MD09G1265100.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0000402
Physical Location & Seq
Reverse (-)
33927995 .. 33930960
2966 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1265100.v1.1.491

Sequence Viewer

Length: 339 bp
ATGGAGGGATATAACGTTAACTTGAGTGTGATGAGAAAAGGTGCCTGGACTCGAGAGGAAGATGATCTTCTCAGGCGGTGCATAGAGACTCTTGGGGAAGGAAAGTGGCACCAAGTTCCTTACAAAGCGGGCTTAAACAGGTGCAGGAAGAGCTGCAGACTAAGATGGTTGAACTATCTGAAGCCAAATATCAAGAGAGGAGACTTTACAGAGGATGAAGTAGATCTTATAGTTAGACTTCACAAGCTTTTAGGAAACAGATACAAGAGTACCAACACGATCTTTTCCGGATCCTTTTTGGTAAGGATCCTGGGAATTCATGAATCATGTGGTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

113

Amino Acids

13.12

Weight (kDa)

9.51

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 13 - 60 1.3e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 16 - 74 2.2e-13 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000402)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56650 AT1G66370 AT1G66380 AT1G66380 AT1G66390
fragaria_vesca FvH4_1g22020 FvH4_1g22040 FvH4_5g34660 FvH4_5g34660 FvH4_6g01170
malus_domestica MD04G1235800.v1.1 MD05G1276500.v1.1 MD05G1276700.v1.1 MD09G1265100.v1.1 MD09G1278400.v1.1 MD09G1278600.v1.1 MD17G1261000.v1.1 MD17G1261100.v1.1
prunus_persica Prupe.3G163000_v2.0.a1 Prupe.3G163100_v2.0.a1 Prupe.3G163300_v2.0.a1 Prupe.6G176200_v2.0.a1 Prupe.6G176300_v2.0.a1 Prupe.6G355700_v2.0.a1
pyrus_communis pycom05g25770
rosa_chinensis RchiOBHm_Chr2g0116041 RchiOBHm_Chr2g0116071 RchiOBHm_Chr3g0448721 RchiOBHm_Chr3g0492711 RchiOBHm_Chr4g0415831 RchiOBHm_Chr4g0415891 RchiOBHm_Chr7g0235271
rosa_laevigata RLG00000001168 RLG00000008031 RLG00000008035 RLG00000018232 RLG00000018234 RLG00000025877
rosa_multiflora Rmu_sc0003147.1_g000006 Rmu_sc0003147.1_g000008 Rmu_sc0003147.1_g000018 Rmu_sc0004637.1_g000011 Rmu_sc0004657.1_g000064 Rmu_sc0013612.1_g000010 Rmu_sc0017810.1_g000002 Rmu_sc0027086.1_g000003
rosa_roxburghii Rroxscaffold_2G00127520 Rroxscaffold_2G00127530 Rroxscaffold_2G00127560 Rroxscaffold_2G00128380 Rroxscaffold_5G00359700 Rroxscaffold_5G00359730 Rroxscaffold_6G00392130
rosa_rugosa Rorug01G0050500 Rorug02G0202600 Rorug02G0202700 Rorug02G0202700 Rorug02G0202900 Rorug02G0203000 Rorug02G0616200 Rorug03G0256600 Rorug04G0137200 Rorug04G0247500
rosa_samantha Rh2AG259100 Rh2AG259200 Rh2BG270400 Rh2BG270700 Rh2BG270800 Rh2CG265700 Rh2CG265900 Rh2DG267400 Rh2DG267600 Rh3AG014400 Rh3AG069900 Rh3AG305900 Rh3BG014200 Rh3BG342300 Rh3CG013200 Rh3DG014800 Rh3DG341700 Rh4AG198700 Rh4AG199200 Rh4AG199500 Rh4BG197000 Rh4CG210100 Rh4DG196500 Rh4DG197000 Rh4DG197300 Rh7AG444500 Rh7DG433400
rosa_wichuraiana Rw0G010310 Rw2G020310 Rw2G020320 Rw2G020330 Rw3G001070 Rw3G026940 Rw4G016830 Rw4G016880 Rw4G016910 Rw7G036930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 41, 108
