MD05G1276700.v1.1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0000402
Physical Location & Seq
Forward (+)
41136288 .. 41136819
532 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1276700.v1.1.491

Sequence Viewer

Length: 426 bp
ATGCACGTCGCCGTCGGTGGCCTTATGATCTCTAATCTGGTATATATACATATGGATGATAGTAATTTGTTGGGAATAATGAGGAAAGGTGCCTGGACTCAACAGGAAGATGATATTCTGAGGCAGTACGTTGAAAAGCATGGAGATGGAAAATGGCACCAGGTTCCTCGCGAAACAGGTCTGAACAGATGCAGGAAAAGCTTCAGACAGAGGTGGTTGAACTATTTGAAGCCGAATCTCAAAAGCGGACATTTTACAGAGGATGAAATAGATCTAATCCATAGACTTCATAGACTTTTGGGAAACAGGCAAGCCCCTTTATTTGGCAAACAAAAAAGAAACCGGCAAGTCATTTTATATTCCAAGCAAAAGCCATTTGCATGCTTGCATGAGCTAGTTATCATAAAGATATTACGTACCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

142

Amino Acids

16.68

Weight (kDa)

10.06

Isoelectric Point (pI)

45.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 29 - 76 5.2e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 32 - 91 2.3e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 89, 156
AccII CGCG 1 cut(s) 171
AciI CCGC 1 cut(s) 246
AcuI CTGAAG 1 cut(s) 187
AfaI GTAC 2 cut(s) 128, 418
AfiI CCNNNNNNNGG 1 cut(s) 323
AgsI TTSAA 3 cut(s) 134, 220, 229
AjiI CACGTC 1 cut(s) 7
AjnI CCWGG 2 cut(s) 92, 159
AluBI AGCT 2 cut(s) 201, 394
AluI AGCT 2 cut(s) 201, 394
AoxI GGCC 1 cut(s) 19
Asp700I GAANNNNTTC 1 cut(s) 200
BanI GGYRCC 2 cut(s) 89, 156
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 2 cut(s) 94, 161
BfaI CTAG 1 cut(s) 395
BglII AGATCT 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 94, 161
BmgBI CACGTC 1 cut(s) 7
BmiI GGNNCC 3 cut(s) 91, 158, 165
BmrFI CCNGG 2 cut(s) 94, 161
BmsI GCATC 1 cut(s) 179
BsaAI YACGTR 1 cut(s) 416
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse118I RCCGGY 1 cut(s) 342
BseBI CCWGG 2 cut(s) 94, 161
BseGI GGATG 2 cut(s) 61, 268
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMII CTCAG 1 cut(s) 110
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 1 cut(s) 21
BshNI GGYRCC 2 cut(s) 89, 156
BsiSI CCGG 1 cut(s) 343
BslI CCNNNNNNNGG 1 cut(s) 323
BsnI GGCC 1 cut(s) 21
Bsp143I GATC 2 cut(s) 27, 271
Bsp68I TCGCGA 1 cut(s) 171
BspACI CCGC 1 cut(s) 246
BspANI GGCC 1 cut(s) 21
BspCNI CTCAG 1 cut(s) 111
BspFNI CGCG 1 cut(s) 171
BspLI GGNNCC 3 cut(s) 91, 158, 165
BspT107I GGYRCC 2 cut(s) 89, 156
BsrFI RCCGGY 1 cut(s) 342
BssAI RCCGGY 1 cut(s) 342
BssMI GATC 2 cut(s) 27, 271
Bst2UI CCWGG 2 cut(s) 94, 161
BstBAI YACGTR 1 cut(s) 416
BstC8I GCNNGC 3 cut(s) 312, 382, 386
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 61, 268
BstFNI CGCG 1 cut(s) 171
BstKTI GATC 2 cut(s) 30, 274
BstMBI GATC 2 cut(s) 27, 271
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstNI CCWGG 2 cut(s) 94, 161
BstNSI RCATGY 1 cut(s) 384
BstSCI CCNGG 2 cut(s) 92, 159
BstSNI TACGTA 1 cut(s) 416
BstUI CGCG 1 cut(s) 171
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 1 cut(s) 21
