Prupe.6G176200_v2.0.a1
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000402
Physical Location & Seq
Forward (+)
18058586 .. 18062855
4270 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G176200.1

Sequence Viewer

Length: 732 bp
ATGGAGGGTAATAATTTGTTGAGAGTGAGAAAAGGTGCATGGACTAGAGAGGAAGATGAACTTCTCAGGCAATACATTCAACAGTACGGTGAAGGAAAATGGCATCAGGTTTCTCTCAAAGCAGGCTTGAACAGATGCAGGAAAAGCTGTAGACTGAGGTGGTTGAACTACTTGAGGCCAAATATCAAAAGAGGAGACTTTACAGAAGATGAAGTGGATCTCATGGTTAGGCTTCGAAAGCTTTTAGGAAACAGGTGGTCGTTGATTGCTGGAAGAATTCCTGGAAGAACATCAAACGATGTGAAAAACTACTGGAGCACCCGACTAAGGAAAAATAAGTCTTCTGAGGCCGAAAAAGATAAAACCCTAGAAACAACAAAGACAGTAATATTAAGGCCTCAACCACGAACCTTCTCCAAAAAGTCAAATTGTTTGAGTAGCCCAGCTCCAACTTTACAGCATATTCAATTACAAGAGAATTTTAACTGGCCATTGCCATCATCACCGCCTATAGAAAATGGAATTGATGAGTGGAAAAGCCAATTAGCTGATACGAACAGTGTTGAAAGAGCAATGTGTTCTGGTTTTCAGTTGGAGGAAGATTTCTTCACAAACTTTTGGGTTGAGAATATAGCCCAAAACACAGGAACTGGTGTAAATTCTGCTGACGAAGGCCTGCTGAGTTACAGTGACTTCTCTTTTCATCTTTGGAATTTTTCAAAAGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

244

Amino Acids

28.3

Weight (kDa)

9.26

Isoelectric Point (pI)

