FvH4_5g34660
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000402
Physical Location & Seq
Forward (+)
25379657 .. 25381033
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g34660.t2

Sequence Viewer

Length: 384 bp
ATGGAGGAGCAGACGGGTTTGAGAAAAGGCGCATGGACGAGAGAAGAAGATAATATTTTGAGGCAGTGCGTCGCAAAGCATGGAGAAGGAAAATGGCACCAGATTCCTGCAGCTGCAGGCTTGAAAAGATGCAGGAAGAGCTGTAGGCTAAGGTGGCTGAATTATCTGAAACCGGATATAAAGAGAGGAGACTTTGAGGATGCTGAAGTAGATCTCATCATTAGGCTTCACAAACTCTTAGGCAACAGGTGGTCCTTGATTGCTGGAAGACTTCCAGGAAGAACAACAAATGATGTAAAAAACTTTTGGAACATGAAGCAGCGACAGGAAAACCCACGAAGACTCTCAAACAGAGAACAGAAATCGCAGGACATTGTGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

128

Amino Acids

15.02

Weight (kDa)

10.19

Isoelectric Point (pI)

52.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 9 - 56 1.8e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 12 - 70 8.7e-15 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 62 - 105 6.2e-14 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 225
AgsI TTSAA 1 cut(s) 124
AjnI CCWGG 1 cut(s) 274
AluBI AGCT 2 cut(s) 113, 141
AluI AGCT 2 cut(s) 113, 141
Alw26I GTCTC 1 cut(s) 183
ApeKI GCWGC 3 cut(s) 110, 113, 319
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 252
AvaII GGWCC 1 cut(s) 252
BanI GGYRCC 1 cut(s) 96
BbsI GAAGAC 2 cut(s) 274, 346
BbvI GCAGC 3 cut(s) 100, 122, 331
BciT130I CCWGG 1 cut(s) 276
BcoDI GTCTC 1 cut(s) 183
BfmI CTRYAG 3 cut(s) 108, 114, 142
BglII AGATCT 1 cut(s) 211
BisI GCNGC 3 cut(s) 111, 114, 320
BlsI GCNGC 3 cut(s) 112, 115, 321
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 252
BmiI GGNNCC 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 2 cut(s) 119, 190
BpiI GAAGAC 2 cut(s) 274, 346
Bpu10I CCTNAGC 1 cut(s) 149
BsaWI WCCGGW 1 cut(s) 172
BseBI CCWGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 205
BseRI GAGGAG 2 cut(s) 20, 201
BseXI GCAGC 3 cut(s) 100, 122, 331
BshNI GGYRCC 1 cut(s) 96
BsiSI CCGG 1 cut(s) 173
BsmAI GTCTC 1 cut(s) 183
Bsp143I GATC 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 98
BspMAI CTGCAG 2 cut(s) 112, 118
BspQI GCTCTTC 1 cut(s) 131
BspT107I GGYRCC 1 cut(s) 96
BssMI GATC 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 149, 238
BstF5I GGATG 1 cut(s) 205
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 1 cut(s) 211
BstMWI GCNNNNNNNGC 2 cut(s) 138, 154
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstSFI CTRYAG 3 cut(s) 108, 114, 142
BstV1I GCAGC 3 cut(s) 100, 122, 331
BstV2I GAAGAC 2 cut(s) 274, 346
BstX2I RGATCY 1 cut(s) 211
BstYI RGATCY 1 cut(s) 211
BtsCI GGATG 1 cut(s) 205
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 118
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 252
CseI GACGC 1 cut(s) 58
CviAII CATG 3 cut(s) 33, 80, 313
CviJI RGCY 6 cut(s) 113, 120, 141, 148, 157, 226
CviKI_1 RGCY 6 cut(s) 113, 120, 141, 148, 157, 226
DdeI CTNAG 2 cut(s) 149, 238
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco47I GGWCC 1 cut(s) 252
Eco57I CTGAAG 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 274
FaeI CATG 3 cut(s) 36, 83, 316
FaiI YATR 4 cut(s) 34, 81, 179, 314
FatI CATG 3 cut(s) 32, 79, 312
Fnu4HI GCNGC 3 cut(s) 111, 114, 320
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 3 cut(s) 111, 114, 320
GlaI GCGC 1 cut(s) 31
GluI GCNGC 3 cut(s) 111, 114, 320
HapII CCGG 1 cut(s) 173
HgaI GACGC 1 cut(s) 58
HhaI GCGC 1 cut(s) 32
Hin1II CATG 3 cut(s) 36, 83, 316
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HinfI GANTC 2 cut(s) 103, 342
HpaII CCGG 1 cut(s) 173
Hpy188I TCNGA 1 cut(s) 168
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 80
HpyCH4V TGCA 3 cut(s) 110, 116, 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 154
HpyF3I CTNAG 2 cut(s) 149, 238
Hsp92II CATG 3 cut(s) 36, 83, 316
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 211
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 7
Lsp1109I GCAGC 3 cut(s) 100, 122, 331
LweI GCATC 2 cut(s) 119, 190
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 6 cut(s) 56, 59, 148, 279, 291, 351
MflI RGATCY 1 cut(s) 211
MluCI AATT 1 cut(s) 160
MlyI GAGTC 1 cut(s) 336
MnlI CCTC 3 cut(s) 54, 179, 190
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 1 cut(s) 173
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 138, 154
NdeII GATC 1 cut(s) 211
NlaIII CATG 3 cut(s) 36, 83, 316
NlaIV GGNNCC 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 103
PfoI TCCNGGA 1 cut(s) 274
PkrI GCNGC 3 cut(s) 112, 115, 321
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 1 cut(s) 98
PspPI GGNCC 1 cut(s) 252
PstI CTGCAG 2 cut(s) 112, 118
PsuI RGATCY 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 113
SapI GCTCTTC 1 cut(s) 131
SatI GCNGC 3 cut(s) 111, 114, 320
Sau3AI GATC 1 cut(s) 211
Sau96I GGNCC 1 cut(s) 252
SchI GAGTC 1 cut(s) 336
ScrFI CCNGG 1 cut(s) 276
SetI ASST 4 cut(s) 115, 143, 155, 251
SfaNI GCATC 2 cut(s) 119, 190
SfcI CTRYAG 3 cut(s) 108, 114, 142
SinI GGWCC 1 cut(s) 252
Sse9I AATT 1 cut(s) 160
SspI AATATT 1 cut(s) 55
StyD4I CCNGG 1 cut(s) 274
TasI AATT 1 cut(s) 160
TfiI GAWTC 1 cut(s) 103
TscAI CASTG 1 cut(s) 71
TseI GCWGC 3 cut(s) 110, 113, 319
TspDTI ATGAA 1 cut(s) 329
TspRI CASTG 1 cut(s) 71
VpaK11BI GGWCC 1 cut(s) 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.