Rh4AG199500
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000402
Physical Location & Seq
Forward (+)
48425990 .. 48428844
2855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG199500.1

Sequence Viewer

Length: 558 bp
ATGTACATACTTGCAGGCTTAAAGAGATGCAGAAAGAGCTGTAGAATGAGGTGGTTGAACTACCTGAAGCCCACCATCAAGAGAGGAGAATTTGAAGATGATGAAGTCGATCTGATGATTAAGCTTTATAAGCTTTTAGGAAACAGGTGGTCATTGATTGCTGGCCGACTTCCAGGAAGAACCTCAAATGATGTGAAAAACTATTGGAATCCTCGGCGAAGGAGAAATATGGATTTGAACATCGAAAAAGACAAATCTCGACAAATGACAAAGACCCTTATAATAAAGCCTCGACCACGAACCTTCACAAAAAGTTTACATATTCCGGGTGACAGAGCAGCAACCTCAAAGAATGCTAATATAAACATATCATTACCTCCAGTAAATGGACTTGATGAGTGGAAAATTGTACCAGTGGAACATGTCCCTACAAACTTATGGGTTCAAGATATGGCCTCAGTGACCGAAACATGTGTCAATGTTGCCGAACGAAGTTTCGAATCTGACCTTTGGCATTTTCTCCAAGAAGAGATGAGAGAACAAGATTCAGAAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

185

Amino Acids

21.78

Weight (kDa)

9.54

Isoelectric Point (pI)

