MD09G1278400.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000402
Physical Location & Seq
Forward (+)
35513070 .. 35516365
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1278400.v1.1.491

Sequence Viewer

Length: 621 bp
ATGGAGGGATATAACGTTAACTTGAGTGTGATGAGAAAAGGTGCCTGGACTCGAGAGGAAGATGATCTTCTCAGGCGGTGCATAGAGACTCTTGGGGAAGGAAAGTGGCACCAAGTTCCTTACAAAGCGGGCTTAAACAGGTGCAGGAAGAGCTGCAGACTAAGATGGTTGAACTATCTGAAGCCAAATATCAAGAGAGGAGACTTTACAGAGGATGAAGTAGATCTTATAGTTAGACTTCACAAGCTTTTAGGAAACAGGTGGTCATTGATTGCTGGAAGACTTCCAGGAAGAACATCGAATGATGTGAAAAATTATTGGAACACTCAATTGCGGATCGATTCTGGCGTGAAAACGATGAAAAATAAATTCCAAGAAACGAGGAAGACCATAGCGATAAGACCTCAACCCCAGAAATTCATCCAAGGTTCATATTACTTGAACAGTAAAGAACCAATTCTGGACCACATTCAAGCAGCAGAAGATTTAAGTACGCTACCACAAACGTCGTCATCGACAAAGAATGGAAATGATTGGTGGAAAACCTTGTTAGAAGACGAGGATGCTTTTGAAAGAATTGCATGTCCCAGCCTTGAGTTAGAGGAAGAACACTTCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

207

Amino Acids

24.1

Weight (kDa)

