Rorug01G0050500
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000402
Physical Location & Seq
Forward (+)
8250655 .. 8251221
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0050500.1

Sequence Viewer

Length: 567 bp
ATGTCTAGATTACAGGAATATCGGTTTCATACCTTGAATAATGGGGAAGGAAAGATTAGACGAAGCAGGGTGGTGCGGTGGGTTGCTCCTCTGGTGGGTTTTTTGAAGATTAATGTCGATGGGGCATTCGATCATGTGACCCGAAAGGGGGGAGCGGGCTTTGTGATTCGTAATGAACTCGGGGTTATGTTGGCAGGAGGAGCTTGTCCTCTCACTGGGTTATTGTCTCCGGAGCACGGGGAGGTGCTAGCTTGTAAGAAGGCAATGGAATTTGTGCTGGACCATGCTTTCTTTCCTGCCATTTTGGAGACAGATGCGTTGGTAGTTCAAGGTCAGTTGAGTGTTTCTACTACTGGTAATACGTCTGTTCTGGGACGATTATATGATGCTATGGTGACTATGTTGCAGACTCATTCTTTTGTGAAGGTGACTCATGTAGGCCGCCTGGGCAATGGTGTAGCCCATCAGTTAGCAGCTTATGCTTGCTCTTTGCAGCAAGATTGTTTTTATTTTTCTACTCCTCCATTTCTTTCAGCTGCAGTTGCAGCGGAACTTTGTATGGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

188

Amino Acids

20.34

Weight (kDa)