45.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 151
AciI CCGC 1 cut(s) 506
AclWI GGATC 1 cut(s) 225
AcoI YGGCCR 1 cut(s) 488
AcsI RAATTY 4 cut(s) 276, 478, 658, 712
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 327
AgsI TTSAA 6 cut(s) 80, 130, 166, 467, 566, 720
AjnI CCWGG 1 cut(s) 280
AluBI AGCT 4 cut(s) 147, 241, 446, 548
AluI AGCT 4 cut(s) 147, 241, 446, 548
Alw21I GWGCWC 1 cut(s) 320
Alw26I GTCTC 1 cut(s) 189
AlwI GGATC 1 cut(s) 225
AlwNI CAGNNNCTG 1 cut(s) 650
AoxI GGCC 5 cut(s) 176, 348, 395, 488, 673
ApoI RAATTY 4 cut(s) 276, 478, 658, 712
AsuHPI GGTGA 2 cut(s) 101, 495
AsuII TTCGAA 1 cut(s) 235
BalI TGGCCA 1 cut(s) 490
BbsI GAAGAC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 320
BccI CCATC 1 cut(s) 505
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 189
BfaI CTAG 2 cut(s) 45, 368
BfmI CTRYAG 2 cut(s) 148, 510
Bme1390I CCNGG 1 cut(s) 282
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 2 cut(s) 112, 125
BpiI GAAGAC 1 cut(s) 333
BpmI CTGGAG 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 235
BpuEI CTTGAG 1 cut(s) 193
Bsc4I CCNNNNNNNGG 1 cut(s) 327
Bse1I ACTGG 3 cut(s) 317, 491, 655
Bse3DI GCAATG 2 cut(s) 491, 579
BseBI CCWGG 1 cut(s) 282
BseLI CCNNNNNNNGG 1 cut(s) 327
BseMI GCAATG 2 cut(s) 491, 579
BseMII CTCAG 4 cut(s) 79, 146, 336, 671
BseNI ACTGG 3 cut(s) 317, 491, 655
BseRI GAGGAG 1 cut(s) 207
BseYI CCCAGC 1 cut(s) 442
BshFI GGCC 5 cut(s) 178, 350, 397, 490, 675
BsiHKAI GWGCWC 1 cut(s) 320
BslI CCNNNNNNNGG 1 cut(s) 327
BsmAI GTCTC 1 cut(s) 189
BsnI GGCC 5 cut(s) 178, 350, 397, 490, 675
Bsp119I TTCGAA 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 320
Bsp143I GATC 1 cut(s) 217
BspACI CCGC 1 cut(s) 506
BspANI GGCC 5 cut(s) 178, 350, 397, 490, 675
BspCNI CTCAG 4 cut(s) 78, 147, 337, 672
BspPI GGATC 1 cut(s) 225
BspT104I TTCGAA 1 cut(s) 235
BsrDI GCAATG 2 cut(s) 491, 579
BsrI ACTGG 3 cut(s) 317, 491, 655
BssMI GATC 1 cut(s) 217
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 5 cut(s) 84, 89, 385, 560, 689
BstBI TTCGAA 1 cut(s) 235
BstC8I GCNNGC 2 cut(s) 124, 677
BstDEI CTNAG 5 cut(s) 65, 155, 326, 345, 680
BstKTI GATC 1 cut(s) 220
BstMAI GTCTC 1 cut(s) 189
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 2 cut(s) 144, 238
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 2 cut(s) 148, 510
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 5 cut(s) 178, 350, 397, 490, 675
BtsIMutI CAGTG 2 cut(s) 565, 694
Cac8I GCNNGC 2 cut(s) 124, 677
CaiI CAGNNNCTG 1 cut(s) 650
Csp6I GTAC 1 cut(s) 85
CviAII CATG 2 cut(s) 39, 223
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 5 cut(s) 65, 155, 326, 345, 680
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
EaeI YGGCCR 1 cut(s) 488
Eco147I AGGCCT 2 cut(s) 397, 675
EcoRI GAATTC 1 cut(s) 276
EcoRII CCWGG 1 cut(s) 280
FaeI CATG 2 cut(s) 42, 226
FaiI YATR 5 cut(s) 40, 224, 462, 512, 632
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FatI CATG 2 cut(s) 38, 222
FblI GTMKAC 1 cut(s) 151
FspBI CTAG 2 cut(s) 45, 368
GsaI CCCAGC 1 cut(s) 446
GsuI CTGGAG 1 cut(s) 334
HaeIII GGCC 5 cut(s) 178, 350, 397, 490, 675
Hin1II CATG 2 cut(s) 42, 226
HindIII AAGCTT 1 cut(s) 239
HphI GGTGA 2 cut(s) 101, 495
Hpy166II GTNNAC 1 cut(s) 152
Hpy188I TCNGA 1 cut(s) 346
Hpy8I GTNNAC 1 cut(s) 152
HpyAV CCTTC 3 cut(s) 86, 421, 665
HpyCH4III ACNGT 5 cut(s) 84, 89, 385, 560, 689
HpyCH4V TGCA 2 cut(s) 38, 138
HpyF10VI GCNNNNNNNGC 2 cut(s) 144, 238
HpyF3I CTNAG 5 cut(s) 65, 155, 326, 345, 680
Hsp92II CATG 2 cut(s) 42, 226
Kzo9I GATC 1 cut(s) 217
LmnI GCTCC 2 cut(s) 315, 451
LweI GCATC 2 cut(s) 112, 125
MaeI CTAG 2 cut(s) 45, 368
MaeIII GTNAC 2 cut(s) 683, 689
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 7 cut(s) 65, 218, 285, 297, 333, 598, 611
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 320
MlsI TGGCCA 1 cut(s) 490
MluCI AATT 9 cut(s) 13, 276, 427, 467, 478, 522, 542, 658, 712
MluNI TGGCCA 1 cut(s) 490
MmeI TCCRAC 2 cut(s) 473, 573
MnlI CCTC 7 cut(s) 43, 150, 168, 185, 340, 408, 589
Mox20I TGGCCA 1 cut(s) 490
MscI TGGCCA 1 cut(s) 490
MseI TTAA 2 cut(s) 392, 483
Msp20I TGGCCA 1 cut(s) 490
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 2 cut(s) 144, 238
NdeII GATC 1 cut(s) 217
NlaIII CATG 2 cut(s) 42, 226
NmuCI GTSAC 1 cut(s) 689
NspV TTCGAA 1 cut(s) 235
PceI AGGCCT 2 cut(s) 397, 675
PfoI TCCNGGA 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 442
PspGI CCWGG 1 cut(s) 280
PstNI CAGNNNCTG 1 cut(s) 650
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
SaqAI TTAA 2 cut(s) 392, 483
Sau3AI GATC 1 cut(s) 217
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 320
SetI ASST 9 cut(s) 37, 111, 149, 161, 243, 257, 413, 448, 550
SfaNI GCATC 2 cut(s) 112, 125
SfcI CTRYAG 2 cut(s) 148, 510
SfuI TTCGAA 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 9 cut(s) 13, 276, 427, 467, 478, 522, 542, 658, 712
SseBI AGGCCT 2 cut(s) 397, 675
SsiI CCGC 1 cut(s) 506
SspI AATATT 1 cut(s) 390
SspMI CTAG 2 cut(s) 45, 368
StuI AGGCCT 2 cut(s) 397, 675
StyD4I CCNGG 1 cut(s) 280
TaaI ACNGT 5 cut(s) 84, 89, 385, 560, 689
TaqI TCGA 1 cut(s) 235
TasI AATT 9 cut(s) 13, 276, 427, 467, 478, 522, 542, 658, 712
Tru1I TTAA 2 cut(s) 392, 483
Tru9I TTAA 2 cut(s) 392, 483
TscAI CASTG 2 cut(s) 565, 694
TseFI GTSAC 1 cut(s) 689
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 3 cut(s) 72, 225, 692
TspRI CASTG 2 cut(s) 565, 694
XapI RAATTY 4 cut(s) 276, 478, 658, 712
XmiI GTMKAC 1 cut(s) 151
XspI CTAG 2 cut(s) 45, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.