8.83

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 4.4e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 74 9.9e-13 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 66 - 111 2.1e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 69 - 112 2.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 41, 108
AciI CCGC 3 cut(s) 76, 128, 334
AclI AACGTT 1 cut(s) 15
AclWI GGATC 1 cut(s) 344
AcsI RAATTY 2 cut(s) 368, 416
AcuI CTGAAG 2 cut(s) 200, 598
AfaI GTAC 1 cut(s) 493
AgsI TTSAA 4 cut(s) 172, 442, 473, 572
AjnI CCWGG 2 cut(s) 44, 286
AluBI AGCT 2 cut(s) 153, 247
AluI AGCT 2 cut(s) 153, 247
Alw26I GTCTC 2 cut(s) 80, 195
AlwI GGATC 1 cut(s) 344
Ama87I CYCGRG 1 cut(s) 51
ApeKI GCWGC 2 cut(s) 153, 476
ApoI RAATTY 2 cut(s) 368, 416
Asp700I GAANNNNTTC 1 cut(s) 456
AspS9I GGNCC 1 cut(s) 463
AvaI CYCGRG 1 cut(s) 51
AvaII GGWCC 1 cut(s) 463
BanI GGYRCC 2 cut(s) 41, 108
BbsI GAAGAC 3 cut(s) 286, 392, 561
BbvI GCAGC 2 cut(s) 140, 488
BccI CCATC 1 cut(s) 159
BciT130I CCWGG 2 cut(s) 46, 288
BcoDI GTCTC 2 cut(s) 80, 195
BfmI CTRYAG 1 cut(s) 154
BglII AGATCT 1 cut(s) 223
BisI GCNGC 2 cut(s) 154, 477
BlsI GCNGC 2 cut(s) 155, 478
Bme1390I CCNGG 2 cut(s) 46, 288
Bme18I GGWCC 1 cut(s) 463
BmeT110I CYCGRG 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 463
BmiI GGNNCC 2 cut(s) 43, 110
BmrFI CCNGG 2 cut(s) 46, 288
BmsI GCATC 1 cut(s) 553
BpiI GAAGAC 3 cut(s) 286, 392, 561
BpuEI CTTGAG 2 cut(s) 43, 614
Bsa29I ATCGAT 1 cut(s) 339
BsaJI CCNNGG 1 cut(s) 424
BseBI CCWGG 2 cut(s) 46, 288
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 1 cut(s) 424
BseGI GGATG 3 cut(s) 220, 420, 568
BseMII CTCAG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 2 cut(s) 140, 488
BseYI CCCAGC 1 cut(s) 587
BsgI GTGCAG 1 cut(s) 163
BshNI GGYRCC 2 cut(s) 41, 108
BshVI ATCGAT 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 570
BsmAI GTCTC 2 cut(s) 80, 195
BsmFI GGGAC 1 cut(s) 570
BsoBI CYCGRG 1 cut(s) 51
Bsp143I GATC 3 cut(s) 64, 223, 336
BspACI CCGC 3 cut(s) 76, 128, 334
BspCNI CTCAG 1 cut(s) 84
BspDI ATCGAT 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 43, 110
BspMAI CTGCAG 1 cut(s) 158
BspPI GGATC 1 cut(s) 344
BspQI GCTCTTC 1 cut(s) 143
BspT107I GGYRCC 2 cut(s) 41, 108
BssECI CCNNGG 1 cut(s) 424
BssMI GATC 3 cut(s) 64, 223, 336
BssT1I CCWWGG 1 cut(s) 424
Bst2UI CCWGG 2 cut(s) 46, 288
Bst4CI ACNGT 1 cut(s) 446
Bst6I CTCTTC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 71, 161
BstF5I GGATG 3 cut(s) 220, 420, 568
BstKTI GATC 3 cut(s) 67, 226, 339
BstMAI GTCTC 2 cut(s) 80, 195
BstMBI GATC 3 cut(s) 64, 223, 336
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstNI CCWGG 2 cut(s) 46, 288
BstNSI RCATGY 1 cut(s) 585
BstSCI CCNGG 2 cut(s) 44, 286
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 2 cut(s) 140, 488
BstV2I GAAGAC 3 cut(s) 286, 392, 561
BstX2I RGATCY 1 cut(s) 223
BstYI RGATCY 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 339
BsuTUI ATCGAT 1 cut(s) 339
BtsCI GGATG 3 cut(s) 220, 420, 568
Cac8I GCNNGC 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 463
ClaI ATCGAT 1 cut(s) 339
Csp6I GTAC 1 cut(s) 492
CviAII CATG 1 cut(s) 582
CviJI RGCY 5 cut(s) 132, 153, 184, 247, 591
CviKI_1 RGCY 5 cut(s) 132, 153, 184, 247, 591
CviQI GTAC 1 cut(s) 492
DdeI CTNAG 2 cut(s) 71, 161
DpnI GATC 3 cut(s) 66, 225, 338
DpnII GATC 3 cut(s) 64, 223, 336
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 424
