DraI TTTAAA 1 cut(s) 679
EaeI YGGCCR 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 177
EarI CTCTTC 1 cut(s) 177
EciI GGCGGA 1 cut(s) 140
Eco130I CCWWGG 2 cut(s) 14, 220
Eco31I GGTCTC 1 cut(s) 367
Eco47I GGWCC 3 cut(s) 264, 727, 778
Eco57I CTGAAG 1 cut(s) 351
EcoO109I RGGNCCY 2 cut(s) 667, 727
EcoT14I CCWWGG 2 cut(s) 14, 220
ErhI CCWWGG 2 cut(s) 14, 220
FaeI CATG 4 cut(s) 18, 373, 587, 698
FaiI YATR 9 cut(s) 16, 63, 371, 393, 418, 546, 585, 647, 696
FaqI GGGAC 3 cut(s) 71, 713, 767
FatI CATG 4 cut(s) 14, 369, 583, 694
FbaI TGATCA 1 cut(s) 697
Fnu4HI GCNGC 5 cut(s) 246, 493, 496, 499, 502
Fsp4HI GCNGC 5 cut(s) 246, 493, 496, 499, 502
FspBI CTAG 3 cut(s) 221, 431, 476
GluI GCNGC 5 cut(s) 246, 493, 496, 499, 502
GsaI CCCAGC 1 cut(s) 383
HaeIII GGCC 3 cut(s) 415, 558, 669
HapII CCGG 2 cut(s) 257, 267
Hin1II CATG 4 cut(s) 18, 373, 587, 698
HincII GTYRAC 1 cut(s) 461
HindII GTYRAC 1 cut(s) 461
HinfI GANTC 3 cut(s) 562, 758, 787
HpaII CCGG 2 cut(s) 257, 267
HphI GGTGA 2 cut(s) 662, 782
Hpy166II GTNNAC 2 cut(s) 461, 778
Hpy188I TCNGA 1 cut(s) 567
Hpy188III TCNNGA 7 cut(s) 43, 163, 323, 370, 431, 701, 784
Hpy8I GTNNAC 2 cut(s) 461, 778
HpyAV CCTTC 4 cut(s) 62, 255, 479, 680
HpyCH4IV ACGT 1 cut(s) 774
HpyCH4V TGCA 3 cut(s) 245, 353, 364
HpyF10VI GCNNNNNNNGC 5 cut(s) 120, 214, 326, 498, 501
HpyF3I CTNAG 2 cut(s) 41, 131
HpySE526I ACGT 1 cut(s) 774
Hsp92II CATG 4 cut(s) 18, 373, 587, 698
KflI GGGWCCC 1 cut(s) 727
Ksp22I TGATCA 1 cut(s) 697
Kzo9I GATC 3 cut(s) 31, 193, 697
LmnI GCTCC 4 cut(s) 171, 213, 222, 445
Lsp1109I GCAGC 5 cut(s) 257, 504, 507, 510, 513
LweI GCATC 2 cut(s) 88, 700
MaeI CTAG 3 cut(s) 221, 431, 476
MaeII ACGT 1 cut(s) 774
MaeIII GTNAC 4 cut(s) 269, 296, 446, 770
MalI GATC 3 cut(s) 33, 195, 699
MboI GATC 3 cut(s) 31, 193, 697
MboII GAAGA 9 cut(s) 38, 41, 191, 194, 292, 344, 629, 632, 635
MfeI CAATTG 1 cut(s) 35
MlsI TGGCCA 1 cut(s) 558
MluCI AATT 4 cut(s) 35, 292, 451, 510
MluNI TGGCCA 1 cut(s) 558
MlyI GAGTC 2 cut(s) 752, 781
MmeI TCCRAC 1 cut(s) 539
MnlI CCTC 8 cut(s) 99, 126, 161, 178, 394, 405, 658, 791
Mox20I TGGCCA 1 cut(s) 558
MscI TGGCCA 1 cut(s) 558
MseI TTAA 6 cut(s) 140, 468, 630, 642, 678, 796
Msp20I TGGCCA 1 cut(s) 558
MspI CCGG 2 cut(s) 257, 267
MspR9I CCNGG 1 cut(s) 258
MunI CAATTG 1 cut(s) 35
Mva1269I GAATGC 1 cut(s) 9
MwoI GCNNNNNNNGC 5 cut(s) 120, 214, 326, 498, 501
NciI CCSGG 1 cut(s) 258
NcoI CCATGG 1 cut(s) 14
NdeII GATC 3 cut(s) 31, 193, 697
NlaIII CATG 4 cut(s) 18, 373, 587, 698
NlaIV GGNNCC 3 cut(s) 113, 728, 729
NmuCI GTSAC 2 cut(s) 296, 770
PagI TCATGA 1 cut(s) 369
PctI GAATGC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 562
PfoI TCCNGGA 1 cut(s) 256
PinAI ACCGGT 1 cut(s) 266
PkrI GCNGC 5 cut(s) 247, 494, 497, 500, 503
PleI GAGTC 2 cut(s) 752, 781
PpsI GAGTC 2 cut(s) 752, 781
PpuMI RGGWCCY 1 cut(s) 727
PshBI ATTAAT 2 cut(s) 630, 642
Psp5II RGGWCCY 1 cut(s) 727
PspFI CCCAGC 1 cut(s) 379
PspN4I GGNNCC 3 cut(s) 113, 728, 729
PspPI GGNCC 4 cut(s) 264, 667, 727, 778
PspPPI RGGWCCY 1 cut(s) 727
SaqAI TTAA 6 cut(s) 140, 468, 630, 642, 678, 796
SatI GCNGC 5 cut(s) 246, 493, 496, 499, 502
Sau3AI GATC 3 cut(s) 31, 193, 697
Sau96I GGNCC 4 cut(s) 264, 667, 727, 778
SchI GAGTC 2 cut(s) 752, 781
ScrFI CCNGG 1 cut(s) 258
SfaNI GCATC 2 cut(s) 88, 700
SfcI CTRYAG 1 cut(s) 124
SinI GGWCC 3 cut(s) 264, 727, 778
SmlI CTYRAG 2 cut(s) 301, 321
SmoI CTYRAG 2 cut(s) 301, 321
Sse9I AATT 4 cut(s) 35, 292, 451, 510
SsiI CCGC 1 cut(s) 151
SspMI CTAG 3 cut(s) 221, 431, 476
StyD4I CCNGG 1 cut(s) 256
StyI CCWWGG 2 cut(s) 14, 220
TaiI ACGT 1 cut(s) 777
TaqI TCGA 1 cut(s) 250
TasI AATT 4 cut(s) 35, 292, 451, 510
TfiI GAWTC 1 cut(s) 562
Tru1I TTAA 6 cut(s) 140, 468, 630, 642, 678, 796
Tru9I TTAA 6 cut(s) 140, 468, 630, 642, 678, 796
TseFI GTSAC 2 cut(s) 296, 770
TseI GCWGC 5 cut(s) 245, 492, 495, 498, 501
Tsp45I GTSAC 2 cut(s) 296, 770
VpaK11BI GGWCC 3 cut(s) 264, 727, 778
VspI ATTAAT 2 cut(s) 630, 642
XapI RAATTY 1 cut(s) 510
XbaI TCTAGA 1 cut(s) 430
XmaJI CCTAGG 1 cut(s) 220
XspI CTAG 3 cut(s) 221, 431, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.