AccIII TCCGGA 1 cut(s) 287
AciI CCGC 2 cut(s) 76, 128
AclI AACGTT 1 cut(s) 15
AclWI GGATC 4 cut(s) 285, 298, 301, 314
AcsI RAATTY 1 cut(s) 315
AcuI CTGAAG 1 cut(s) 200
AfaI GTAC 1 cut(s) 271
AgsI TTSAA 1 cut(s) 172
AjnI CCWGG 2 cut(s) 44, 309
AluBI AGCT 2 cut(s) 153, 247
AluI AGCT 2 cut(s) 153, 247
Alw26I GTCTC 2 cut(s) 80, 195
AlwI GGATC 4 cut(s) 285, 298, 301, 314
Ama87I CYCGRG 1 cut(s) 51
Aor13HI TCCGGA 1 cut(s) 287
ApeKI GCWGC 1 cut(s) 153
ApoI RAATTY 1 cut(s) 315
AvaI CYCGRG 1 cut(s) 51
BaeI ACNNNNGTAYC 4 cut(s) 253, 253, 286, 286
BamHI GGATCC 2 cut(s) 290, 306
BanI GGYRCC 2 cut(s) 41, 108
BbvI GCAGC 1 cut(s) 140
BccI CCATC 1 cut(s) 159
BciT130I CCWGG 2 cut(s) 46, 311
BcoDI GTCTC 2 cut(s) 80, 195
BfmI CTRYAG 1 cut(s) 154
BglII AGATCT 1 cut(s) 223
BisI GCNGC 1 cut(s) 154
BlsI GCNGC 1 cut(s) 155
Bme1390I CCNGG 2 cut(s) 46, 311
BmeT110I CYCGRG 1 cut(s) 51
BmiI GGNNCC 4 cut(s) 43, 110, 292, 308
BmrFI CCNGG 2 cut(s) 46, 311
BpuEI CTTGAG 1 cut(s) 43
BsaJI CCNNGG 1 cut(s) 310
BsaWI WCCGGW 1 cut(s) 287
BseAI TCCGGA 1 cut(s) 287
BseBI CCWGG 2 cut(s) 46, 311
BseDI CCNNGG 1 cut(s) 310
BseGI GGATG 1 cut(s) 220
BseMII CTCAG 1 cut(s) 85
BseRI GAGGAG 1 cut(s) 213
BseXI GCAGC 1 cut(s) 140
BsgI GTGCAG 1 cut(s) 163
BshNI GGYRCC 2 cut(s) 41, 108
BsiHKCI CYCGRG 1 cut(s) 51
BsiSI CCGG 1 cut(s) 288
BsmAI GTCTC 2 cut(s) 80, 195
BsoBI CYCGRG 1 cut(s) 51
Bsp13I TCCGGA 1 cut(s) 287
Bsp143I GATC 5 cut(s) 64, 223, 279, 290, 306
BspACI CCGC 2 cut(s) 76, 128
BspCNI CTCAG 1 cut(s) 84
BspEI TCCGGA 1 cut(s) 287
BspHI TCATGA 1 cut(s) 319
BspLI GGNNCC 4 cut(s) 43, 110, 292, 308
BspMAI CTGCAG 1 cut(s) 158
BspPI GGATC 4 cut(s) 285, 298, 301, 314
BspQI GCTCTTC 1 cut(s) 143
BspT107I GGYRCC 2 cut(s) 41, 108
BssECI CCNNGG 1 cut(s) 310
BssMI GATC 5 cut(s) 64, 223, 279, 290, 306
Bst2UI CCWGG 2 cut(s) 46, 311
Bst6I CTCTTC 1 cut(s) 143
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 2 cut(s) 71, 161
BstF5I GGATG 1 cut(s) 220
BstKTI GATC 5 cut(s) 67, 226, 282, 293, 309
BstMAI GTCTC 2 cut(s) 80, 195
BstMBI GATC 5 cut(s) 64, 223, 279, 290, 306
BstMWI GCNNNNNNNGC 1 cut(s) 150
BstNI CCWGG 2 cut(s) 46, 311
BstSCI CCNGG 2 cut(s) 44, 309
BstSFI CTRYAG 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 140
BstX2I RGATCY 3 cut(s) 223, 290, 306
BstYI RGATCY 3 cut(s) 223, 290, 306
BtsCI GGATG 1 cut(s) 220
Cac8I GCNNGC 1 cut(s) 130
CciI TCATGA 1 cut(s) 319
Csp6I GTAC 1 cut(s) 270
CviAII CATG 2 cut(s) 320, 327
CviJI RGCY 4 cut(s) 132, 153, 184, 247
CviKI_1 RGCY 4 cut(s) 132, 153, 184, 247
CviQI GTAC 1 cut(s) 270
DdeI CTNAG 2 cut(s) 71, 161
DpnI GATC 5 cut(s) 66, 225, 281, 292, 308
DpnII GATC 5 cut(s) 64, 223, 279, 290, 306
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Eco57I CTGAAG 1 cut(s) 200
Eco88I CYCGRG 1 cut(s) 51
EcoRI GAATTC 1 cut(s) 315