Eco47I GGWCC 1 cut(s) 463
Eco57I CTGAAG 2 cut(s) 200, 598
Eco88I CYCGRG 1 cut(s) 51
EcoRII CCWGG 2 cut(s) 44, 286
EcoT14I CCWWGG 1 cut(s) 424
ErhI CCWWGG 1 cut(s) 424
FaeI CATG 1 cut(s) 585
FaiI YATR 6 cut(s) 12, 83, 230, 392, 433, 583
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 210, 242
FaqI GGGAC 1 cut(s) 570
FatI CATG 1 cut(s) 581
FauI CCCGC 1 cut(s) 121
Fnu4HI GCNGC 2 cut(s) 154, 477
FokI GGATG 3 cut(s) 227, 407, 575
Fsp4HI GCNGC 2 cut(s) 154, 477
GluI GCNGC 2 cut(s) 154, 477
GsaI CCCAGC 1 cut(s) 591
Hin1II CATG 1 cut(s) 585
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 3 cut(s) 49, 88, 341
HpaI GTTAAC 1 cut(s) 19
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 3 cut(s) 53, 193, 461
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 511
HpyAV CCTTC 1 cut(s) 92
HpyCH4III ACNGT 1 cut(s) 446
HpyCH4IV ACGT 2 cut(s) 15, 506
HpyCH4V TGCA 4 cut(s) 81, 144, 156, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 2 cut(s) 71, 161
HpySE526I ACGT 2 cut(s) 15, 506
Hsp92II CATG 1 cut(s) 585
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 3 cut(s) 64, 223, 336
LguI GCTCTTC 1 cut(s) 143
Lsp1109I GCAGC 2 cut(s) 140, 488
LweI GCATC 1 cut(s) 553
MaeII ACGT 2 cut(s) 15, 506
MalI GATC 3 cut(s) 66, 225, 338
MboI GATC 3 cut(s) 64, 223, 336
MboII GAAGA 9 cut(s) 59, 71, 160, 291, 303, 397, 494, 566, 617
MfeI CAATTG 1 cut(s) 329
MflI RGATCY 1 cut(s) 223
MluCI AATT 6 cut(s) 313, 329, 368, 416, 456, 576
MlyI GAGTC 2 cut(s) 43, 82
MnlI CCTC 7 cut(s) 49, 191, 205, 375, 414, 553, 595
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 3 cut(s) 18, 134, 488
MspR9I CCNGG 2 cut(s) 46, 288
MunI CAATTG 1 cut(s) 329
MvaI CCWGG 2 cut(s) 46, 288
MwoI GCNNNNNNNGC 1 cut(s) 150
NdeII GATC 3 cut(s) 64, 223, 336
NlaIII CATG 1 cut(s) 585
NlaIV GGNNCC 2 cut(s) 43, 110
NspI RCATGY 1 cut(s) 585
PaeR7I CTCGAG 1 cut(s) 51
PciSI GCTCTTC 1 cut(s) 143
PcsI WCGNNNNNNNCGW 2 cut(s) 345, 512
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 1 cut(s) 341
PfoI TCCNGGA 1 cut(s) 286
PkrI GCNGC 2 cut(s) 155, 478
PleI GAGTC 2 cut(s) 43, 82
PpsI GAGTC 2 cut(s) 43, 82
Psp1406I AACGTT 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 44, 286
PspFI CCCAGC 1 cut(s) 587
PspGI CCWGG 2 cut(s) 44, 286
PspN4I GGNNCC 2 cut(s) 43, 110
PspPI GGNCC 1 cut(s) 463
PstI CTGCAG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 223
RsaI GTAC 1 cut(s) 493
RsaNI GTAC 1 cut(s) 492
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 3 cut(s) 18, 134, 488
SatI GCNGC 2 cut(s) 154, 477
Sau3AI GATC 3 cut(s) 64, 223, 336
Sau96I GGNCC 1 cut(s) 463
SchI GAGTC 2 cut(s) 43, 82
ScrFI CCNGG 2 cut(s) 46, 288
SfaNI GCATC 1 cut(s) 553
SfcI CTRYAG 1 cut(s) 154
Sfr274I CTCGAG 1 cut(s) 51
SinI GGWCC 1 cut(s) 463
SlaI CTCGAG 1 cut(s) 51
SmlI CTYRAG 3 cut(s) 22, 51, 593
SmoI CTYRAG 3 cut(s) 22, 51, 593
Sse9I AATT 6 cut(s) 313, 329, 368, 416, 456, 576
SsiI CCGC 3 cut(s) 76, 128, 334
StyD4I CCNGG 2 cut(s) 44, 286
StyI CCWWGG 1 cut(s) 424
TaaI ACNGT 1 cut(s) 446
TaiI ACGT 2 cut(s) 18, 509
TaqI TCGA 4 cut(s) 52, 299, 339, 515
TasI AATT 6 cut(s) 313, 329, 368, 416, 456, 576
TfiI GAWTC 1 cut(s) 341
Tru1I TTAA 3 cut(s) 18, 134, 488
Tru9I TTAA 3 cut(s) 18, 134, 488
TseI GCWGC 2 cut(s) 153, 476
TspDTI ATGAA 4 cut(s) 231, 374, 409, 420
VpaK11BI GGWCC 1 cut(s) 463
XapI RAATTY 2 cut(s) 368, 416
XceI RCATGY 1 cut(s) 585
XhoI CTCGAG 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.