62.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 28 - 70 1.6e-12 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 32 - 71 1e-05 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 129, 281
AccB7I CCANNNNNTGG 1 cut(s) 386
AcoI YGGCCR 1 cut(s) 163
AcsI RAATTY 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 2 cut(s) 5, 411
AfiI CCNNNNNNNGG 1 cut(s) 386
AflIII ACRYGT 2 cut(s) 421, 470
AgsI TTSAA 4 cut(s) 58, 95, 238, 446
AjnI CCWGG 1 cut(s) 172
AluBI AGCT 3 cut(s) 39, 124, 133
AluI AGCT 3 cut(s) 39, 124, 133
AoxI GGCC 2 cut(s) 163, 453
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 89
ArsI GACNNNNNNTTYG 2 cut(s) 459, 491
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 341
AsuII TTCGAA 1 cut(s) 498
BbvI GCAGC 1 cut(s) 350
BccI CCATC 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 174
BcnI CCSGG 1 cut(s) 327
BfmI CTRYAG 1 cut(s) 40
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 2 cut(s) 174, 327
BmrFI CCNGG 2 cut(s) 174, 327
BmsI GCATC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 363
Bpu14I TTCGAA 1 cut(s) 498
BpuMI CCSGG 1 cut(s) 327
BsaJI CCNNGG 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse1I ACTGG 2 cut(s) 380, 413
BseBI CCWGG 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 212
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 1 cut(s) 471
BseNI ACTGG 2 cut(s) 380, 413
BseRI GAGGAG 1 cut(s) 99
BseXI GCAGC 1 cut(s) 350
BshFI GGCC 2 cut(s) 165, 455
BsiSI CCGG 1 cut(s) 326
BslFI GGGAC 1 cut(s) 410
BslI CCNNNNNNNGG 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 410
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 2 cut(s) 165, 455
Bsp119I TTCGAA 1 cut(s) 498
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 1 cut(s) 109
BspANI GGCC 2 cut(s) 165, 455
BspCNI CTCAG 1 cut(s) 470
BspT104I TTCGAA 1 cut(s) 498
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 2 cut(s) 380, 413
BssECI CCNNGG 1 cut(s) 212
BssMI GATC 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 174
Bst6I CTCTTC 1 cut(s) 522
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 498
BstC8I GCNNGC 2 cut(s) 16, 163
BstDEI CTNAG 1 cut(s) 457
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 2 cut(s) 36, 130
BstNI CCWGG 1 cut(s) 174
BstNSI RCATGY 2 cut(s) 425, 474
BstSCI CCNGG 2 cut(s) 172, 325
BstSFI CTRYAG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 350
BsuRI GGCC 2 cut(s) 165, 455
BtsIMutI CAGTG 2 cut(s) 420, 465
Cac8I GCNNGC 2 cut(s) 16, 163
Csp6I GTAC 2 cut(s) 4, 410
CviAII CATG 2 cut(s) 422, 471
CviJI RGCY 8 cut(s) 18, 39, 70, 124, 133, 165, 289, 455
CviKI_1 RGCY 8 cut(s) 18, 39, 70, 124, 133, 165, 289, 455
CviQI GTAC 2 cut(s) 4, 410
DdeI CTNAG 1 cut(s) 457
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 163
Eam1104I CTCTTC 1 cut(s) 522
EarI CTCTTC 1 cut(s) 522
Eco57I CTGAAG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 172
FaeI CATG 2 cut(s) 425, 474
FaqI GGGAC 1 cut(s) 410
FatI CATG 2 cut(s) 421, 470
Fnu4HI GCNGC 1 cut(s) 339
Fsp4HI GCNGC 1 cut(s) 339
GluI GCNGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 2 cut(s) 165, 455
HapII CCGG 1 cut(s) 326
Hin1II CATG 2 cut(s) 425, 474
HindIII AAGCTT 2 cut(s) 122, 131
HinfI GANTC 3 cut(s) 208, 500, 545
HpaII CCGG 1 cut(s) 326
HphI GGTGA 1 cut(s) 341
Hpy166II GTNNAC 1 cut(s) 317
Hpy188I TCNGA 4 cut(s) 114, 505, 550, 557
Hpy188III TCNNGA 3 cut(s) 79, 258, 446
Hpy8I GTNNAC 1 cut(s) 317
HpyAV CCTTC 2 cut(s) 213, 313
HpyCH4V TGCA 2 cut(s) 14, 30
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 130
HpyF3I CTNAG 1 cut(s) 457
Hsp92II CATG 2 cut(s) 425, 474
Kzo9I GATC 1 cut(s) 109
LpnPI CCDG 8 cut(s) 77, 130, 147, 159, 186, 339, 393, 426
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 1 cut(s) 17
MaeIII GTNAC 2 cut(s) 329, 460
MalI GATC 1 cut(s) 111
MboI GATC 1 cut(s) 109
MboII GAAGA 3 cut(s) 107, 189, 539
MluCI AATT 2 cut(s) 89, 405
MnlI CCTC 8 cut(s) 42, 77, 193, 222, 300, 355, 387, 466
MseI TTAA 2 cut(s) 20, 120
MspI CCGG 1 cut(s) 326
MspR9I CCNGG 2 cut(s) 174, 327
Mva1269I GAATGC 1 cut(s) 358
MvaI CCWGG 1 cut(s) 174
MwoI GCNNNNNNNGC 2 cut(s) 36, 130
NciI CCSGG 1 cut(s) 327
NdeII GATC 1 cut(s) 109
NlaIII CATG 2 cut(s) 425, 474
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 2 cut(s) 329, 460
NspI RCATGY 2 cut(s) 425, 474
NspV TTCGAA 1 cut(s) 498
PciI ACATGT 2 cut(s) 421, 470
PctI GAATGC 1 cut(s) 358
PfeI GAWTC 3 cut(s) 208, 500, 545
PflMI CCANNNNNTGG 1 cut(s) 386
PfoI TCCNGGA 1 cut(s) 172
PkrI GCNGC 1 cut(s) 340
PscI ACATGT 2 cut(s) 421, 470
PsiI TTATAA 2 cut(s) 129, 281
Psp6I CCWGG 1 cut(s) 172
PspGI CCWGG 1 cut(s) 172
RsaI GTAC 2 cut(s) 5, 411
RsaNI GTAC 2 cut(s) 4, 410
SaqAI TTAA 2 cut(s) 20, 120
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 1 cut(s) 109
ScrFI CCNGG 2 cut(s) 174, 327
SfaNI GCATC 1 cut(s) 17
SfcI CTRYAG 1 cut(s) 40
SfuI TTCGAA 1 cut(s) 498
Sse9I AATT 2 cut(s) 89, 405
StyD4I CCNGG 2 cut(s) 172, 325
TaqI TCGA 5 cut(s) 108, 243, 259, 292, 498
TaqII GACCGA 1 cut(s) 479
TasI AATT 2 cut(s) 89, 405
TatI WGTACW 1 cut(s) 3
TfiI GAWTC 3 cut(s) 208, 500, 545
Tru1I TTAA 2 cut(s) 20, 120
Tru9I TTAA 2 cut(s) 20, 120
TscAI CASTG 2 cut(s) 420, 465
TseFI GTSAC 2 cut(s) 329, 460
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 2 cut(s) 329, 460
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 2 cut(s) 420, 465
Van91I CCANNNNNTGG 1 cut(s) 386
XapI RAATTY 1 cut(s) 89
XceI RCATGY 2 cut(s) 425, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.