8.32

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 38 - 161 1.2e-19 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 155
AccIII TCCGGA 1 cut(s) 229
AciI CCGC 4 cut(s) 76, 155, 442, 548
AcsI RAATTY 1 cut(s) 269
AfiI CCNNNNNNNGG 5 cut(s) 95, 147, 148, 215, 236
AgsI TTSAA 3 cut(s) 37, 106, 329
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 4 cut(s) 203, 251, 476, 536
AluI AGCT 4 cut(s) 203, 251, 476, 536
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 2 cut(s) 231, 302
Ama87I CYCGRG 1 cut(s) 179
Aor13HI TCCGGA 1 cut(s) 229
AoxI GGCC 1 cut(s) 439
ApeKI GCWGC 4 cut(s) 473, 493, 536, 545
ApoI RAATTY 1 cut(s) 269
AseI ATTAAT 1 cut(s) 111
AspS9I GGNCC 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 406, 439
AsuNHI GCTAGC 1 cut(s) 247
AvaI CYCGRG 1 cut(s) 179
AvaII GGWCC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 4 cut(s) 485, 505, 523, 557
BccI CCATC 2 cut(s) 113, 471
BciT130I CCWGG 1 cut(s) 446
BcoDI GTCTC 2 cut(s) 231, 302
BfaI CTAG 2 cut(s) 6, 248
BfmI CTRYAG 1 cut(s) 537
BglI GCCNNNNNGGC 1 cut(s) 447
BisI GCNGC 5 cut(s) 442, 474, 494, 537, 546
BlsI GCNGC 5 cut(s) 443, 475, 495, 538, 547
Bme1390I CCNGG 1 cut(s) 446
Bme18I GGWCC 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 280
BmrFI CCNGG 1 cut(s) 446
BmrI ACTGGG 1 cut(s) 225
BmsI GCATC 2 cut(s) 304, 376
BmtI GCTAGC 1 cut(s) 251
BmuI ACTGGG 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 445
BsaWI WCCGGW 1 cut(s) 229
Bsc4I CCNNNNNNNGG 5 cut(s) 95, 147, 148, 215, 236
Bse1I ACTGG 2 cut(s) 220, 358
Bse3DI GCAATG 2 cut(s) 270, 457
BseAI TCCGGA 1 cut(s) 229
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 445
BseLI CCNNNNNNNGG 5 cut(s) 95, 147, 148, 215, 236
BseMI GCAATG 2 cut(s) 270, 457
BseNI ACTGG 2 cut(s) 220, 358
BseRI GAGGAG 3 cut(s) 78, 213, 510
BseXI GCAGC 4 cut(s) 485, 505, 523, 557
BshFI GGCC 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 237
BsiHKCI CYCGRG 1 cut(s) 179
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 387
BslI CCNNNNNNNGG 5 cut(s) 95, 147, 148, 215, 236
BsmAI GTCTC 2 cut(s) 231, 302
BsmFI GGGAC 1 cut(s) 387
BsmI GAATGC 1 cut(s) 125
BsnI GGCC 1 cut(s) 441
BsoBI CYCGRG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 237
Bsp13I TCCGGA 1 cut(s) 229
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 4 cut(s) 76, 155, 442, 548
BspANI GGCC 1 cut(s) 441
BspEI TCCGGA 1 cut(s) 229
BspMAI CTGCAG 1 cut(s) 541
BspOI GCTAGC 1 cut(s) 251
BsrBI CCGCTC 1 cut(s) 155
BsrDI GCAATG 2 cut(s) 270, 457
BsrI ACTGG 2 cut(s) 220, 358
BssECI CCNNGG 1 cut(s) 445
BssMI GATC 1 cut(s) 130
Bst2UI CCWGG 1 cut(s) 446
BstAPI GCANNNNNTGC 1 cut(s) 479
BstC8I GCNNGC 3 cut(s) 157, 249, 484
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 2 cut(s) 231, 302
BstMBI GATC 1 cut(s) 130
BstMWI GCNNNNNNNGC 5 cut(s) 200, 447, 479, 542, 545
BstNI CCWGG 1 cut(s) 446
BstSCI CCNGG 1 cut(s) 444
BstSFI CTRYAG 1 cut(s) 537
BstV1I GCAGC 4 cut(s) 485, 505, 523, 557
BsuRI GGCC 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 3 cut(s) 157, 249, 484
Cfr13I GGNCC 1 cut(s) 280
CviAII CATG 3 cut(s) 134, 284, 434
CviJI RGCY 7 cut(s) 159, 203, 251, 441, 461, 476, 536
CviKI_1 RGCY 7 cut(s) 159, 203, 251, 441, 461, 476, 536
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 280
Eco88I CYCGRG 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 444
FaeI CATG 3 cut(s) 137, 287, 437
FaqI GGGAC 1 cut(s) 387
FatI CATG 3 cut(s) 133, 283, 433
FauI CCCGC 1 cut(s) 148
Fnu4HI GCNGC 5 cut(s) 442, 474, 494, 537, 546
Fsp4HI GCNGC 5 cut(s) 442, 474, 494, 537, 546
FspBI CTAG 2 cut(s) 6, 248
GluI GCNGC 5 cut(s) 442, 474, 494, 537, 546
HaeIII GGCC 1 cut(s) 441
HapII CCGG 1 cut(s) 230
Hin1II CATG 3 cut(s) 137, 287, 437
HinfI GANTC 3 cut(s) 166, 409, 430
HpaII CCGG 1 cut(s) 230
HphI GGTGA 2 cut(s) 406, 439
Hpy188III TCNNGA 2 cut(s) 6, 230
HpyAV CCTTC 3 cut(s) 41, 253, 418
HpyCH4IV ACGT 1 cut(s) 362
HpyCH4V TGCA 4 cut(s) 406, 493, 539, 545
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 447, 479, 542, 545
HpySE526I ACGT 1 cut(s) 362
Hsp92II CATG 3 cut(s) 137, 287, 437
Kpn2I TCCGGA 1 cut(s) 229
Kzo9I GATC 1 cut(s) 130
LmnI GCTCC 4 cut(s) 91, 152, 200, 232
Lsp1109I GCAGC 4 cut(s) 485, 505, 523, 557
LweI GCATC 2 cut(s) 304, 376
MaeI CTAG 2 cut(s) 6, 248
MaeII ACGT 1 cut(s) 362
MaeIII GTNAC 3 cut(s) 136, 394, 427
MalI GATC 1 cut(s) 132
MbiI CCGCTC 1 cut(s) 155
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 118
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 1 cut(s) 269
MlyI GAGTC 2 cut(s) 403, 424
MnlI CCTC 5 cut(s) 99, 191, 219, 235, 531
MroI TCCGGA 1 cut(s) 229
MseI TTAA 1 cut(s) 111
MspA1I CMGCKG 2 cut(s) 536, 548
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 446
Mva1269I GAATGC 1 cut(s) 125
MvaI CCWGG 1 cut(s) 446
MwoI GCNNNNNNNGC 5 cut(s) 200, 447, 479, 542, 545
NdeII GATC 1 cut(s) 130
NheI GCTAGC 1 cut(s) 247
NlaIII CATG 3 cut(s) 137, 287, 437
NmuCI GTSAC 3 cut(s) 136, 394, 427
PctI GAATGC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 5 cut(s) 443, 475, 495, 538, 547
PleI GAGTC 2 cut(s) 403, 424
PpsI GAGTC 2 cut(s) 403, 424
PshBI ATTAAT 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspPI GGNCC 1 cut(s) 280
PstI CTGCAG 1 cut(s) 541
PvuII CAGCTG 1 cut(s) 536
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 5 cut(s) 442, 474, 494, 537, 546
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 280
SchI GAGTC 2 cut(s) 403, 424
ScrFI CCNGG 1 cut(s) 446
SduI GDGCHC 1 cut(s) 237
SetI ASST 9 cut(s) 35, 205, 246, 253, 334, 365, 429, 478, 538
SfaNI GCATC 2 cut(s) 304, 376
SfcI CTRYAG 1 cut(s) 537
SinI GGWCC 1 cut(s) 280
Sse9I AATT 1 cut(s) 269
SsiI CCGC 4 cut(s) 76, 155, 442, 548
SspMI CTAG 2 cut(s) 6, 248
StyD4I CCNGG 1 cut(s) 444
TaiI ACGT 1 cut(s) 365
TaqI TCGA 2 cut(s) 117, 129
TasI AATT 1 cut(s) 269
TauI GCSGC 1 cut(s) 444
TfiI GAWTC 1 cut(s) 166
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 3 cut(s) 136, 394, 427
TseI GCWGC 4 cut(s) 473, 493, 536, 545
Tsp45I GTSAC 3 cut(s) 136, 394, 427
TspDTI ATGAA 2 cut(s) 17, 189
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 280
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 1 cut(s) 269
XbaI TCTAGA 1 cut(s) 5
XspI CTAG 2 cut(s) 6, 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.