EcoRII CCWGG 2 cut(s) 44, 309
FaeI CATG 2 cut(s) 323, 330
FaiI YATR 5 cut(s) 12, 83, 230, 321, 328
FalI AAGNNNNNCTT 4 cut(s) 51, 83, 210, 242
FatI CATG 2 cut(s) 319, 326
FauI CCCGC 1 cut(s) 121
Fnu4HI GCNGC 1 cut(s) 154
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 154
GluI GCNGC 1 cut(s) 154
HapII CCGG 1 cut(s) 288
Hin1II CATG 2 cut(s) 323, 330
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 3 cut(s) 49, 88, 323
HpaI GTTAAC 1 cut(s) 19
HpaII CCGG 1 cut(s) 288
Hpy166II GTNNAC 1 cut(s) 19
Hpy188I TCNGA 1 cut(s) 180
Hpy188III TCNNGA 4 cut(s) 53, 193, 288, 320
Hpy8I GTNNAC 1 cut(s) 19
HpyAV CCTTC 1 cut(s) 92
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 81, 144, 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 150
HpyF3I CTNAG 2 cut(s) 71, 161
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 2 cut(s) 323, 330
Kpn2I TCCGGA 1 cut(s) 287
KspAI GTTAAC 1 cut(s) 19
Kzo9I GATC 5 cut(s) 64, 223, 279, 290, 306
LguI GCTCTTC 1 cut(s) 143
LpnPI CCDG 8 cut(s) 31, 58, 58, 124, 130, 296, 301, 323
Lsp1109I GCAGC 1 cut(s) 140
MaeII ACGT 1 cut(s) 15
MalI GATC 5 cut(s) 66, 225, 281, 292, 308
MboI GATC 5 cut(s) 64, 223, 279, 290, 306
MboII GAAGA 3 cut(s) 59, 71, 160
MflI RGATCY 3 cut(s) 223, 290, 306
MluCI AATT 1 cut(s) 315
MlyI GAGTC 2 cut(s) 43, 82
MnlI CCTC 3 cut(s) 49, 191, 205
MroI TCCGGA 1 cut(s) 287
MseI TTAA 2 cut(s) 18, 134
MspI CCGG 1 cut(s) 288
MspR9I CCNGG 2 cut(s) 46, 311
MvaI CCWGG 2 cut(s) 46, 311
MwoI GCNNNNNNNGC 1 cut(s) 150
NdeII GATC 5 cut(s) 64, 223, 279, 290, 306
NlaIII CATG 2 cut(s) 323, 330
NlaIV GGNNCC 4 cut(s) 43, 110, 292, 308
PaeR7I CTCGAG 1 cut(s) 51
PagI TCATGA 1 cut(s) 319
PciSI GCTCTTC 1 cut(s) 143
PfeI GAWTC 1 cut(s) 323
PkrI GCNGC 1 cut(s) 155
PleI GAGTC 2 cut(s) 43, 82
PpsI GAGTC 2 cut(s) 43, 82
Psp1406I AACGTT 1 cut(s) 15
Psp6I CCWGG 2 cut(s) 44, 309
PspGI CCWGG 2 cut(s) 44, 309
PspN4I GGNNCC 4 cut(s) 43, 110, 292, 308
PstI CTGCAG 1 cut(s) 158
PsuI RGATCY 3 cut(s) 223, 290, 306
RsaI GTAC 1 cut(s) 271
RsaNI GTAC 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 143
SaqAI TTAA 2 cut(s) 18, 134
SatI GCNGC 1 cut(s) 154
Sau3AI GATC 5 cut(s) 64, 223, 279, 290, 306
SchI GAGTC 2 cut(s) 43, 82
ScrFI CCNGG 2 cut(s) 46, 311
SetI ASST 5 cut(s) 18, 43, 143, 155, 249
SfcI CTRYAG 1 cut(s) 154
Sfr274I CTCGAG 1 cut(s) 51
SlaI CTCGAG 1 cut(s) 51
SmlI CTYRAG 2 cut(s) 22, 51
SmoI CTYRAG 2 cut(s) 22, 51
Sse9I AATT 1 cut(s) 315
SsiI CCGC 2 cut(s) 76, 128
StyD4I CCNGG 2 cut(s) 44, 309
TaiI ACGT 1 cut(s) 18
TaqI TCGA 1 cut(s) 52
TasI AATT 1 cut(s) 315
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 2 cut(s) 18, 134
Tru9I TTAA 2 cut(s) 18, 134
TseI GCWGC 1 cut(s) 153
TspDTI ATGAA 3 cut(s) 231, 308, 336
XapI RAATTY 1 cut(s) 315
XhoI CTCGAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.