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 2 cut(s) 61, 268
BtuMI TCGCGA 1 cut(s) 171
Cac8I GCNNGC 3 cut(s) 312, 382, 386
Cfr10I RCCGGY 1 cut(s) 342
CsiI ACCWGGT 1 cut(s) 159
Csp6I GTAC 2 cut(s) 127, 417
CviAII CATG 3 cut(s) 140, 381, 389
CviJI RGCY 6 cut(s) 21, 201, 232, 314, 373, 394
CviKI_1 RGCY 6 cut(s) 21, 201, 232, 314, 373, 394
CviQI GTAC 2 cut(s) 127, 417
DdeI CTNAG 1 cut(s) 119
DpnI GATC 2 cut(s) 29, 273
DpnII GATC 2 cut(s) 27, 271
Eco105I TACGTA 1 cut(s) 416
Eco57I CTGAAG 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 92, 159
FaeI CATG 3 cut(s) 143, 384, 392
FatI CATG 3 cut(s) 139, 380, 388
FauNDI CATATG 1 cut(s) 51
FokI GGATG 2 cut(s) 68, 275
FspBI CTAG 1 cut(s) 395
HaeIII GGCC 1 cut(s) 21
HapII CCGG 1 cut(s) 343
Hin1II CATG 3 cut(s) 143, 384, 392
HindIII AAGCTT 1 cut(s) 199
HinfI GANTC 2 cut(s) 97, 235
HpaII CCGG 1 cut(s) 343
Hpy188I TCNGA 3 cut(s) 120, 183, 206
Hpy188III TCNNGA 1 cut(s) 170
Hpy99I CGWCG 2 cut(s) 11, 17
HpyCH4IV ACGT 3 cut(s) 6, 129, 415
HpyCH4V TGCA 4 cut(s) 4, 192, 380, 388
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
HpyF3I CTNAG 1 cut(s) 119
HpySE526I ACGT 3 cut(s) 6, 129, 415
Hsp92II CATG 3 cut(s) 143, 384, 392
Kzo9I GATC 2 cut(s) 27, 271
LweI GCATC 1 cut(s) 179
MabI ACCWGGT 1 cut(s) 159
MaeI CTAG 1 cut(s) 395
MaeII ACGT 3 cut(s) 6, 129, 415
MalI GATC 2 cut(s) 29, 273
MboI GATC 2 cut(s) 27, 271
MboII GAAGA 1 cut(s) 119
MflI RGATCY 1 cut(s) 271
MluCI AATT 1 cut(s) 64
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 5 cut(s) 75, 114, 177, 204, 253
MroXI GAANNNNTTC 1 cut(s) 200
MslI CAYNNNNRTG 3 cut(s) 54, 144, 379
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 2 cut(s) 94, 161
MvaI CCWGG 2 cut(s) 94, 161
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeI CATATG 1 cut(s) 51
NdeII GATC 2 cut(s) 27, 271
NlaIII CATG 3 cut(s) 143, 384, 392
NlaIV GGNNCC 3 cut(s) 91, 158, 165
NruI TCGCGA 1 cut(s) 171
NspI RCATGY 1 cut(s) 384
PaeI GCATGC 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 1 cut(s) 235
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
Ppu21I YACGTR 1 cut(s) 416
Psp6I CCWGG 2 cut(s) 92, 159
PspGI CCWGG 2 cut(s) 92, 159
PspN4I GGNNCC 3 cut(s) 91, 158, 165
PsuI RGATCY 1 cut(s) 271
RruI TCGCGA 1 cut(s) 171
RsaI GTAC 2 cut(s) 128, 418
RsaNI GTAC 2 cut(s) 127, 417
RseI CAYNNNNRTG 3 cut(s) 54, 144, 379
Sau3AI GATC 2 cut(s) 27, 271
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 94, 161
SexAI ACCWGGT 1 cut(s) 159
SfaNI GCATC 1 cut(s) 179
SmiMI CAYNNNNRTG 3 cut(s) 54, 144, 379
SnaBI TACGTA 1 cut(s) 416
SphI GCATGC 1 cut(s) 384
Sse9I AATT 1 cut(s) 64
SsiI CCGC 1 cut(s) 246
SspMI CTAG 1 cut(s) 395
StyD4I CCNGG 2 cut(s) 92, 159
TaiI ACGT 3 cut(s) 9, 132, 418
TasI AATT 1 cut(s) 64
TfiI GAWTC 1 cut(s) 235
TspDTI ATGAA 2 cut(s) 278, 279
XceI RCATGY 1 cut(s) 384
XmnI GAANNNNTTC 1 cut(s) 200
XspI CTAG 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.